Move to 2021 series + obfuscation trial

Author: phgrosjean

CODE_OF_CONDUCT.md

@@ -0,0 +1,128 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our
+community a harassment-free experience for everyone, regardless of age, body
+size, visible or invisible disability, ethnicity, sex characteristics, gender
+identity and expression, level of experience, education, socio-economic status,
+nationality, personal appearance, race, religion, or sexual identity and
+orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming,
+diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our
+community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes,
+and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the overall
+community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or
+advances of any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email
+address, without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards
+of acceptable behavior and will take appropriate and fair corrective action in
+response to any behavior that they deem inappropriate, threatening, offensive,
+or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, and will communicate reasons for moderation
+decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies
+when an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail
+address, posting via an official social media account, or acting as an appointed
+representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported to the community leaders responsible for enforcement at [INSERT CONTACT
+METHOD]. All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the
+reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining
+the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed
+unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing
+clarity around the nature of the violation and an explanation of why the
+behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series of
+actions.
+
+**Consequence**: A warning with consequences for continued behavior. No
+interaction with the people involved, including unsolicited interaction with
+those enforcing the Code of Conduct, for a specified period of time. This
+includes avoiding interactions in community spaces as well as external channels
+like social media. Violating these terms may lead to a temporary or permanent
+ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including
+sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public
+communication with the community for a specified period of time. No public or
+private interaction with the people involved, including unsolicited interaction
+with those enforcing the Code of Conduct, is allowed during this period.
+Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community
+standards, including sustained inappropriate behavior, harassment of an
+individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within the
+community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 2.0,
+available at https://www.contributor-covenant.org/version/2/0/
+code_of_conduct.html.
+
+Community Impact Guidelines were inspired by [Mozilla's code of conduct
+enforcement ladder](https://github.com/mozilla/diversity).
+
+[homepage]: https://www.contributor-covenant.org
+
+For answers to common questions about this code of conduct, see the FAQ at
+https://www.contributor-covenant.org/faq. Translations are available at https://
+www.contributor-covenant.org/translations.

CONDUCT.md

@@ -1,21 +1,21 @@
 Package: BioDataScience1
-Version: 2020.11.1
+Version: 2021.0.9000
 Title: A Series of Learnr Documents for Biological Data Science 1
-Description: Interactive documents using learnr for studying biological data science.
+Description: Interactive documents using learnr and shiny applications for studying biological data science.
 Authors@R: c(
   person("Philippe", "Grosjean", role = c("aut", "cre"),
   email = "phgrosjean@sciviews.org"),
   person("Guyliann", "Engels", role = "aut",
   email = "guyliann.engels@umons.ac.be"))
 Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
 Depends: R (>= 3.5.0)
-Imports: learndown, BioDataScience, shiny, miniUI
-Suggests: SciViews, ggplot2, ggpubr, data.io, flow, chart, covr, knitr, testthat, gradethis
+Imports: learnitdown, BioDataScience, shiny, miniUI
+Suggests: SciViews, ggplot2, ggpubr, data.io, flow, chart, covr, knitr, rmarkdown, testthat, gradethis
+Remotes: BioDataScience-Course/BioDataScience, rstudio/gradethis, SciViews/learnitdown, SciViews/data.io, SciViews/flow, SciViews/chart, SciViews/SciViews
 License: MIT + file LICENSE
-Encoding: UTF-8
-LazyData: true
 URL: https://github.com/BioDataScience-Course/BioDataScience1
 BugReports: https://github.com/BioDataScience-Course/BioDataScience1/issues
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1
 VignetteBuilder: knitr
+Encoding: UTF-8

DESCRIPTION

@@ -9,9 +9,9 @@ export(update_pkg)
 importFrom(BioDataScience,config)
 importFrom(BioDataScience,sign_in)
 importFrom(BioDataScience,sign_out)
-importFrom(learndown,learndownLearnrBanner)
-importFrom(learndown,learndownLearnrServer)
-importFrom(learndown,run)
+importFrom(learnitdown,learnitdownLearnrBanner)
+importFrom(learnitdown,learnitdownLearnrServer)
+importFrom(learnitdown,run)
 importFrom(miniUI,gadgetTitleBar)
 importFrom(miniUI,miniContentPanel)
 importFrom(miniUI,miniPage)