From e7ab90b3cdcdc28572ff6b7845ff22d2355b07c4 Mon Sep 17 00:00:00 2001
From: Yi Sun <yi.sun@embl.de>
Date: Thu, 8 May 2025 15:37:15 +0200
Subject: [PATCH 1/3] add ilastik1.4.1

---
 ilastik/1.4.1/Dockerfile    | 55 +++++++++++++++++++++++++++++++++++++
 ilastik/1.4.1/test-cmds.txt |  1 +
 2 files changed, 56 insertions(+)
 create mode 100644 ilastik/1.4.1/Dockerfile
 create mode 100644 ilastik/1.4.1/test-cmds.txt

diff --git a/ilastik/1.4.1/Dockerfile b/ilastik/1.4.1/Dockerfile
new file mode 100644
index 00000000..0c68ec0d
--- /dev/null
+++ b/ilastik/1.4.1/Dockerfile
@@ -0,0 +1,55 @@
+FROM ubuntu:22.04 
+
+LABEL base_image="ubuntu:22.04"
+LABEL version="1"
+LABEL software="ilastik"
+LABEL software.version="1.4.1"
+LABEL about.summary="the interactive learning and segmentation toolkit"
+LABEL about.home="https://ilastik.org"
+LABEL about.license="GPL-2.0-or-later"
+LABEL about.license_file="https://github.com/ilastik/ilastik/blob/main/LICENSE"
+LABEL about.documentation="https://ilastik.org/documentation/index.html"
+LABEL extra.identifiers.biotools=ilastik
+
+
+MAINTAINER Yi Sun <sunyi000@gmail.com>
+
+
+ARG DEBIAN_FRONTEND="noninteractive"
+ARG ILASTIK_VERSION="1.4.1"
+
+ENV LANG=en_US.UTF-8 \
+    LC_ALL=en_US.UTF-8 \
+    LANGUAGE=en_US:en  \
+    QT_XCB_NO_MITSHM=1 \
+    LAZYFLOW_THREADS=2 \
+    LAZYFLOW_TOTAL_RAM_MB=32000 \
+    NUMBA_CACHE_DIR=/tmp/numba_cache \
+    BIOIMAGEIO_CACHE_PATH="/tmp/pybio_cache" \
+    PATH="/opt/ilastik-$ILASTIK_VERSION-Linux:$PATH"
+
+RUN apt-get update -qq && \
+    apt-get install -y  \
+            apt-utils \
+            locales \
+            build-essential \
+            libglu1-mesa-dev \
+            qtcreator \
+            libgl1-mesa-glx \
+            nautilus \
+            xdg-utils \
+            wget && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/* 
+
+
+RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen && \
+    locale-gen
+
+WORKDIR /opt/
+RUN wget https://files.ilastik.org/ilastik-1.4.1-gpu-Linux.tar.bz2 && \
+    tar xjf ilastik-1.*-Linux.tar.bz2 && \
+    rm -f ilastik-1.*-Linux.tar.bz2
+
+
+#ENTRYPOINT["run_ilastik.sh"]
diff --git a/ilastik/1.4.1/test-cmds.txt b/ilastik/1.4.1/test-cmds.txt
new file mode 100644
index 00000000..6f4b3614
--- /dev/null
+++ b/ilastik/1.4.1/test-cmds.txt
@@ -0,0 +1 @@
+/opt/ilastik-1.4.0-Linux/run_ilastik.sh --headless --version

From cef7db5f3b1ff7498fa4e6856470de15bdf666de Mon Sep 17 00:00:00 2001
From: mboudet <mateo.boudet@gmail.com>
Date: Mon, 12 May 2025 09:40:35 +0200
Subject: [PATCH 2/3] Update test-cmds.txt

---
 ilastik/1.4.1/test-cmds.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ilastik/1.4.1/test-cmds.txt b/ilastik/1.4.1/test-cmds.txt
index 6f4b3614..debf9d52 100644
--- a/ilastik/1.4.1/test-cmds.txt
+++ b/ilastik/1.4.1/test-cmds.txt
@@ -1 +1 @@
-/opt/ilastik-1.4.0-Linux/run_ilastik.sh --headless --version
+/opt/ilastik-1.4.1-Linux/run_ilastik.sh --headless --version

From 32af15521d2886e5fbbf8e72ced87e1aeb664d06 Mon Sep 17 00:00:00 2001
From: Yi Sun <sunyi000@gmail.com>
Date: Mon, 12 May 2025 20:28:11 +0200
Subject: [PATCH 3/3] change to CPU version

---
 ilastik/1.4.1/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ilastik/1.4.1/Dockerfile b/ilastik/1.4.1/Dockerfile
index 0c68ec0d..3a69cb54 100644
--- a/ilastik/1.4.1/Dockerfile
+++ b/ilastik/1.4.1/Dockerfile
@@ -47,7 +47,7 @@ RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen && \
     locale-gen
 
 WORKDIR /opt/
-RUN wget https://files.ilastik.org/ilastik-1.4.1-gpu-Linux.tar.bz2 && \
+RUN wget https://files.ilastik.org/ilastik-1.4.1-Linux.tar.bz2 && \
     tar xjf ilastik-1.*-Linux.tar.bz2 && \
     rm -f ilastik-1.*-Linux.tar.bz2