From 15d76e3a74a9d4fefca4cb1062a855113efb0d35 Mon Sep 17 00:00:00 2001
From: Andrew Gaines <andrew.gaines@watchmakergenomics.com>
Date: Thu, 21 Aug 2025 12:24:17 -0600
Subject: [PATCH 1/3] Support rastair v0.8.2

---
 rastair/0.8.2/Dockerfile | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)
 create mode 100644 rastair/0.8.2/Dockerfile

diff --git a/rastair/0.8.2/Dockerfile b/rastair/0.8.2/Dockerfile
new file mode 100644
index 00000000..5ba7ff75
--- /dev/null
+++ b/rastair/0.8.2/Dockerfile
@@ -0,0 +1,32 @@
+FROM rust:1.78-buster AS builder
+
+# RUN cargo new --bin /app/rastair
+WORKDIR /app 
+RUN git clone --branch v0.8.2 https://bitbucket.org/bsblabludwig/rastair.git
+WORKDIR /app/rastair
+RUN cargo build --release
+
+FROM r-base:4.3.2 AS release
+# Copy the compiled binary from the build stage
+COPY --from=builder /app/rastair/target/release/rastair /usr/local/bin/rastair
+
+# Install system dependencies
+RUN apt update
+RUN apt-get -y upgrade
+
+# Install `ps` command for process monitoring
+RUN apt-get -y install procps
+
+# Install BiocManager for Bioconductor package management
+RUN Rscript -e "install.packages('BiocManager', repos='https://cloud.r-project.org')"
+
+# Install required R and Bioconductor packages
+RUN Rscript -e "BiocManager::install('Rsamtools', version = '3.18', ask = FALSE)" \
+    -e "if (!requireNamespace('remotes', quietly = TRUE)) install.packages('remotes', repos = 'https://cloud.r-project.org')" \
+    -e "remotes::install_version('ggplot2', version = '3.5.1', repos = 'https://cloud.r-project.org')" \
+    -e "remotes::install_version('gtable', version = '0.3.6', repos = 'https://cloud.r-project.org')"
+
+WORKDIR /app
+
+# Copy R scripts
+COPY --from=builder /app/rastair/scripts /app/scripts

From 2ba8ca6550795cbe0d38ffe7b6672aeb470d4b55 Mon Sep 17 00:00:00 2001
From: Andrew Gaines <andrew.gaines@watchmakergenomics.com>
Date: Thu, 21 Aug 2025 12:52:38 -0600
Subject: [PATCH 2/3] Labels

---
 rastair/0.8.2/Dockerfile | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/rastair/0.8.2/Dockerfile b/rastair/0.8.2/Dockerfile
index 5ba7ff75..2cb20504 100644
--- a/rastair/0.8.2/Dockerfile
+++ b/rastair/0.8.2/Dockerfile
@@ -7,6 +7,18 @@ WORKDIR /app/rastair
 RUN cargo build --release
 
 FROM r-base:4.3.2 AS release
+
+LABEL base_image="rust:1.78-buster, r-base:4.3.2" \
+      version="1"   \
+      software="rastair" \
+      software.version="v0.8.2" \
+      about.summary="Fast processing of TAPS-based sequencing data" \
+      about.home="https://bitbucket.org/bsblabludwig/rastair/src/v0.8.2/" \
+      about.documentation="https://bitbucket.org/bsblabludwig/rastair/src/v0.8.2/" \
+      about.license="SPDX:GPL-3" \
+      about.tags="Methylation, TAPS" \
+      maintainer="Andrew Gaines andrew.gaines@watchmakergenomics.com"
+
 # Copy the compiled binary from the build stage
 COPY --from=builder /app/rastair/target/release/rastair /usr/local/bin/rastair
 

From c1bfb8d50d6bb74a559e74bf0984622164664ce3 Mon Sep 17 00:00:00 2001
From: Andrew Gaines <andrew.gaines@watchmakergenomics.com>
Date: Fri, 22 Aug 2025 09:47:01 -0600
Subject: [PATCH 3/3] Match directory name to version name

---
 rastair/{0.8.2 => v0.8.2}/Dockerfile | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename rastair/{0.8.2 => v0.8.2}/Dockerfile (100%)

diff --git a/rastair/0.8.2/Dockerfile b/rastair/v0.8.2/Dockerfile
similarity index 100%
rename from rastair/0.8.2/Dockerfile
rename to rastair/v0.8.2/Dockerfile