diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/Lucarelli_CellSystems2018.yaml b/Benchmark-Models/Lucarelli_CellSystems2018/Lucarelli_CellSystems2018.yaml index e7b93e4..7b0c0bd 100644 --- a/Benchmark-Models/Lucarelli_CellSystems2018/Lucarelli_CellSystems2018.yaml +++ b/Benchmark-Models/Lucarelli_CellSystems2018/Lucarelli_CellSystems2018.yaml @@ -9,3 +9,5 @@ problems: - observables_Lucarelli_CellSystems2018.tsv sbml_files: - model_Lucarelli_CellSystems2018.xml + visualization_files: + - visualizationSpecification_Lucarelli_CellSystems2018.tsv diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/measurementData_Lucarelli_CellSystems2018.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/measurementData_Lucarelli_CellSystems2018.tsv index 4abce96..04cd6fb 100644 --- a/Benchmark-Models/Lucarelli_CellSystems2018/measurementData_Lucarelli_CellSystems2018.tsv +++ b/Benchmark-Models/Lucarelli_CellSystems2018/measurementData_Lucarelli_CellSystems2018.tsv @@ -1,1756 +1,1756 @@ 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12.2931736923098 60 -S4IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 2.04826653496219 60 -S4IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 85.658559772728 60 -S23IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 84.4240920290022 60 -S23IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 85.917063914309 60 -S23IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 15.2668721616991 60 -S23IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 13.1106354190217 60 -S23IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 0.309035809298737 60 -S23IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 0.972300666669304 60 -S2IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 99.8957387583961 60 -S2IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 99.8922620643039 60 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smad2_phosphorylation +S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 99.2455191337943 600 smad2_phosphorylation +S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 99.9167842941523 0 smad2_phosphorylation +S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 47.3893808947687 30 smad2_phosphorylation +S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 28.0249482458978 60 smad2_phosphorylation +S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 33.3448460277416 90 smad2_phosphorylation +S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 41.859562117399 120 smad2_phosphorylation +S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 77.9208862450096 240 smad2_phosphorylation +S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 98.1633609898563 600 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation 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+S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.762326208303434 240 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.272163058075236 600 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.0473489279940141 0 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 4.8385657949792 30 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 5.22086281549088 60 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 5.30805314593874 90 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 5.68214650949777 120 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 2.56841565026501 240 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 600 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 69.4413639557425 30 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 30.2898750386182 30 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 36.02249193804 120 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 5.09143277107705 240 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 5.07066043767908 0 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 25.2537456695663 30 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 55.2486053241835 90 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 48.9948139811531 120 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 12.0149695958628 240 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.48231780813045 600 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.0358667778537211 0 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 47.7720533102521 30 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 66.7541889386113 60 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 61.3471008263196 90 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 52.4582913731032 120 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 19.5106981047254 240 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 1.83663901014371 600 smad2_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 91.5615902549364 0 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 36.3404789403103 30 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 46.1660595701593 90 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 61.9297291067576 120 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 61.5941847963185 240 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 81.798671076746 600 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 100 0 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 43.6319359821238 30 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 37.4197099285213 60 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 41.5965260833748 90 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 50.8413155257616 120 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 83.0042219875256 240 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 99.41754308324 600 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 2.49090105531306 0 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 10.5874790553261 30 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 3.89666628426076 90 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.64092681591881 120 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 5.42733730254946 240 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 2.7205011028907 600 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 11.7735196275139 30 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 12.591305648974 60 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 10.494633296677 90 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 13.1901948279891 120 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 4.1679243561974 240 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 600 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 5.94750868975056 0 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 53.0720420043636 30 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 49.93727414558 90 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 31.4293440773236 120 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 32.9784779011321 240 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 15.4808278203633 600 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 44.5945443903623 30 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 49.9889844225047 60 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 47.9088406199481 90 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 35.9684896462493 120 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 12.827853656277 240 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.58245691675996 600 smad3_phosphorylation +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 136.703365371862 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 121.514102552766 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 158.288107272682 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 153.491497961389 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 138.302235142293 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 147.096018879664 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 128.709016519706 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.299409568371 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 160.686411928329 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 167.881325895269 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 153.491497961389 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 137.502800257077 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 143.898279338802 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 135.104495601431 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 128.709016519706 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 124.711842093628 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 143.898279338802 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 139.901104912724 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 119.31603096647 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 87.2688839144325 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 63.1673105116605 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 59.8566548244666 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 62.6376056017095 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 59.9890810519543 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 69.3913432035852 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 70.8480317059505 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 56.1487204548093 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 35.4902289667191 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 52.7056385401276 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 54.5596057249563 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 60.5187859619054 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 66.0806875163912 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 66.3455399713667 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 75.3505234405342 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 90.8443920566019 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 99.9818017532572 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 91.7960673851348 0 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.6119158183686 30 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.320041771802 90 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.2002832566086 120 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.8153000885172 240 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 90.0708144682987 600 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 90.8365173702981 0 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.0993870173656 30 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 88.8446183642758 60 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 90.3984250695305 90 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.6991395204982 120 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.9932660730457 240 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.3962280606756 600 isoform_abundance +S23IP_tS3_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 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Bmp4_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.873009861896696 0 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.719070018589466 60 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.663355156810243 180 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.577609586263655 360 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.442577726868474 600 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.98934993425788 0 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.77081379818422 60 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.813207301352623 180 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.731336460034904 360 Cxcl15_gene_expression1_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data12 0.487678042177879 600 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Dusp5_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 0.664363042960381 0 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 1.12461608888061 60 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 0.583063158549947 180 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 0.390403765841137 360 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 0.346925804805556 600 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 0.858598013956627 0 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 1.22306882427313 60 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 0.549285704244782 180 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 0.413760456016437 360 Tgfa_gene_expression1_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data12 0.308329601981877 600 Tgfa_gene_expression1_tgf 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Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 1.61199386895183 60 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 3.6051607231493 180 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 3.09658900405819 360 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 2.32271799913008 600 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 0.967496122260125 0 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 1.38357990664331 60 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 3.3181615433217 180 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 3.07098836319924 360 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 2.16775908997755 600 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data13 0.930875895201857 0 Ski_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 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Skil_gene_expression2_tgf +Skil_gene_expression_OE_nExpID100 model1_data13 8.92302625503586 180 Skil_gene_expression2_tgf +Skil_gene_expression_OE_nExpID100 model1_data13 10.7736776934081 360 Skil_gene_expression2_tgf +Skil_gene_expression_OE_nExpID100 model1_data13 6.94365811592188 600 Skil_gene_expression2_tgf +Skil_gene_expression_OE_nExpID100 model1_data13 0.960908298784601 0 Skil_gene_expression2_tgf +Skil_gene_expression_OE_nExpID100 model1_data13 6.86309297886674 60 Skil_gene_expression2_tgf +Skil_gene_expression_OE_nExpID100 model1_data13 10.4437980480134 180 Skil_gene_expression2_tgf +Skil_gene_expression_OE_nExpID100 model1_data13 12.4260407763087 360 Skil_gene_expression2_tgf +Skil_gene_expression_OE_nExpID100 model1_data13 8.58870472137509 600 Skil_gene_expression2_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data13 1.22169145728433 0 Dnmt3a_gene_expression2_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data13 1.25209910978705 60 Dnmt3a_gene_expression2_tgf 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Jun_gene_expression2_tgf +Jun_gene_expression_OE_nExpID100 model1_data13 4.56873140967498 360 Jun_gene_expression2_tgf +Jun_gene_expression_OE_nExpID100 model1_data13 3.98889438290018 600 Jun_gene_expression2_tgf +Jun_gene_expression_OE_nExpID100 model1_data13 1.16834888872366 0 Jun_gene_expression2_tgf +Jun_gene_expression_OE_nExpID100 model1_data13 3.96195173593289 60 Jun_gene_expression2_tgf +Jun_gene_expression_OE_nExpID100 model1_data13 3.52388695466415 180 Jun_gene_expression2_tgf +Jun_gene_expression_OE_nExpID100 model1_data13 5.12850896708727 360 Jun_gene_expression2_tgf +Jun_gene_expression_OE_nExpID100 model1_data13 4.09087520918777 600 Jun_gene_expression2_tgf +Smad7_gene_expression_OE_nExpID100 model1_data13 1.16378195298091 0 Smad7_gene_expression2_tgf +Smad7_gene_expression_OE_nExpID100 model1_data13 7.51243237369742 60 Smad7_gene_expression2_tgf +Smad7_gene_expression_OE_nExpID100 model1_data13 5.13533047532627 180 Smad7_gene_expression2_tgf 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+Smad7_gene_expression_OE_nExpID100 model1_data13 5.79687202754499 360 Smad7_gene_expression2_tgf +Smad7_gene_expression_OE_nExpID100 model1_data13 3.24273824099474 600 Smad7_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 1.01585929165242 0 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 11.4467775965114 60 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 3.22430307334556 180 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 3.25299457318097 360 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 1.75767853763359 600 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 0.808930944412443 0 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 8.65596801060135 60 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 2.83988840630717 180 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 3.14879740609639 360 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 1.66967074915901 600 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 0.957155666577639 0 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 11.2117632376403 60 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 3.42744723707163 180 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 3.24228513925329 360 Klf10_gene_expression2_tgf +Klf10_gene_expression_OE_nExpID100 model1_data13 1.99599547128797 600 Klf10_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.22881140766912 0 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.82153868068266 60 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.19421797001523 180 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.48420977398464 360 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 2.78006409152267 600 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.11470995592566 0 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.55204135624625 60 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.05570068638687 180 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.42535496389865 360 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 2.11281217805549 600 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 0.919568250884153 0 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.66524859304271 60 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.04787406558961 180 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.25387758413874 360 Bmp4_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data13 1.74989133881297 600 Bmp4_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.25146016785118 0 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.02452153553818 60 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.04556276270551 180 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.05267969708143 360 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 0.726419979019665 600 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.17307427527351 0 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.01173863191464 60 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.06807325353667 180 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 0.954934966441111 360 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 0.741618993051273 600 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 0.711195827662627 0 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.36339975769277 60 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 1.15138262846678 180 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 0.787300929533175 360 Cxcl15_gene_expression2_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data13 0.439683213015839 600 Cxcl15_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.911656267252456 0 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.759375981348703 60 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.548296255085267 180 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.81172705778466 360 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 1.09715263663123 600 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.849753910370714 0 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.764159438554318 60 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.513937464256655 180 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.799197838930475 360 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.858351211759277 600 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.871616710776617 0 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 1.27988722472345 60 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.555387322713624 180 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.72935197555757 360 Dusp5_gene_expression2_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data13 0.756360284395681 600 Dusp5_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 1.15816328426918 0 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 1.28169080763412 60 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.713366853113669 180 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.464491673828657 360 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.358163181157106 600 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 1.00069029576826 0 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 1.37581627674859 60 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.780170679128022 180 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.443675236043546 360 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.416722351775097 600 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.927522062763395 0 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.785636859230549 60 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.756991730476322 180 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.417527460799941 360 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.416891598425792 600 Tgfa_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 1.15020408733347 0 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.780661882213569 60 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.40049432796229 180 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.616773878897055 360 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.856320360545906 600 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.921370159488633 0 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.611306153736486 60 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.30195042934531 180 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.475412776256644 360 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.563550148092534 600 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.938217450882636 0 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.94616339240079 60 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.389520445558127 180 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.465607545469261 360 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.61898933856048 600 Pdk4_gene_expression2_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 1.19735154739345 0 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 1.85584913328126 60 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 4.30980267060237 180 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.685777642974 360 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 2.84717195983563 600 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 1.22550241278902 0 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 1.61435881160232 60 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 4.65382871368156 180 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.77745294852577 360 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.10596516443308 600 Ski_gene_expression3_tgf 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1.85266586141628 0 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 7.76264284686361 60 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 13.7007773544872 180 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 13.007535831373 360 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.8236858689826 600 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 1.87133472735655 0 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 8.64107740090146 60 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 13.3077783457509 180 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.5777504870929 360 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.7120999659306 600 Skil_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 0.925083333322898 0 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.07091517014217 60 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.86844348863042 180 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.04375886712087 360 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.61625146569609 600 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.34378291736244 0 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.05923673709967 60 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.53222576864066 180 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.21154235650611 360 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.15108345196662 600 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.17863556427922 0 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.38854915750746 60 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.77620795738405 180 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.06602901862353 360 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.93686810785438 600 Dnmt3a_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 0.915511834253427 0 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 1.05425359843737 60 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 2.26815674086638 180 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 2.60995236929394 360 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 2.55465465919713 600 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 1.60701185425507 0 Sox4_gene_expression3_tgf 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3.87756431879974 60 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.1559120615507 180 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 6.08893510010639 360 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 6.28160672424118 600 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 1.15177234616111 0 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.29105798721543 60 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 3.55262058071457 180 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.90745828991876 360 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 5.66988186382971 600 Jun_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 1.25576308625027 0 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 11.358225869129 60 Smad7_gene_expression3_tgf 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+Klf10_gene_expression_OE_nExpID100 model1_data14 3.86474943702454 180 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 3.34223244253316 360 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 2.64526335225449 600 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 1.16705497815168 0 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 15.1516520965943 60 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 4.05875415978784 180 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 3.36015582809614 360 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 3.02356581034754 600 Klf10_gene_expression3_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data14 1.12263257263158 0 Bmp4_gene_expression3_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data14 3.06204303737139 60 Bmp4_gene_expression3_tgf 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model1_data14 3.1010875319822 180 Bmp4_gene_expression3_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data14 2.13991341239553 360 Bmp4_gene_expression3_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data14 2.79906437831205 600 Bmp4_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.831963994127484 0 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.764367667152498 60 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.735193893469952 180 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.542439525527043 360 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.320044297085708 600 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 1.05352626340402 0 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 1.0192265977588 60 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.622181050946678 180 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.683952711593611 360 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.390594736137687 600 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 1.00035743622621 0 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.9099065567673 60 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.615298671257051 180 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.600122058279603 360 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.408856535478787 600 Cxcl15_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.884597007639091 0 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.830857020639016 60 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.300981231479239 180 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.573369171207573 360 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.886689928031638 600 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.864847181401713 0 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.795211798115863 60 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.288159411773905 180 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.622112349203629 360 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.763505827504084 600 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.977097226425524 0 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.928977920874771 60 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.302009221319079 180 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.647693485779793 360 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.917472948627889 600 Dusp5_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.855904311890037 0 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 1.26586282292157 60 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.56239442610694 180 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.377392317868309 360 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.361123589415999 600 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.589964916994423 0 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.877150948905176 60 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.503820391036637 180 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.346336758417436 360 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.308100382757902 600 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.792369037334648 0 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 1.03235110796014 60 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.531135239362709 180 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.351787123994847 360 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.32730016175906 600 Tgfa_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.922517092624895 0 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.585665725458668 60 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.135128548033161 180 Pdk4_gene_expression3_tgf 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model1_data14 0.245146236405318 360 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.391577190164741 600 Pdk4_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 1.43936925627874 0 Ski_gene_expression4_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 1.68432023795095 60 Ski_gene_expression4_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 3.30995398304762 180 Ski_gene_expression4_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 3.5705710465588 360 Ski_gene_expression4_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 2.93432957638499 600 Ski_gene_expression4_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 1.34375762647473 0 Ski_gene_expression4_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 1.81338662907344 60 Ski_gene_expression4_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 3.82757071011921 180 Ski_gene_expression4_tgf +Ski_gene_expression_OE_nExpID100 model1_data15 3.38983817674789 360 Ski_gene_expression4_tgf 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+Bmp4_gene_expression_OE_nExpID100 model1_data15 1.53008755186399 60 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 0.913905366543325 180 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.47362203455616 360 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 2.4664637758536 600 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 0.621831296726794 0 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.57033975476031 60 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.36797564756144 180 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.75864432179338 360 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 2.9492203140785 600 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.08936566104914 0 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 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60 Dusp5_gene_expression4_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data15 0.444543739676494 180 Dusp5_gene_expression4_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data15 0.762802759030576 360 Dusp5_gene_expression4_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data15 0.805853306041397 600 Dusp5_gene_expression4_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data15 1.01950160777508 0 Tgfa_gene_expression4_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data15 1.19162931127022 60 Tgfa_gene_expression4_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data15 0.720175386955715 180 Tgfa_gene_expression4_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data15 0.471302170714845 360 Tgfa_gene_expression4_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data15 0.366391966496835 600 Tgfa_gene_expression4_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data15 1.01537323765818 0 Tgfa_gene_expression4_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data15 1.26060395364535 60 Tgfa_gene_expression4_tgf 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31.9915859462733 60 dataset25 +S2IP_S2_MSPL2_complexes_all_hepa16_time_course_nExpID6 model1_data16 81.0866462279047 240 dataset25 +S2IP_pS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 model1_data16 0.343000565113406 0 dataset25 +S2IP_pS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 model1_data16 2.34541686633641 60 dataset25 +S2IP_pS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 model1_data16 1.18865260124031 240 dataset25 +S2IP_ppS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 model1_data16 6.01855158641925E-07 0 dataset25 +S2IP_ppS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 model1_data16 65.6629971873903 60 dataset25 +S2IP_ppS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 model1_data16 17.724701170855 240 dataset25 diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/simulatedData_Lucarelli_CellSystems2018.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/simulatedData_Lucarelli_CellSystems2018.tsv index c0fe9d4..804da3b 100644 --- a/Benchmark-Models/Lucarelli_CellSystems2018/simulatedData_Lucarelli_CellSystems2018.tsv +++ b/Benchmark-Models/Lucarelli_CellSystems2018/simulatedData_Lucarelli_CellSystems2018.tsv @@ -1,1756 +1,1756 @@ -observableId simulationConditionId simulation time -S23IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 100.0 60 -S23IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 100.0 60 -S23IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 100.0 60 -S23IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 100.0 60 -S23IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 0.0 60 -S23IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 0.0 60 -S23IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 0.0 60 -S23IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 model1_data1 0.0 60 -S23IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 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3.715839886333435 180 -Ski_gene_expression_OE_nExpID100 model1_data14 4.156183162172929 360 -Ski_gene_expression_OE_nExpID100 model1_data14 3.167521123912671 600 -Skil_gene_expression_OE_nExpID100 model1_data14 1.000001 0 -Skil_gene_expression_OE_nExpID100 model1_data14 7.07799209180907 60 -Skil_gene_expression_OE_nExpID100 model1_data14 12.560740400659292 180 -Skil_gene_expression_OE_nExpID100 model1_data14 14.065203267489798 360 -Skil_gene_expression_OE_nExpID100 model1_data14 12.369564164941146 600 -Skil_gene_expression_OE_nExpID100 model1_data14 1.000001 0 -Skil_gene_expression_OE_nExpID100 model1_data14 7.07799209180907 60 -Skil_gene_expression_OE_nExpID100 model1_data14 12.560740400659292 180 -Skil_gene_expression_OE_nExpID100 model1_data14 14.065203267489798 360 -Skil_gene_expression_OE_nExpID100 model1_data14 12.369564164941146 600 -Skil_gene_expression_OE_nExpID100 model1_data14 1.000001 0 -Skil_gene_expression_OE_nExpID100 model1_data14 7.07799209180907 60 -Skil_gene_expression_OE_nExpID100 model1_data14 12.560740400659292 180 -Skil_gene_expression_OE_nExpID100 model1_data14 14.065203267489798 360 -Skil_gene_expression_OE_nExpID100 model1_data14 12.369564164941146 600 -Smad7_gene_expression_OE_nExpID100 model1_data14 1.000001 0 -Smad7_gene_expression_OE_nExpID100 model1_data14 8.724468042168638 60 -Smad7_gene_expression_OE_nExpID100 model1_data14 8.347846302444998 180 -Smad7_gene_expression_OE_nExpID100 model1_data14 7.3209820710128275 360 -Smad7_gene_expression_OE_nExpID100 model1_data14 5.285283170835836 600 -Smad7_gene_expression_OE_nExpID100 model1_data14 1.000001 0 -Smad7_gene_expression_OE_nExpID100 model1_data14 8.724468042168638 60 -Smad7_gene_expression_OE_nExpID100 model1_data14 8.347846302444998 180 -Smad7_gene_expression_OE_nExpID100 model1_data14 7.3209820710128275 360 -Smad7_gene_expression_OE_nExpID100 model1_data14 5.285283170835836 600 -Smad7_gene_expression_OE_nExpID100 model1_data14 1.000001 0 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600 -Dusp5_gene_expression_OE_nExpID100 model1_data15 1.000001 0 -Dusp5_gene_expression_OE_nExpID100 model1_data15 0.7396468733715774 60 -Dusp5_gene_expression_OE_nExpID100 model1_data15 0.5541255216829797 180 -Dusp5_gene_expression_OE_nExpID100 model1_data15 0.6680751901373235 360 -Dusp5_gene_expression_OE_nExpID100 model1_data15 0.8607495355097066 600 -Dusp5_gene_expression_OE_nExpID100 model1_data15 1.000001 0 -Dusp5_gene_expression_OE_nExpID100 model1_data15 0.7396468733715774 60 -Dusp5_gene_expression_OE_nExpID100 model1_data15 0.5541255216829797 180 -Dusp5_gene_expression_OE_nExpID100 model1_data15 0.6680751901373235 360 -Dusp5_gene_expression_OE_nExpID100 model1_data15 0.8607495355097066 600 -Jun_gene_expression_OE_nExpID100 model1_data15 1.000001 0 -Jun_gene_expression_OE_nExpID100 model1_data15 4.009532241695321 60 -Jun_gene_expression_OE_nExpID100 model1_data15 4.107667038432844 180 -Jun_gene_expression_OE_nExpID100 model1_data15 4.255681918029563 360 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model1_data13 1.51021281438119 600 Klf10_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 1.000001 0 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.645597773816804 60 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.411907450533981 180 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.525982653089875 360 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.779194976555794 600 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 1.000001 0 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.645597773816804 60 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.411907450533981 180 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.525982653089875 360 Pdk4_gene_expression2_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data13 0.779194976555794 600 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0.507614723423203 360 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.426466659965374 600 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 1.000001 0 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.886680187925148 60 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.686498850243949 180 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.507614723423203 360 Tgfa_gene_expression2_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data13 0.426466659965374 600 Tgfa_gene_expression2_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Bmp4_gene_expression3_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data14 3.24679401208551 60 Bmp4_gene_expression3_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data14 3.16834790770476 180 Bmp4_gene_expression3_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data14 2.98967350236984 360 Bmp4_gene_expression3_tgf 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2.63621940847534 600 Bmp4_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.868400286741808 60 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.671718708328362 180 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.506469682187498 360 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.438557269577396 600 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.868400286741808 60 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.671718708328362 180 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.506469682187498 360 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.438557269577396 600 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.868400286741808 60 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.671718708328362 180 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.506469682187498 360 Cxcl15_gene_expression3_tgf +Cxcl15_gene_expression_OE_nExpID100 model1_data14 0.438557269577396 600 Cxcl15_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.38898097107489 60 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.0867753096966 180 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.39229403332538 360 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.07793730786837 600 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.38898097107489 60 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.0867753096966 180 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.39229403332538 360 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.07793730786837 600 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 1.38898097107489 60 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.0867753096966 180 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.39229403332538 360 Dnmt3a_gene_expression3_tgf +Dnmt3a_gene_expression_OE_nExpID100 model1_data14 2.07793730786837 600 Dnmt3a_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.641922665698267 60 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.385215861907446 180 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.518300929543942 360 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.769194040621914 600 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.641922665698267 60 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.385215861907446 180 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.518300929543942 360 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.769194040621914 600 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.641922665698267 60 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.385215861907446 180 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.518300929543942 360 Dusp5_gene_expression3_tgf +Dusp5_gene_expression_OE_nExpID100 model1_data14 0.769194040621914 600 Dusp5_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.70564529120907 60 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.68026615383638 180 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.59804692152961 360 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.37081548608415 600 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.70564529120907 60 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.68026615383638 180 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.59804692152961 360 Jun_gene_expression3_tgf +Jun_gene_expression_OE_nExpID100 model1_data14 4.37081548608415 600 Jun_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 10.6535530393163 60 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 7.24251279375054 180 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 3.68181583701477 360 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 1.90002892421696 600 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 10.6535530393163 60 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 7.24251279375054 180 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 3.68181583701477 360 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 1.90002892421696 600 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 10.6535530393163 60 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 7.24251279375054 180 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 3.68181583701477 360 Klf10_gene_expression3_tgf +Klf10_gene_expression_OE_nExpID100 model1_data14 1.90002892421696 600 Klf10_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.496401026094761 60 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.169091697560881 180 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.212564939435593 360 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.472070742860815 600 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.496401026094761 60 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.169091697560881 180 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.212564939435593 360 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.472070742860815 600 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.496401026094761 60 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.169091697560881 180 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.212564939435593 360 Pdk4_gene_expression3_tgf +Pdk4_gene_expression_OE_nExpID100 model1_data14 0.472070742860815 600 Pdk4_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 2.02516852582044 60 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.71583988633343 180 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 4.15618316217293 360 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.16752112391267 600 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 2.02516852582044 60 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.71583988633343 180 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 4.15618316217293 360 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.16752112391267 600 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 2.02516852582044 60 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.71583988633343 180 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 4.15618316217293 360 Ski_gene_expression3_tgf +Ski_gene_expression_OE_nExpID100 model1_data14 3.16752112391267 600 Ski_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 7.07799209180907 60 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.5607404006593 180 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 14.0652032674898 360 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.3695641649411 600 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 7.07799209180907 60 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.5607404006593 180 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 14.0652032674898 360 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.3695641649411 600 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 7.07799209180907 60 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.5607404006593 180 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 14.0652032674898 360 Skil_gene_expression3_tgf +Skil_gene_expression_OE_nExpID100 model1_data14 12.3695641649411 600 Skil_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 8.72446804216864 60 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 8.347846302445 180 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 7.32098207101283 360 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 5.28528317083584 600 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 8.72446804216864 60 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 8.347846302445 180 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 7.32098207101283 360 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 5.28528317083584 600 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 8.72446804216864 60 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 8.347846302445 180 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 7.32098207101283 360 Smad7_gene_expression3_tgf +Smad7_gene_expression_OE_nExpID100 model1_data14 5.28528317083584 600 Smad7_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 1.36416565293802 60 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 2.18581441888844 180 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 3.15724472708604 360 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 3.7782403380626 600 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 1.36416565293802 60 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 2.18581441888844 180 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 3.15724472708604 360 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 3.7782403380626 600 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 1.36416565293802 60 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 2.18581441888844 180 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 3.15724472708604 360 Sox4_gene_expression3_tgf +Sox4_gene_expression_OE_nExpID100 model1_data14 3.7782403380626 600 Sox4_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.839197765169727 60 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.594445470868605 180 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.392910035701713 360 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.314355599661166 600 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.839197765169727 60 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.594445470868605 180 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.392910035701713 360 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.314355599661166 600 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 1.000001 0 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.839197765169727 60 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.594445470868605 180 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.392910035701713 360 Tgfa_gene_expression3_tgf +Tgfa_gene_expression_OE_nExpID100 model1_data14 0.314355599661166 600 Tgfa_gene_expression3_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.000001 0 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.38179895233028 60 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.38003823306966 180 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.46228287868401 360 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.65231964417595 600 Bmp4_gene_expression4_tgf +Bmp4_gene_expression_OE_nExpID100 model1_data15 1.000001 0 Bmp4_gene_expression4_tgf 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+S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 54.678567053965 120 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 76.5944204923567 240 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 96.6351266457576 600 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 100 0 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 50.7464883548244 30 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 43.4050786267768 60 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 48.1324784930032 90 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 54.678567053965 120 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 76.5944204923567 240 smad3_phosphorylation +S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 96.6351266457576 600 smad3_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.6895188927424 30 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.6895188927424 30 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.72437205747711 120 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 3.4816660487493 240 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.6895188927424 30 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 7.67016712536009 90 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.72437205747711 120 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 3.4816660487493 240 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.499728283081861 600 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.6895188927424 30 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 8.28952160074082 60 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 7.67016712536009 90 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.72437205747711 120 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 3.4816660487493 240 smad2_phosphorylation +S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.499728283081861 600 smad2_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.6895188927424 30 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 7.6701671253601 90 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.72437205747711 120 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 3.4816660487493 240 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.499728283081861 600 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.6895188927424 30 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 8.28952160074082 60 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 7.6701671253601 90 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 6.72437205747711 120 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 3.4816660487493 240 smad3_phosphorylation +S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0.499728283081861 600 smad3_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 42.5639927524332 30 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 42.5639927524332 30 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 38.5970608885579 120 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 19.923913458894 240 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 42.5639927524332 30 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 44.1973543816367 90 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 38.5970608885579 120 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 19.923913458894 240 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 2.86514507116059 600 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 42.5639927524332 30 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 48.3053997724824 60 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 44.1973543816367 90 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 38.5970608885579 120 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 19.923913458894 240 smad2_phosphorylation +S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 2.86514507116059 600 smad2_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 42.5639927524332 30 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 44.1973543816367 90 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 38.5970608885579 120 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 19.923913458894 240 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 2.86514507116059 600 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 0 0 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 42.5639927524332 30 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 48.3053997724824 60 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 44.1973543816367 90 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 38.5970608885579 120 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 19.923913458894 240 smad3_phosphorylation +S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 model1_data4 2.86514507116059 600 smad3_phosphorylation +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 142.781779487328 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 model1_data5 67.0231777556657 0 smad24_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 0 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 30 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 90 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 120 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 240 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684352 600 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 0 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 30 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 60 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 90 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 120 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684353 240 isoform_abundance +S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 89.7768667684352 600 isoform_abundance +S23IP_tS3_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 10.2231332315647 0 isoform_abundance +S23IP_tS3_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 10.2231332315647 30 isoform_abundance +S23IP_tS3_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 model1_data6 10.2231332315647 90 isoform_abundance +S23IP_tS3_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 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Pdk4_gene_expression2 +Pdk4_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Pdk4_gene_expression2 +Pdk4_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Pdk4_gene_expression2 +Pdk4_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Pdk4_gene_expression2 +Pdk4_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Pdk4_gene_expression2 +Pdk4_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Pdk4_gene_expression2 +Pdk4_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Pdk4_gene_expression2 +Pdk4_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Pdk4_gene_expression2 +Pdk4_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Pdk4_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Ski_gene_expression2 +Ski_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Ski_gene_expression2 +Skil_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Skil_gene_expression2 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+Skil_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Skil_gene_expression2 +Skil_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Skil_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Smad7_gene_expression2 +Smad7_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Smad7_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Sox4_gene_expression2 +Sox4_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Sox4_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 0 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 60 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 180 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 360 Tgfa_gene_expression2 +Tgfa_gene_expression_OE_nExpID100 model1_data9 1.000001 600 Tgfa_gene_expression2 diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018.tsv new file mode 100644 index 0000000..d62eed9 --- /dev/null +++ b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018.tsv @@ -0,0 +1,156 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure +plot1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S2IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset1 fig2, D, right +plot1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S2IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset2 fig2, D, right +plot1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S2IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset3 fig2, D, right +plot2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S3IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset4 fig2, D, right +plot2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S3IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset5 fig2, D, right +plot2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S3IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset6 fig2, D, right +plot3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S4IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset7 fig2, D, right +plot3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S4IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset8 fig2, D, right +plot3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S4IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset9 fig2, D, right +plot4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S23IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset10 fig2, D, right +plot4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S23IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset11 fig2, D, right +plot4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S23IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset12 fig2, D, right +plot5 MeanAndSD Smad2 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin nSmad2 S2IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset19 +plot5 MeanAndSD Smad2 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin pSmad2 S2IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset20 +plot5 MeanAndSD Smad2 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin ppSmad2 S2IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset21 +plot6 MeanAndSD Smad2/3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin nSmad2 S23IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset13 +plot6 MeanAndSD Smad2/3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin pSmad2 S23IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset14 +plot6 MeanAndSD Smad2/3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin ppSmad2 S23IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset15 +plot7 MeanAndSD Smad3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin nSmad3 S3IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset22 +plot7 MeanAndSD Smad3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin pSmad3 S3IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset23 +plot7 MeanAndSD Smad3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin ppSmad3 S3IP_ppS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset24 +plot8 MeanAndSD Smad2/3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin nSmad3 S23IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset16 +plot8 MeanAndSD Smad2/3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin pSmad3 S23IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset17 +plot8 MeanAndSD Smad2/3 LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin ppSmad3 S23IP_ppS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset18 +plot9 MeanAndSD Smad3 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin nSmad3 S3IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +plot9 MeanAndSD Smad3 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin pSmad3 S3IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +plot9 MeanAndSD Smad3 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin ppSmad3 S3IP_ppS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +plot9 MeanAndSD Smad3 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin nSmad2 S3IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +plot9 MeanAndSD Smad3 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin pSmad2 S3IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +plot9 MeanAndSD Smad3 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin ppSmad2 S3IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +plot10 MeanAndSD Smad2 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin nSmad2 S2IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +plot10 MeanAndSD Smad2 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin pSmad2 S2IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +plot10 MeanAndSD Smad2 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin ppSmad2 S2IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +plot10 MeanAndSD Smad2 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin nSmad3 S2IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +plot10 MeanAndSD Smad2 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin pSmad3 S2IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +plot10 MeanAndSD Smad2 BarPlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin ppSmad3 S2IP_ppS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +plot11 MeanAndSD Smad2/3 LinePlot time [min] lin molecules/cell (x10$^4$) lin nSmad2 S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C +plot11 MeanAndSD Smad2/3 LinePlot time [min] lin molecules/cell (x10$^4$) lin pSmad2 S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C +plot11 MeanAndSD Smad2/3 LinePlot time [min] lin molecules/cell (x10$^4$) lin ppSmad2 S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C +plot12 MeanAndSD Smad2/3 LinePlot time [min] lin molecules/cell (x10$^4$) lin nSmad3 S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C +plot12 MeanAndSD Smad2/3 LinePlot time [min] lin molecules/cell (x10$^4$) lin pSmad3 S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C +plot12 MeanAndSD Smad2/3 LinePlot time [min] lin molecules/cell (x10$^4$) lin ppSmad3 S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C +plot13 MeanAndSD Smad2/4 abundance BarPlot lin molecules/cell (x10$^4$) lin Smad2 S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 time 0 0 smad24_abundance fig1, A +plot13 MeanAndSD Smad2/4 abundance BarPlot lin molecules/cell (x10$^4$) lin Smad4 S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 time 0 0 smad24_abundance fig1, A +plot14 MeanAndSD Smad2/3 isoform abundance LinePlot time [min] lin molecules/cell (x10$^4$) lin Smad2 S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 time 0 0 isoform_abundance fig1, B +plot14 MeanAndSD Smad2/3 isoform abundance LinePlot time [min] lin molecules/cell (x10$^4$) lin Smad3 S23IP_tS3_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 time 0 0 isoform_abundance fig1, B +plot15 MeanAndSD BarPlot lin signal intensities (a.u., $10^7$) lin model1_data7 - TGFbR_PL_PN_TGFbR_hepa16_nExpID11 TGFbR_PL_PN_TGFbR_hepa16_nExpID11 time 0 0 TGF +plot16_1 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 model1_data8 – Ski_OE_nExpID100 Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression1 fig3, F +plot16_2 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 model1_data9 - Ski_OE_nExpID100 Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression2 fig3, F +plot16_3 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 model1_data10 - Ski_OE_nExpID100 Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression3 fig3, F +plot16_4 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 model1_data11 - Ski_OE_nExpID100 Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression4 fig3, F +plot16_1 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 model1_data12 - Ski_OE_nExpID100 Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression1_tgf fig3, F +plot16_2 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 model1_data13 - Ski_OE_nExpID100 Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression2_tgf fig3, F +plot16_3 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 model1_data14 - Ski_OE_nExpID100 Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression3_tgf fig3, F +plot16_4 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 model1_data15 - Ski_OE_nExpID100 Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression4_tgf fig3, F +plot17_1 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 model1_data8 - Skil_OE_nExpID100 Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression1 fig3, F +plot17_2 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 model1_data9 - Skil_OE_nExpID100 Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression2 fig3, F +plot17_3 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 model1_data10 - Skil_OE_nExpID100 Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression3 fig3, F +plot17_4 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 model1_data11 - Skil_OE_nExpID100 Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression4 fig3, F +plot17_1 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 model1_data12 - Skil_OE_nExpID100 Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression1_tgf fig3, F +plot17_2 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 model1_data13 - Skil_OE_nExpID100 Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression2_tgf fig3, F +plot17_3 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 model1_data14 - Skil_OE_nExpID100 Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression3_tgf fig3, F +plot17_4 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 model1_data15 - Skil_OE_nExpID100 Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression4_tgf fig3, F +plot18_1 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 model1_data8 - Dnmt3a_OE_nExpID100 Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression1 fig3, F +plot18_2 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 model1_data9 - Dnmt3a_OE_nExpID100 Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression2 fig3, F +plot18_3 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 model1_data10 - Dnmt3a_OE_nExpID100 Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression3 fig3, F +plot18_4 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 model1_data11 - Dnmt3a_OE_nExpID100 Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression4 fig3, F +plot18_1 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 model1_data12 - Dnmt3a_OE_nExpID100 Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression1_tgf fig3, F +plot18_2 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 model1_data13 - Dnmt3a_OE_nExpID100 Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression2_tgf fig3, F +plot18_3 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 model1_data14 - Dnmt3a_OE_nExpID100 Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression3_tgf fig3, F +plot18_4 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 model1_data15 - Dnmt3a_OE_nExpID100 Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression4_tgf fig3, F +plot19_1 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 model1_data8 - Sox4_OE_nExpID100 Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression1 fig3, F +plot19_2 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 model1_data9 - Sox4_OE_nExpID100 Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression2 fig3, F +plot19_3 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 model1_data10 - Sox4_OE_nExpID100 Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression3 fig3, F +plot19_4 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 model1_data11 - Sox4_OE_nExpID100 Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression4 fig3, F +plot19_1 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 model1_data12 - Sox4_OE_nExpID100 Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression1_tgf fig3, F +plot19_2 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 model1_data13 - Sox4_OE_nExpID100 Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression2_tgf fig3, F +plot19_3 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 model1_data14 - Sox4_OE_nExpID100 Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression3_tgf fig3, F +plot19_4 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 model1_data15 - Sox4_OE_nExpID100 Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression4_tgf fig3, F +plot20_1 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 model1_data8 - Jun_OE_nExpID100 Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression1 fig3, F +plot20_2 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 model1_data9 - Jun_OE_nExpID100 Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression2 fig3, F +plot20_3 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 model1_data10 - Jun_OE_nExpID100 Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression3 fig3, F +plot20_4 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 model1_data11 - Jun_OE_nExpID100 Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression4 fig3, F +plot20_1 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 model1_data12 - Jun_OE_nExpID100 Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression1_tgf fig3, F +plot20_2 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 model1_data13 - Jun_OE_nExpID100 Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression2_tgf fig3, F +plot20_3 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 model1_data14 - Jun_OE_nExpID100 Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression3_tgf fig3, F +plot20_4 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 model1_data15 - Jun_OE_nExpID100 Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression4_tgf fig3, F +plot21_1 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 model1_data8 - Smad7_OE_nExpID100 Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression1 fig3, F +plot21_2 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 model1_data9 - Smad7_OE_nExpID100 Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression2 fig3, F +plot21_3 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 model1_data10 - Smad7_OE_nExpID100 Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression3 fig3, F +plot21_4 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 model1_data11 - Smad7_OE_nExpID100 Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression4 fig3, F +plot21_1 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 model1_data12 - Smad7_OE_nExpID100 Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression1_tgf fig3, F +plot21_2 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 model1_data13 - Smad7_OE_nExpID100 Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression2_tgf fig3, F +plot21_3 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 model1_data14 - Smad7_OE_nExpID100 Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression3_tgf fig3, F +plot21_4 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 model1_data15 - Smad7_OE_nExpID100 Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression4_tgf fig3, F +plot22_1 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 model1_data8 - Klf10_OE_nExpID100 Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression1 fig3, F +plot22_2 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 model1_data9 - Klf10_OE_nExpID100 Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression2 fig3, F +plot22_3 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 model1_data10 - Klf10_OE_nExpID100 Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression3 fig3, F +plot22_4 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 model1_data11 - Klf10_OE_nExpID100 Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression4 fig3, F +plot22_1 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 model1_data12 - Klf10_OE_nExpID100 Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression1_tgf fig3, F +plot22_2 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 model1_data13 - Klf10_OE_nExpID100 Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression2_tgf fig3, F +plot22_3 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 model1_data14 - Klf10_OE_nExpID100 Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression3_tgf fig3, F +plot22_4 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 model1_data15 - Klf10_OE_nExpID100 Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression4_tgf fig3, F +plot23_1 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 model1_data8 - Bmp4_OE_nExpID100 Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression1 fig3, F +plot23_2 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 model1_data9 - Bmp4_OE_nExpID100 Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression2 fig3, F +plot23_3 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 model1_data10 - Bmp4_OE_nExpID100 Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression3 fig3, F +plot23_4 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 model1_data11 - Bmp4_OE_nExpID100 Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression4 fig3, F +plot23_1 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 model1_data12 - Bmp4_OE_nExpID100 Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression1_tgf fig3, F +plot23_2 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 model1_data13 - Bmp4_OE_nExpID100 Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression2_tgf fig3, F +plot23_3 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 model1_data14 - Bmp4_OE_nExpID100 Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression3_tgf fig3, F +plot23_4 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 model1_data15 - Bmp4_OE_nExpID100 Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression4_tgf fig3, F +plot24_1 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 model1_data8 - Cxcl15_OE_nExpID100 Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression1 fig3, F +plot24_2 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 model1_data9 - Cxcl15_OE_nExpID100 Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression2 fig3, F +plot24_3 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 model1_data10 - Cxcl15_OE_nExpID100 Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression3 fig3, F +plot24_4 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 model1_data11 - Cxcl15_OE_nExpID100 Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression4 fig3, F +plot24_1 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 model1_data12 - Cxcl15_OE_nExpID100 Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression1_tgf fig3, F +plot24_2 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 model1_data13 - Cxcl15_OE_nExpID100 Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression2_tgf fig3, F +plot24_3 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 model1_data14 - Cxcl15_OE_nExpID100 Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression3_tgf fig3, F +plot24_4 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 model1_data15 - Cxcl15_OE_nExpID100 Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression4_tgf fig3, F +plot25_1 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 model1_data8 - Dusp5_OE_nExpID100 Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression1 fig3, F +plot25_2 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 model1_data9 - Dusp5_OE_nExpID100 Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression2 fig3, F +plot25_3 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 model1_data10 - Dusp5_OE_nExpID100 Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression3 fig3, F +plot25_4 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 model1_data11 - Dusp5_OE_nExpID100 Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression4 fig3, F +plot25_1 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 model1_data12 - Dusp5_OE_nExpID100 Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression1_tgf fig3, F +plot25_2 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 model1_data13 - Dusp5_OE_nExpID100 Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression2_tgf fig3, F +plot25_3 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 model1_data14 - Dusp5_OE_nExpID100 Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression3_tgf fig3, F +plot25_4 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 model1_data15 - Dusp5_OE_nExpID100 Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression4_tgf fig3, F +plot26_1 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 model1_data8 - Tgfa_OE_nExpID100 Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression1 fig3, F +plot26_2 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 model1_data9 - Tgfa_OE_nExpID100 Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression2 fig3, F +plot26_3 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 model1_data10 - Tgfa_OE_nExpID100 Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression3 fig3, F +plot26_4 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 model1_data11 - Tgfa_OE_nExpID100 Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression4 fig3, F +plot26_1 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 model1_data12 - Tgfa_OE_nExpID100 Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression1_tgf fig3, F +plot26_2 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 model1_data13 - Tgfa_OE_nExpID100 Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression2_tgf fig3, F +plot26_3 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 model1_data14 - Tgfa_OE_nExpID100 Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression3_tgf fig3, F +plot26_4 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 model1_data15 - Tgfa_OE_nExpID100 Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression4_tgf fig3, F +plot27_1 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 model1_data8 - Pdk4_OE_nExpID100 Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression1 fig3, F +plot27_2 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 model1_data9 - Pdk4_OE_nExpID100 Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression2 fig3, F +plot27_3 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 model1_data10 - Pdk4_OE_nExpID100 Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression3 fig3, F +plot27_4 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 model1_data11 - Pdk4_OE_nExpID100 Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression4 fig3, F +plot27_1 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 model1_data12 - Pdk4_OE_nExpID100 Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression1_tgf fig3, F +plot27_2 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 model1_data13 - Pdk4_OE_nExpID100 Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression2_tgf fig3, F +plot27_3 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 model1_data14 - Pdk4_OE_nExpID100 Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression3_tgf fig3, F +plot27_4 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 model1_data15 - Pdk4_OE_nExpID100 Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression4_tgf fig3, F +plot28 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin S2IP_tS2_MSPL2_complexes_all_nExpID6 S2IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot28 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin S2IP_tS3_MSPL2_complexes_all_nExpID6 S2IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot28 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin S2IP_tS4_MSPL2_complexes_all_nExpID6 S2IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot29 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin S3IP_tS2_MSPL2_complexes_all_nExpID6 S3IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot29 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin S3IP_tS3_MSPL2_complexes_all_nExpID6 S3IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot29 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin S3IP_tS4_MSPL2_complexes_all_nExpID6 S3IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot30 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin S4IP_tS2_MSPL2_complexes_all_nExpID6 S4IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot30 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin S4IP_tS3_MSPL2_complexes_all_nExpID6 S4IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot30 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin S4IP_tS4_MSPL2_complexes_all_nExpID6 S4IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +plot31 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin relative abundance [%] lin nSmad2 S2IP_S2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 dataset25 +plot31 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin relative abundance [%] lin pSmad2 S2IP_pS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 dataset25 +plot31 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin relative abundance [%] lin ppSmad2 S2IP_ppS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 dataset25 diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure1.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure1.tsv new file mode 100644 index 0000000..2215fd0 --- /dev/null +++ b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure1.tsv @@ -0,0 +1,23 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure +Fig1A MeanAndSD Smad2/4 abundance BarPlot lin molecules/cell (x10$^4$) lin Smad2 S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 time 0 0 smad24_abundance fig1, A +Fig1A MeanAndSD Smad2/4 abundance BarPlot lin molecules/cell (x10$^4$) lin Smad4 S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 time 0 0 smad24_abundance fig1, A +Fig1B MeanAndSD Smad2/3 isoform abundance LinePlot time [min] lin molecules/cell (x10$^4$) lin Smad2 S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 time 0 0 isoform_abundance fig1, B +Fig1B MeanAndSD Smad2/3 isoform abundance LinePlot time [min] lin molecules/cell (x10$^4$) lin Smad3 S23IP_tS3_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 time 0 0 isoform_abundance fig1, B +Fig1C_1 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin nSmad2 S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C +Fig1C_1 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin pSmad2 S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C +Fig1C_1 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin ppSmad2 S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C +Fig1C_2 MeanAndSD Smad3 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin nSmad3 S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C +Fig1C_2 MeanAndSD Smad3 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin pSmad3 S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C +Fig1C_2 MeanAndSD Smad3 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin ppSmad3 S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C +Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin nSmad2 S2IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin pSmad2 S2IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin ppSmad2 S2IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin nSmad3 S2IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin pSmad3 S2IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin ppSmad3 S2IP_ppS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left +Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin nSmad3 S3IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin pSmad3 S3IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin ppSmad3 S3IP_ppS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin nSmad2 S3IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin pSmad2 S3IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right +Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin ppSmad2 S3IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure2.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure2.tsv new file mode 100644 index 0000000..0c8909d --- /dev/null +++ b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure2.tsv @@ -0,0 +1,22 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure +Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S2IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset1 fig2, D, right +Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S2IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset2 fig2, D, right +Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S2IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset3 fig2, D, right +Fig2D_right_2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S3IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset4 fig2, D, right +Fig2D_right_2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S3IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset5 fig2, D, right +Fig2D_right_2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S3IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset6 fig2, D, right +Fig2D_right_3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S4IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset7 fig2, D, right +Fig2D_right_3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S4IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset8 fig2, D, right +Fig2D_right_3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S4IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset9 fig2, D, right +Fig2D_right_4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S23IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset10 fig2, D, right +Fig2D_right_4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S23IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset11 fig2, D, right +Fig2D_right_4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S23IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset12 fig2, D, right +Fig2D_left_1 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin Smad2 S2IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +Fig2D_left_1 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin Smad3 S2IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +Fig2D_left_1 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin Smad4 S2IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +Fig2D_left_2 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin Smad2 S3IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +Fig2D_left_2 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin Smad3 S3IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +Fig2D_left_2 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin Smad4 S3IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +Fig2D_left_3 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin Smad2 S4IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +Fig2D_left_3 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin Smad3 S4IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left +Fig2D_left_3 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin Smad4 S4IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_1.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_1.tsv new file mode 100644 index 0000000..2b7a8d2 --- /dev/null +++ b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_1.tsv @@ -0,0 +1,25 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure +Fig3F_Ski_1 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression1 fig3, F +Fig3F_Ski_1 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression1_tgf fig3, F +Fig3F_Skil_1 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression1 fig3, F +Fig3F_Skil_1 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression1_tgf fig3, F +Fig3F_Dnmt3a_1 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 untreated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression1 fig3, F +Fig3F_Dnmt3a_1 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression1_tgf fig3, F +Fig3F_Sox4_1 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 untreated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression1 fig3, F +Fig3F_Sox4_1 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression1_tgf fig3, F +Fig3F_Jun_1 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 untreated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression1 fig3, F +Fig3F_Jun_1 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression1_tgf fig3, F +Fig3F_Smad7_1 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 untreated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression1 fig3, F +Fig3F_Smad7_1 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression1_tgf fig3, F +Fig3F_Klf10_1 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 untreated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression1 fig3, F +Fig3F_Klf10_1 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression1_tgf fig3, F +Fig3F_Bmp4_1 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 untreated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression1 fig3, F +Fig3F_Bmp4_1 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression1_tgf fig3, F +Fig3F_Cxcl15_1 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 untreated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression1 fig3, F +Fig3F_Cxcl15_1 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression1_tgf fig3, F +Fig3F_Dusp5_1 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 untreated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression1 fig3, F +Fig3F_Dusp5_1 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression1_tgf fig3, F +Fig3F_Tgfa_1 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 untreated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression1 fig3, F +Fig3F_Tgfa_1 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression1_tgf fig3, F +Fig3F_Pdk4_1 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 untreated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression1 fig3, F +Fig3F_Pdk4_1 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression1_tgf fig3, F diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_2.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_2.tsv new file mode 100644 index 0000000..1a3e01d --- /dev/null +++ b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_2.tsv @@ -0,0 +1,25 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure +Fig3F_Ski_2 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression2 fig3, F +Fig3F_Ski_2 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression2_tgf fig3, F +Fig3F_Skil_2 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression2 fig3, F +Fig3F_Skil_2 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression2_tgf fig3, F +Fig3F_Dnmt3a_2 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 untreated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression2 fig3, F +Fig3F_Dnmt3a_2 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression2_tgf fig3, F +Fig3F_Sox4_2 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 untreated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression2 fig3, F +Fig3F_Sox4_2 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression2_tgf fig3, F +Fig3F_Jun_2 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 untreated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression2 fig3, F +Fig3F_Jun_2 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression2_tgf fig3, F +Fig3F_Smad7_2 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 untreated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression2 fig3, F +Fig3F_Smad7_2 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression2_tgf fig3, F +Fig3F_Klf10_2 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 untreated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression2 fig3, F +Fig3F_Klf10_2 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression2_tgf fig3, F +Fig3F_Bmp4_2 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 untreated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression2 fig3, F +Fig3F_Bmp4_2 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression2_tgf fig3, F +Fig3F_Cxcl15_2 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 untreated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression2 fig3, F +Fig3F_Cxcl15_2 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression2_tgf fig3, F +Fig3F_Dusp5_2 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 untreated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression2 fig3, F +Fig3F_Dusp5_2 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression2_tgf fig3, F +Fig3F_Tgfa_2 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 untreated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression2 fig3, F +Fig3F_Tgfa_2 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression2_tgf fig3, F +Fig3F_Pdk4_2 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 untreated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression2 fig3, F +Fig3F_Pdk4_2 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression2_tgf fig3, F diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_3.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_3.tsv new file mode 100644 index 0000000..1e5e521 --- /dev/null +++ b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_3.tsv @@ -0,0 +1,25 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure +Fig3F_Ski_3 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression3 fig3, F +Fig3F_Ski_3 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression3_tgf fig3, F +Fig3F_Skil_3 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression3 fig3, F +Fig3F_Skil_3 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression3_tgf fig3, F +Fig3F_Dnmt3a_3 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 untreated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression3 fig3, F +Fig3F_Dnmt3a_3 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression3_tgf fig3, F +Fig3F_Sox4_3 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 untreated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression3 fig3, F +Fig3F_Sox4_3 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression3_tgf fig3, F +Fig3F_Jun_3 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 untreated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression3 fig3, F +Fig3F_Jun_3 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression3_tgf fig3, F +Fig3F_Smad7_3 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 untreated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression3 fig3, F +Fig3F_Smad7_3 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression3_tgf fig3, F +Fig3F_Klf10_3 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 untreated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression3 fig3, F +Fig3F_Klf10_3 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression3_tgf fig3, F +Fig3F_Bmp4_3 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 untreated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression3 fig3, F +Fig3F_Bmp4_3 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression3_tgf fig3, F +Fig3F_Cxcl15_3 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 untreated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression3 fig3, F +Fig3F_Cxcl15_3 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression3_tgf fig3, F +Fig3F_Dusp5_3 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 untreated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression3 fig3, F +Fig3F_Dusp5_3 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression3_tgf fig3, F +Fig3F_Tgfa_3 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 untreated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression3 fig3, F +Fig3F_Tgfa_3 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression3_tgf fig3, F +Fig3F_Pdk4_3 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 untreated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression3 fig3, F +Fig3F_Pdk4_3 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression3_tgf fig3, F diff --git a/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_4.tsv b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_4.tsv new file mode 100644 index 0000000..c46b203 --- /dev/null +++ b/Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_4.tsv @@ -0,0 +1,25 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure +Fig3F_Ski_4 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression4 fig3, F +Fig3F_Ski_4 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression4_tgf fig3, F +Fig3F_Skil_4 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression4 fig3, F +Fig3F_Skil_4 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression4_tgf fig3, F +Fig3F_Dnmt3a_4 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 untreated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression4 fig3, F +Fig3F_Dnmt3a_4 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression4_tgf fig3, F +Fig3F_Sox4_4 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 untreated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression4 fig3, F +Fig3F_Sox4_4 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression4_tgf fig3, F +Fig3F_Jun_4 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 untreated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression4 fig3, F +Fig3F_Jun_4 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression4_tgf fig3, F +Fig3F_Smad7_4 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 untreated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression4 fig3, F +Fig3F_Smad7_4 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression4_tgf fig3, F +Fig3F_Klf10_4 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 untreated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression4 fig3, F +Fig3F_Klf10_4 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression4_tgf fig3, F +Fig3F_Bmp4_4 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 untreated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression4 fig3, F +Fig3F_Bmp4_4 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression4_tgf fig3, F +Fig3F_Cxcl15_4 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 untreated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression4 fig3, F +Fig3F_Cxcl15_4 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression4_tgf fig3, F +Fig3F_Dusp5_4 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 untreated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression4 fig3, F +Fig3F_Dusp5_4 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression4_tgf fig3, F +Fig3F_Tgfa_4 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 untreated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression4 fig3, F +Fig3F_Tgfa_4 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression4_tgf fig3, F +Fig3F_Pdk4_4 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 untreated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression4 fig3, F +Fig3F_Pdk4_4 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression4_tgf fig3, F