From 542ca38d244de5bf9ec231aa97e7313759e27009 Mon Sep 17 00:00:00 2001 From: Stephan Grein Date: Thu, 27 Jun 2024 12:19:52 +0200 Subject: [PATCH 1/7] Fix visualization specification for Zhao. --- ...sualizationSpecification_Zhao_QuantBiol2020.tsv | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/Benchmark-Models/Zhao_QuantBiol2020/visualizationSpecification_Zhao_QuantBiol2020.tsv b/Benchmark-Models/Zhao_QuantBiol2020/visualizationSpecification_Zhao_QuantBiol2020.tsv index 3655c20..42f078a 100644 --- a/Benchmark-Models/Zhao_QuantBiol2020/visualizationSpecification_Zhao_QuantBiol2020.tsv +++ b/Benchmark-Models/Zhao_QuantBiol2020/visualizationSpecification_Zhao_QuantBiol2020.tsv @@ -1,8 +1,8 @@ plotId plotName plotTypeSimulation plotTypeData datasetId xValues xOffset xLabel yValues yOffset yLabel legendEntry xScale yScale -plot1 China_Stage_I LinePlot model1_data_observable_confirmed_infected_China_Stage_I time -30 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot2 China_Stage_II LinePlot model1_data_observable_confirmed_infected_China_Stage_II time 0 Time [d] from 2020-1-30 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot3 Wuhan_Stage_I LinePlot model1_data_observable_confirmed_infected_Wuhan_Stage_I time -15 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot4 Wuhan_Stage_II LinePlot model1_data_observable_confirmed_infected_Wuhan_Stage_II time 0 Time [d] from 2020-1-28 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot5 Wuhan_Stage_III LinePlot model1_data_observable_confirmed_infected_Wuhan_Stage_III time 0 Time [d] from 2020-2-13 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot6 Hubei_Stage_I LinePlot model1_data_observable_confirmed_infected_Hubei_Stage_I time -15 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot7 Hubei_Stage_II LinePlot model1_data_observable_confirmed_infected_Hubei_Stage_II time 0 Time [d] from 2020-1-28 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot1 China_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_China_Stage_I time -30 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot2 China_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_China_Stage_II time 0 Time [d] from 2020-1-30 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot3 Wuhan_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_I time -15 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot4 Wuhan_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_II time 0 Time [d] from 2020-1-28 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot5 Wuhan_Stage_III LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_III time 0 Time [d] from 2020-2-13 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot6 Hubei_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_Hubei_Stage_I time -15 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot7 Hubei_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_Hubei_Stage_II time 0 Time [d] from 2020-1-28 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin From 8f39b744b187be86f3532b25d7e3491ffe26f9ad Mon Sep 17 00:00:00 2001 From: Stephan Grein Date: Thu, 27 Jun 2024 14:14:51 +0200 Subject: [PATCH 2/7] Fix. --- ...sualizationSpecification_Zhao_QuantBiol2020.tsv | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/Benchmark-Models/Zhao_QuantBiol2020/visualizationSpecification_Zhao_QuantBiol2020.tsv b/Benchmark-Models/Zhao_QuantBiol2020/visualizationSpecification_Zhao_QuantBiol2020.tsv index 42f078a..50e7e92 100644 --- a/Benchmark-Models/Zhao_QuantBiol2020/visualizationSpecification_Zhao_QuantBiol2020.tsv +++ b/Benchmark-Models/Zhao_QuantBiol2020/visualizationSpecification_Zhao_QuantBiol2020.tsv @@ -1,8 +1,8 @@ plotId plotName plotTypeSimulation plotTypeData datasetId xValues xOffset xLabel yValues yOffset yLabel legendEntry xScale yScale -plot1 China_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_China_Stage_I time -30 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot2 China_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_China_Stage_II time 0 Time [d] from 2020-1-30 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot3 Wuhan_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_I time -15 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot4 Wuhan_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_II time 0 Time [d] from 2020-1-28 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot5 Wuhan_Stage_III LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_III time 0 Time [d] from 2020-2-13 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot6 Hubei_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_Hubei_Stage_I time -15 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin -plot7 Hubei_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_Hubei_Stage_II time 0 Time [d] from 2020-1-28 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot1 China_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_China_Stage_I time -30 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot2 China_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_China_Stage_II time 0 Time [d] from 2020-1-30 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot3 Wuhan_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_I time -15 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot4 Wuhan_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_II time 0 Time [d] from 2020-1-28 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot5 Wuhan_Stage_III LinePlot MeanAndSD model1_data_observable_confirmed_infected_Wuhan_Stage_III time 0 Time [d] from 2020-2-13 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot6 Hubei_Stage_I LinePlot MeanAndSD model1_data_observable_confirmed_infected_Hubei_Stage_I time -15 Time [d] from 2020-1-20 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin +plot7 Hubei_Stage_II LinePlot MeanAndSD model1_data_observable_confirmed_infected_Hubei_Stage_II time 0 Time [d] from 2020-1-28 observable_confirmed_infected 0 Cumulative confirmed infected number Confirmed_Infected lin lin From 673817fbdcdd8493df40efcf21dc782bcf13b160 Mon Sep 17 00:00:00 2001 From: Stephan Grein Date: Thu, 20 Nov 2025 09:27:53 +0100 Subject: [PATCH 3/7] Adding unit for x-axis label for Giordano. --- ...lizationSpecification_Giordano_Nature2020.tsv | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/Benchmark-Models/Giordano_Nature2020/visualizationSpecification_Giordano_Nature2020.tsv b/Benchmark-Models/Giordano_Nature2020/visualizationSpecification_Giordano_Nature2020.tsv index a3bd2b0..d7bc74b 100644 --- a/Benchmark-Models/Giordano_Nature2020/visualizationSpecification_Giordano_Nature2020.tsv +++ b/Benchmark-Models/Giordano_Nature2020/visualizationSpecification_Giordano_Nature2020.tsv @@ -1,8 +1,8 @@ -plotId plotName plotTypeSimulation xValues yValues yLabel legendEntry xScale yScale datasetId -TotalDiagnosedCases Data vs Sim TotalDiagnosedCases Data vs Sim LinePlot time observable_TotalCases TotalCases TotalCases lin lin test -Deaths Data vs Sim Deaths Data vs Sim LinePlot time observable_Deaths Deaths Deaths lin lin test -Recovered Data vs Sim Recovered Data vs Sim LinePlot time observable_Recovered Recovered Recovered lin lin test -CurrentDiagnosedCases Data vs Sim CurrentDiagnosedCases Data vs Sim LinePlot time observable_CurrentCases CurrentCases CurrentCases lin lin test -Diagnosed Data vs Sim Diagnosed Data vs Sim LinePlot time observable_DiagHome Diagnosed Diagnosed lin lin test -Recognized Data vs Sim Recognized Data vs Sim LinePlot time observable_Hospit Recognized Recognized lin lin test -Threatened Data vs Sim Threatened Data vs Sim LinePlot time observable_ICU Threatened Threatened lin lin test +plotId plotName plotTypeSimulation xValues yValues yLabel legendEntry xScale yScale datasetId xLabel +TotalDiagnosedCases Data vs Sim TotalDiagnosedCases Data vs Sim LinePlot time observable_TotalCases TotalCases TotalCases lin lin test Time [days] +Deaths Data vs Sim Deaths Data vs Sim LinePlot time observable_Deaths Deaths Deaths lin lin test Time [days] +Recovered Data vs Sim Recovered Data vs Sim LinePlot time observable_Recovered Recovered Recovered lin lin test Time[days] +CurrentDiagnosedCases Data vs Sim CurrentDiagnosedCases Data vs Sim LinePlot time observable_CurrentCases CurrentCases CurrentCases lin lin test Time [days] +Diagnosed Data vs Sim Diagnosed Data vs Sim LinePlot time observable_DiagHome Diagnosed Diagnosed lin lin test Time [days] +Recognized Data vs Sim Recognized Data vs Sim LinePlot time observable_Hospit Recognized Recognized lin lin test Time [days] +Threatened Data vs Sim Threatened Data vs Sim LinePlot time observable_ICU Threatened Threatened lin lin test Time [days] From 7e2522fe7ac336cef6b464a1eab57324b1ecfe6f Mon Sep 17 00:00:00 2001 From: stephanmg Date: Thu, 20 Nov 2025 09:32:29 +0100 Subject: [PATCH 4/7] Adding unit for x-axis label for Okuonghae --- ...ionSpecification_Okuonghae_ChaosSolitonsFractals2020.tsv | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Benchmark-Models/Okuonghae_ChaosSolitonsFractals2020/visualizationSpecification_Okuonghae_ChaosSolitonsFractals2020.tsv b/Benchmark-Models/Okuonghae_ChaosSolitonsFractals2020/visualizationSpecification_Okuonghae_ChaosSolitonsFractals2020.tsv index ff39339..dabda76 100644 --- a/Benchmark-Models/Okuonghae_ChaosSolitonsFractals2020/visualizationSpecification_Okuonghae_ChaosSolitonsFractals2020.tsv +++ b/Benchmark-Models/Okuonghae_ChaosSolitonsFractals2020/visualizationSpecification_Okuonghae_ChaosSolitonsFractals2020.tsv @@ -1,3 +1,3 @@ -plotId plotTypeSimulation xValues yValues yLabel datasetId legendEntry -ActiveCases Sim vs Data LinePlot time observable_ActiveCases Number of Active Cases id1 Activecases -Cumulative Sim vs Data LinePlot time observable_Cumulative Number of Cumulative Cases id1 CumCases +plotId plotTypeSimulation xValues yValues yLabel datasetId legendEntry xLabel +ActiveCases Sim vs Data LinePlot time observable_ActiveCases Number of Active Cases id1 Activecases Time [days] +Cumulative Sim vs Data LinePlot time observable_Cumulative Number of Cumulative Cases id1 CumCases Time [days] From 36aea3b678fb453af97b8ae38f8c5eb0a09faedf Mon Sep 17 00:00:00 2001 From: Stephan Grein Date: Thu, 20 Nov 2025 09:52:53 +0100 Subject: [PATCH 5/7] Correct cation superscripts for Sneyd. --- ...sualizationSpecification_Sneyd_PNAS2002.tsv | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002.tsv b/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002.tsv index 814db5f..0ccea48 100644 --- a/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002.tsv +++ b/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002.tsv @@ -1,10 +1,10 @@ plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale datasetId legendEntry yValues xValues xOffset yOffset -plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__1_open_probability 10 μM IP_3, 0.1 μM Ca^{2+} - open_probability open_probability time 0 0 -plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__2_open_probability 10 μM IP_3, 0.2 μM Ca^{2+} - open_probability open_probability time 0 0 -plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__3_open_probability 10 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 -plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__4_open_probability 10 μM IP_3, 1 μM Ca^{2+} - open_probability open_probability time 0 0 -plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__5_open_probability 10 μM IP_3, 3 μM Ca^{2+} - open_probability open_probability time 0 0 -plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__6_open_probability 10 μM IP_3, 10 μM Ca^{2+} - open_probability open_probability time 0 0 -plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__1_open_probability 3 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 -plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__2_open_probability 5 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 -plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__3_open_probability 10 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__1_open_probability 10 μM IP_3, 0.1 μM $Ca^{2+}$ - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__2_open_probability 10 μM IP_3, 0.2 μM $Ca^{2+}$ - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__3_open_probability 10 μM IP_3, 0.4 μM $Ca^{2+}$ - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__4_open_probability 10 μM IP_3, 1 μM $Ca^{2+}$ - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__5_open_probability 10 μM IP_3, 3 μM $Ca^{2+}$ - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__6_open_probability 10 μM IP_3, 10 μM $Ca^{2+}$ - open_probability open_probability time 0 0 +plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__1_open_probability 3 μM IP_3, 0.4 μM $Ca^{2+}$ - open_probability open_probability time 0 0 +plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__2_open_probability 5 μM IP_3, 0.4 μM $Ca^{2+}$ - open_probability open_probability time 0 0 +plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__3_open_probability 10 μM IP_3, 0.4 μM $Ca^{2+}$ - open_probability open_probability time 0 0 From 10294332c323f06b57527c6327aaa53d932e98c9 Mon Sep 17 00:00:00 2001 From: Stephan Grein Date: Thu, 20 Nov 2025 09:58:29 +0100 Subject: [PATCH 6/7] Adding unit for x-axis label for Zheng --- ...ualizationSpecification_Zheng_PNAS2012.tsv | 30 +++++++++---------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/Benchmark-Models/Zheng_PNAS2012/visualizationSpecification_Zheng_PNAS2012.tsv b/Benchmark-Models/Zheng_PNAS2012/visualizationSpecification_Zheng_PNAS2012.tsv index cb435b8..edf37d1 100644 --- a/Benchmark-Models/Zheng_PNAS2012/visualizationSpecification_Zheng_PNAS2012.tsv +++ b/Benchmark-Models/Zheng_PNAS2012/visualizationSpecification_Zheng_PNAS2012.tsv @@ -1,16 +1,16 @@ plotId plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset -plot1 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me0K36me0 observable_K27me0K36me0 time 0 0 -plot2 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me0K36me1 observable_K27me0K36me1 time 0 0 -plot3 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me1K36me0 observable_K27me1K36me0 time 0 0 -plot4 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me0K36me2 observable_K27me0K36me2 time 0 0 -plot5 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me1K36me1 observable_K27me1K36me1 time 0 0 -plot6 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me2K36me0 observable_K27me2K36me0 time 0 0 -plot7 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me0K36me3 observable_K27me0K36me3 time 0 0 -plot8 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me1K36me2 observable_K27me1K36me2 time 0 0 -plot9 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me2K36me1 observable_K27me2K36me1 time 0 0 -plot10 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me3K36me0 observable_K27me3K36me0 time 0 0 -plot11 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me1K36me3 observable_K27me1K36me3 time 0 0 -plot12 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me2K36me2 observable_K27me2K36me2 time 0 0 -plot13 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me3K36me1 observable_K27me3K36me1 time 0 0 -plot14 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me2K36me3 observable_K27me2K36me3 time 0 0 -plot15 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me3K36me2 observable_K27me3K36me2 time 0 0 +plot1 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me0K36me0 observable_K27me0K36me0 time 0 0 +plot2 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me0K36me1 observable_K27me0K36me1 time 0 0 +plot3 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me1K36me0 observable_K27me1K36me0 time 0 0 +plot4 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me0K36me2 observable_K27me0K36me2 time 0 0 +plot5 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me1K36me1 observable_K27me1K36me1 time 0 0 +plot6 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me2K36me0 observable_K27me2K36me0 time 0 0 +plot7 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me0K36me3 observable_K27me0K36me3 time 0 0 +plot8 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me1K36me2 observable_K27me1K36me2 time 0 0 +plot9 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me2K36me1 observable_K27me2K36me1 time 0 0 +plot10 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me3K36me0 observable_K27me3K36me0 time 0 0 +plot11 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me1K36me3 observable_K27me1K36me3 time 0 0 +plot12 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me2K36me2 observable_K27me2K36me2 time 0 0 +plot13 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me3K36me1 observable_K27me3K36me1 time 0 0 +plot14 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me2K36me3 observable_K27me2K36me3 time 0 0 +plot15 MeanAndSD LinePlot Time [s] lin values lin simCondition - observable_K27me3K36me2 observable_K27me3K36me2 time 0 0 From 2d746acd63e0b13a2f8d9809c3bc1692eb1d8d74 Mon Sep 17 00:00:00 2001 From: Stephan Grein Date: Thu, 20 Nov 2025 10:05:01 +0100 Subject: [PATCH 7/7] Consistent capitalization for Brannmark. --- .../visualizationSpecification_Brannmark_JBC2010.tsv | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Benchmark-Models/Brannmark_JBC2010/visualizationSpecification_Brannmark_JBC2010.tsv b/Benchmark-Models/Brannmark_JBC2010/visualizationSpecification_Brannmark_JBC2010.tsv index 534401d..fa0a6dc 100644 --- a/Benchmark-Models/Brannmark_JBC2010/visualizationSpecification_Brannmark_JBC2010.tsv +++ b/Benchmark-Models/Brannmark_JBC2010/visualizationSpecification_Brannmark_JBC2010.tsv @@ -1,5 +1,5 @@ plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale yValues xValues xOffset yOffset datasetId -plot1 MeanAndSD LinePlot time [min] lin IR phosphorylation lin IR1_P time 0 0 Dose_100 -plot2 MeanAndSD LinePlot time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 Dose_100 +plot1 MeanAndSD LinePlot Time [min] lin IR phosphorylation lin IR1_P time 0 0 Dose_100 +plot2 MeanAndSD LinePlot Time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 Dose_100 plot3 MeanAndSD LinePlot Insulin [nM] log10 IRS1 phosphorylation lin IRS1_P_DosR insulin_dose_1 0 0 DosR -plot4 MeanAndSD LinePlot time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 TwoSteps +plot4 MeanAndSD LinePlot Time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 TwoSteps