Add undo migration scripts for the dummy test data

Author: jloux-brapi

src/main/resources/db/sql/undo_dummy_data/U10_pedigree.sql

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+DELETE FROM pedigree_edge where this_node_id IN ('pedigree1', 'pedigree2', 'pedigree3');
+DELETE FROM pedigree_node where id in ('pedigree1', 'pedigree2', 'pedigree3');

src/main/resources/db/sql/undo_dummy_data/U11_crosses.sql

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+UPDATE cross_entity SET planned_cross_id = null WHERE id = 'cross3';
+DELETE FROM cross_entity_external_references where cross_entity_id = 'cross4';
+DELETE FROM external_reference where id = 'cross_er_4';
+DELETE FROM cross_parent where cross_id = 'cross4';
+DELETE FROM cross_pollination_event where cross_id = 'cross4';
+DELETE FROM cross_entity where id = 'cross4';
+
+UPDATE seed_lot_content_mixture SET cross_id = null where id = 'seed_lot_content_mixture3';
+DELETE FROM cross_entity_external_references where cross_entity_id = 'cross3';
+DELETE FROM external_reference where id = 'cross_er_3';
+DELETE FROM cross_parent where cross_id = 'cross3';
+DELETE FROM cross_pollination_event where cross_id = 'cross3';
+DELETE FROM cross_entity_cross_attributes where cross_entity_id = 'cross3';
+DELETE FROM cross_entity where id = 'cross3';
+
+DELETE FROM crossing_project_external_references where crossing_project_entity_id = 'crossing_project2';
+DELETE FROM external_reference where id = 'crossing_project_er_2';
+DELETE FROM crossing_project where id = 'crossing_project2';
+
+UPDATE observation_unit SET cross_id = null where id = 'observation_unit3';
+UPDATE cross_entity SET planned_cross_id = null WHERE id = 'cross1';
+DELETE FROM cross_entity_external_references where cross_entity_id = 'cross2';
+DELETE FROM external_reference where id = 'cross_er_2';
+DELETE FROM cross_parent where cross_id = 'cross2';
+DELETE FROM cross_pollination_event where cross_id = 'cross2';
+DELETE FROM cross_entity where id = 'cross2';
+
+UPDATE observation_unit SET cross_id = null where id IN ('observation_unit2', 'observation_unit1');
+UPDATE seed_lot_content_mixture SET cross_id = null where id in ('seed_lot_content_mixture1', 'seed_lot_content_mixture2');
+DELETE FROM cross_entity_external_references where cross_entity_id = 'cross1';
+DELETE FROM external_reference where id = 'cross_er_1';
+DELETE FROM cross_parent where cross_id = 'cross1';
+DELETE FROM cross_pollination_event where cross_id = 'cross1';
+DELETE FROM cross_entity_cross_attributes where cross_entity_id = 'cross1';
+DELETE FROM cross_entity where id = 'cross1';
+
+DELETE FROM crossing_project_external_references where crossing_project_entity_id = 'crossing_project1';
+DELETE FROM external_reference where id = 'crossing_project_er_1';
+DELETE FROM crossing_project where id = 'crossing_project1';
+
+-- crossing project 1
+INSERT INTO crossing_project (auth_user_id, id, description, "name", program_id) VALUES('anonymousUser', 'crossing_project1', 'This is a crossing project', 'Crossing Project', 'program1');
+INSERT INTO external_reference(id, external_reference_id, external_reference_source) VALUES ('crossing_project_er_1', 'https://brapi.org/specification', 'BrAPI Doc');
+INSERT INTO crossing_project_external_references(crossing_project_entity_id, external_references_id) VALUES ('crossing_project1', 'crossing_project_er_1');
+
+INSERT INTO cross_entity (auth_user_id, id, cross_type, "name", planned, crossing_project_id) VALUES('anonymousUser', 'cross1', 0, 'germ1 X germ2', false, 'crossing_project1');
+INSERT INTO cross_entity_cross_attributes (cross_entity_id, cross_attributes) VALUES('cross1', 'maleFloweringDate:2020-04-01');
+insert into cross_pollination_event (id, pollination_number, pollination_successful, pollination_time_stamp, cross_id) values ('cross_pollination_event1', 'PN123', true, '2020-04-08', 'cross1');
+INSERT INTO cross_parent (id, parent_type, cross_id, crossing_project_id, germplasm_id, observation_unit_id) VALUES('cross_parent1', 0, 'cross1', 'crossing_project1', 'germplasm1', 'observation_unit1');
+INSERT INTO cross_parent (id, parent_type, cross_id, crossing_project_id, germplasm_id, observation_unit_id) VALUES('cross_parent2', 1, 'cross1', 'crossing_project1', 'germplasm2', 'observation_unit2');
+INSERT INTO external_reference(id, external_reference_id, external_reference_source) VALUES ('cross_er_1', 'https://brapi.org/specification', 'BrAPI Doc');
+INSERT INTO cross_entity_external_references(cross_entity_id, external_references_id) VALUES ('cross1', 'cross_er_1');
+UPDATE seed_lot_content_mixture SET cross_id = 'cross1' where id = 'seed_lot_content_mixture1';
+UPDATE seed_lot_content_mixture SET cross_id = 'cross1' where id = 'seed_lot_content_mixture2';
+UPDATE observation_unit SET cross_id = 'cross1' where id = 'observation_unit1';
+UPDATE observation_unit SET cross_id = 'cross1' where id = 'observation_unit2';
+
+INSERT INTO cross_entity (auth_user_id, id, cross_type, "name", planned, crossing_project_id, status) VALUES('anonymousUser', 'cross2', 0, 'germ2 X germ3', true, 'crossing_project1', 1);
+insert into cross_pollination_event (id, pollination_number, pollination_successful, pollination_time_stamp, cross_id) values ('cross_pollination_event2', 'PN234', true, '2020-05-09', 'cross2');
+insert into cross_pollination_event (id, pollination_number, pollination_successful, pollination_time_stamp, cross_id) values ('cross_pollination_event4', 'PN456', false, '2020-04-09', 'cross2');
+INSERT INTO cross_parent (id, parent_type, cross_id, crossing_project_id, germplasm_id, observation_unit_id) VALUES('cross_parent3', 0, 'cross2', 'crossing_project1', 'germplasm3', 'observation_unit3');
+INSERT INTO cross_parent (id, parent_type, cross_id, crossing_project_id, germplasm_id, observation_unit_id) VALUES('cross_parent4', 1, 'cross2', 'crossing_project1', 'germplasm2', 'observation_unit2');
+INSERT INTO external_reference(id, external_reference_id, external_reference_source) VALUES ('cross_er_2', 'https://brapi.org/specification', 'BrAPI Doc');
+INSERT INTO cross_entity_external_references(cross_entity_id, external_references_id) VALUES ('cross2', 'cross_er_2');
+UPDATE cross_entity SET planned_cross_id = 'cross2' WHERE id = 'cross1';
+UPDATE observation_unit SET cross_id = 'cross2' where id = 'observation_unit3';
+
+
+-- crossing project 2
+INSERT INTO crossing_project (auth_user_id, id, description, "name", program_id) VALUES('anonymousUser', 'crossing_project2', 'This is a crossing project', 'Crossing Project', 'program2');
+INSERT INTO external_reference(id, external_reference_id, external_reference_source) VALUES ('crossing_project_er_2', 'https://brapi.org/specification', 'BrAPI Doc');
+INSERT INTO crossing_project_external_references(crossing_project_entity_id, external_references_id) VALUES ('crossing_project2', 'crossing_project_er_2');
+
+INSERT INTO cross_entity (auth_user_id, id, cross_type, "name", planned, crossing_project_id) VALUES('anonymousUser', 'cross3', 0, 'germ1 X germ2', false, 'crossing_project2');
+INSERT INTO cross_entity_cross_attributes (cross_entity_id, cross_attributes) VALUES('cross3', 'maleFloweringDate:2020-04-03');
+insert into cross_pollination_event (id, pollination_number, pollination_successful, pollination_time_stamp, cross_id) values ('cross_pollination_event3', 'PN345', true, '2020-04-08', 'cross3');
+INSERT INTO cross_parent (id, parent_type, cross_id, crossing_project_id, germplasm_id, observation_unit_id) VALUES('cross_parent5', 0, 'cross3', 'crossing_project2', 'germplasm1', 'observation_unit1');
+INSERT INTO cross_parent (id, parent_type, cross_id, crossing_project_id, germplasm_id, observation_unit_id) VALUES('cross_parent6', 1, 'cross3', 'crossing_project2', 'germplasm2', 'observation_unit2');
+INSERT INTO external_reference(id, external_reference_id, external_reference_source) VALUES ('cross_er_3', 'https://brapi.org/specification', 'BrAPI Doc');
+INSERT INTO cross_entity_external_references(cross_entity_id, external_references_id) VALUES ('cross3', 'cross_er_3');
+UPDATE seed_lot_content_mixture SET cross_id = 'cross3' where id = 'seed_lot_content_mixture3';
+
+INSERT INTO cross_entity (auth_user_id, id, cross_type, "name", planned, crossing_project_id, status) VALUES('anonymousUser', 'cross4', 0, 'germ2 X germ3', true, 'crossing_project2', 0);
+insert into cross_pollination_event (id, pollination_number, pollination_successful, pollination_time_stamp, cross_id) values ('cross_pollination_event5', 'PN567', true, '2020-05-09', 'cross4');
+insert into cross_pollination_event (id, pollination_number, pollination_successful, pollination_time_stamp, cross_id) values ('cross_pollination_event6', 'PN678', false, '2020-04-09', 'cross4');
+INSERT INTO cross_parent (id, parent_type, cross_id, crossing_project_id, germplasm_id, observation_unit_id) VALUES('cross_parent7', 0, 'cross4', 'crossing_project2', 'germplasm3', 'observation_unit3');
+INSERT INTO cross_parent (id, parent_type, cross_id, crossing_project_id, germplasm_id, observation_unit_id) VALUES('cross_parent8', 1, 'cross4', 'crossing_project2', 'germplasm2', 'observation_unit2');
+INSERT INTO external_reference(id, external_reference_id, external_reference_source) VALUES ('cross_er_4', 'https://brapi.org/specification', 'BrAPI Doc');
+INSERT INTO cross_entity_external_references(cross_entity_id, external_references_id) VALUES ('cross4', 'cross_er_4');
+UPDATE cross_entity SET planned_cross_id = 'cross4' WHERE id = 'cross3';
+

src/main/resources/db/sql/undo_dummy_data/U12_observation_units.sql

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+DELETE FROM observation_unit_external_references where observation_unit_entity_id = 'observation_unit3';
+DELETE FROM external_reference where id = 'observation_unit_er_3';
+DELETE FROM observation_unit_level where position_id = 'observation_unit_position3';
+DELETE FROM observation_unit_position where id = 'observation_unit_position3';
+DELETE FROM coordinate where id = 'observation_unit_coor_3';
+DELETE FROM geojson where id = 'observation_unit_geo_3';
+DELETE FROM observation_unit_treatment where observation_unit_id = 'observation_unit3';
+DELETE FROM observation_unit where id = 'observation_unit3';
+
+DELETE FROM observation_unit_external_references where observation_unit_entity_id = 'observation_unit2';
+DELETE FROM external_reference where id = 'observation_unit_er_2';
+DELETE FROM observation_unit_level where position_id = 'observation_unit_position2';
+DELETE FROM observation_unit_position where id = 'observation_unit_position2';
+DELETE FROM coordinate where id = 'observation_unit_coor_2';
+DELETE FROM geojson where id = 'observation_unit_geo_2';
+DELETE FROM observation_unit_treatment where observation_unit_id = 'observation_unit2';
+DELETE FROM observation_unit where id = 'observation_unit2';
+
+DELETE FROM observation_unit_external_references where observation_unit_entity_id = 'observation_unit1';
+DELETE FROM external_reference where id = 'observation_unit_er_1';
+DELETE FROM observation_unit_level where position_id = 'observation_unit_position1';
+DELETE FROM observation_unit_position where id = 'observation_unit_position1';
+DELETE FROM coordinate where id = 'observation_unit_coor_1';
+DELETE FROM geojson where id = 'observation_unit_geo_1';
+DELETE FROM observation_unit_treatment where observation_unit_id = 'observation_unit1';
+DELETE FROM observation_unit where id = 'observation_unit1';

src/main/resources/db/sql/undo_dummy_data/U13_seed_lots.sql

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+DELETE FROM seed_lot_transaction_external_references where seed_lot_transaction_entity_id = 'seed_lot_transaction2';
+DELETE FROM external_reference where id = 'seed_lot_transaction_er_2';
+DELETE FROM seed_lot_transaction where id = 'seed_lot_transaction2';
+
+DELETE FROM seed_lot_transaction_external_references where seed_lot_transaction_entity_id = 'seed_lot_transaction1';
+DELETE FROM external_reference where id = 'seed_lot_transaction_er_1';
+DELETE FROM seed_lot_transaction where id = 'seed_lot_transaction1';
+
+DELETE FROM seed_lot_external_references where seed_lot_entity_id = 'seed_lot2';
+DELETE FROM external_reference where id = 'seed_lot_er_2';
+DELETE FROM seed_lot_content_mixture where seed_lot_id = 'seed_lot2';
+DELETE FROM seed_lot where id = 'seed_lot2';
+
+DELETE FROM seed_lot_external_references where seed_lot_entity_id = 'seed_lot1';
+DELETE FROM external_reference where id = 'seed_lot_er_1';
+DELETE FROM seed_lot_content_mixture where seed_lot_id = 'seed_lot1';
+DELETE FROM seed_lot where id = 'seed_lot1';

src/main/resources/db/sql/undo_dummy_data/U14_attribute_values.sql

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+DELETE FROM germplasm_attribute_value_external_references where germplasm_attribute_value_entity_id = 'attribute_val3';
+DELETE FROM external_reference where id = 'attribute_val_er_3';
+DELETE FROM germplasm_attribute_value where id = 'attribute_val3';
+
+DELETE FROM germplasm_attribute_value_external_references where germplasm_attribute_value_entity_id = 'attribute_val2';
+DELETE FROM external_reference where id = 'attribute_val_er_2';
+DELETE FROM germplasm_attribute_value where id = 'attribute_val2';
+
+DELETE FROM germplasm_attribute_value_external_references where germplasm_attribute_value_entity_id = 'attribute_val1';
+DELETE FROM external_reference where id = 'attribute_val_er_1';
+DELETE FROM germplasm_attribute_value where id = 'attribute_val1';

src/main/resources/db/sql/undo_dummy_data/U15_attribute_defs.sql

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+DELETE FROM variable_base_entity_external_references WHERE variable_base_entity_id = 'attribute2';
+DELETE FROM external_reference where id = 'attribute_er_2';
+DELETE FROM variable_base_entity_synonyms where variable_base_entity_id = 'attribute2';
+DELETE FROM variable_base_entity_context_of_use where variable_base_entity_id = 'attribute2';
+DELETE FROM germplasm_attribute_definition where id = 'attribute2';
+DELETE FROM trait where id = 'trait_attribute2';
+DELETE FROM method where id = 'method_attribute2';
+DELETE FROM scale where id = 'scale_attribute2';
+
+DELETE FROM variable_base_entity_external_references WHERE variable_base_entity_id = 'attribute1';
+DELETE FROM external_reference where id = 'attribute_er_1';
+DELETE FROM variable_base_entity_synonyms where variable_base_entity_id = 'attribute1';
+DELETE FROM variable_base_entity_context_of_use where variable_base_entity_id = 'attribute1';
+DELETE FROM germplasm_attribute_definition where id = 'attribute1';
+DELETE FROM trait where id = 'trait_attribute1';
+DELETE FROM method where id = 'method_attribute1';
+DELETE FROM scale where id = 'scale_attribute1';
+
+DELETE FROM ontology where id = 'ontology_attribute1';
+

src/main/resources/db/sql/undo_dummy_data/U16_germplasm.sql

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+DELETE FROM germplasm_external_references where germplasm_entity_id = 'germplasm3';
+DELETE FROM external_reference where id = 'germplasm_er_3';
+DELETE FROM germplasm_taxon where germplasm_id = 'germplasm3';
+DELETE FROM germplasm_synonym where germplasm_id = 'germplasm3';
+DELETE FROM germplasm_entity_type_of_germplasm_storage_code where germplasm_entity_id = 'germplasm3';
+DELETE FROM germplasm_institute where germplasm_id = 'germplasm3';
+DELETE FROM germplasm_origin where germplasm_id = 'germplasm3';
+DELETE FROM coordinate where id = 'germplasm_origin_coor_3';
+DELETE FROM geojson where id = 'germplasm_origin_geo_3';
+DELETE FROM germplasm_donor where germplasm_id = 'germplasm3';
+DELETE FROM germplasm where id = 'germplasm3';
+
+DELETE FROM germplasm_external_references where germplasm_entity_id = 'germplasm2';
+DELETE FROM external_reference where id = 'germplasm_er_2';
+DELETE FROM germplasm_taxon where germplasm_id = 'germplasm2';
+DELETE FROM germplasm_synonym where germplasm_id = 'germplasm2';
+DELETE FROM germplasm_entity_type_of_germplasm_storage_code where germplasm_entity_id = 'germplasm2';
+DELETE FROM germplasm_institute where germplasm_id = 'germplasm2';
+DELETE FROM germplasm_origin where germplasm_id = 'germplasm2';
+DELETE FROM coordinate where id = 'germplasm_origin_coor_2';
+DELETE FROM geojson where id = 'germplasm_origin_geo_2';
+DELETE FROM germplasm_donor where germplasm_id = 'germplasm2';
+DELETE FROM germplasm where id = 'germplasm2';
+
+DELETE FROM germplasm_external_references where germplasm_entity_id = 'germplasm1';
+DELETE FROM external_reference where id = 'germplasm_er_1';
+DELETE FROM germplasm_taxon where germplasm_id = 'germplasm1';
+DELETE FROM germplasm_synonym where germplasm_id = 'germplasm1';
+DELETE FROM germplasm_entity_type_of_germplasm_storage_code where germplasm_entity_id = 'germplasm1';
+DELETE FROM germplasm_institute where germplasm_id = 'germplasm1';
+DELETE FROM germplasm_origin where germplasm_id = 'germplasm1';
+DELETE FROM coordinate where id = 'germplasm_origin_coor_1';
+DELETE FROM geojson where id = 'germplasm_origin_geo_1';
+DELETE FROM germplasm_donor where germplasm_id = 'germplasm1';
+DELETE FROM germplasm where id = 'germplasm1';

src/main/resources/db/sql/undo_dummy_data/U17_breeding_methods.sql

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+DELETE FROM breeding_method where id IN ('breeding_method1', 'breeding_method2');