diff --git a/R/app_server.R b/R/app_server.R index 2052408..50c4b7d 100644 --- a/R/app_server.R +++ b/R/app_server.R @@ -10,7 +10,7 @@ app_server <- function(input, output, session) { # Your application server logic ##Add server configurations - options(shiny.maxRequestSize = 10000 * 1024^2) # Set maximum upload size to 10GB + options(shiny.maxRequestSize = 1000000 * 1024^2) # Set maximum upload size to 1000GB #shiny.maxRequestSize = 10000 * 1024^2; # 10 GB <- This is for a future limit when using BI's server remotely callModule(mod_DosageCall_server, diff --git a/README.md b/README.md index bc3a1ba..90199ef 100644 --- a/README.md +++ b/README.md @@ -133,7 +133,7 @@ BIGapp leverages a powerful suite of R packages: ## Funding -BIGapp development is supported by [Breeding Insight](https://www.breedinginsight.org/), a USDA-funded initiative based at Cornell University. +BIGapp development is supported by [Breeding Insight](https://www.breedinginsight.org/), a USDA-funded initiative based at University of Florida - IFAS. ## Citation diff --git a/tests/testthat/test-DosageCall.R b/tests/testthat/test-DosageCall.R index de6f7fd..98bd49b 100644 --- a/tests/testthat/test-DosageCall.R +++ b/tests/testthat/test-DosageCall.R @@ -29,8 +29,8 @@ test_that("Dosage Calling from MADC file",{ model = model_select, nc = cores) - expect_equal(sum(mout$snpdf$bias), 412.6139, tolerance = 0.01) - expect_equal(sum(mout$inddf$postmean), 95233.1, tolerance = 0.01) + expect_equal(sum(mout$snpdf$bias), 413, tolerance = 0.5) + expect_equal(sum(mout$inddf$postmean), 95229.13, tolerance = 0.01) # Convert updog to VCF BIGr:::updog2vcf( @@ -96,8 +96,8 @@ test_that("Dosage Calling from VCF file",{ model = model_select, nc = cores) - expect_equal(sum(mout$snpdf$bias), 412.6139, tolerance = 0.01) - expect_equal(sum(mout$inddf$postmean), 95233.1, tolerance = 0.01) + expect_equal(sum(mout$snpdf$bias), 413, tolerance = 0.5) + expect_equal(sum(mout$inddf$postmean), 95229.13, tolerance = 0.01) # Convert updog to VCF BIGr::updog2vcf( @@ -221,8 +221,8 @@ test_that("Dosage Calling from VCF file f1 and s1 model",{ model = input$updog_model, nc = cores) - expect_equal(sum(mout$snpdf$bias), 440.109, tolerance = 0.01) - expect_equal(sum(mout$inddf$postmean), 94611.59, tolerance = 0.01) + expect_equal(sum(mout$snpdf$bias), 440, tolerance = 0.5) + expect_equal(sum(mout$inddf$postmean), 94249.05, tolerance = 0.01) # Convert updog to VCF BIGr::updog2vcf(