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Commit 4447807

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[BI-2040] removed all calls to fetchXXXXX(page) and the methods themsleves
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src/main/java/org/brapi/test/BrAPITestServer/service/pheno/ObservationVariableService.java

Lines changed: 1 addition & 76 deletions
Original file line numberDiff line numberDiff line change
@@ -143,13 +143,7 @@ public List<ObservationVariable> findObservationVariables(ObservationVariableSea
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log.debug("Starting variable search");
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Page<ObservationVariableEntity> page = observationVariableRepository.findAllBySearch(searchQuery, pageReq);
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log.debug("Variable search complete");
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if(!page.isEmpty()) {
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observationVariableRepository.fetchXrefs(page, ObservationVariableEntity.class);
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fetchSynonyms(page);
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fetchMethodXrefs(page);
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fetchScaleXrefs(page);
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fetchTraitXrefs(page);
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}
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log.debug("converting "+page.getSize()+" entities");
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List<ObservationVariable> observationVariables = page.map(this::convertFromEntity).getContent();
@@ -158,75 +152,6 @@ public List<ObservationVariable> findObservationVariables(ObservationVariableSea
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return observationVariables;
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}
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public void fetchSynonyms(Page<ObservationVariableEntity> page) {
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SearchQueryBuilder<ObservationVariableEntity> searchQuery = new SearchQueryBuilder<>(ObservationVariableEntity.class);
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searchQuery.leftJoinFetch("synonyms", "synonyms")
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.appendList(page.stream().map(BrAPIBaseEntity::getId).collect(Collectors.toList()), "id");
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Page<ObservationVariableEntity> synonyms = observationVariableRepository.findAllBySearch(searchQuery, PageRequest.of(0, page.getSize()));
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Map<String, List<String>> synonymsByVar = new HashMap<>();
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synonyms.forEach(entity -> synonymsByVar.put(entity.getId(), entity.getSynonyms()));
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page.forEach(entity -> entity.setSynonyms(synonymsByVar.get(entity.getMethod().getId())));
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}
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public void fetchMethodXrefs(Page<ObservationVariableEntity> page) {
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SearchQueryBuilder<MethodEntity> searchQuery = new SearchQueryBuilder<>(MethodEntity.class);
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searchQuery.leftJoinFetch("externalReferences", "externalReferences")
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.join("variables", "variables")
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.appendList(page.stream().map(BrAPIBaseEntity::getId).collect(Collectors.toList()), "*variables.id");
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Page<MethodEntity> xrefs = methodRepository.findAllBySearch(searchQuery, PageRequest.of(0, page.getSize()));
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Map<String, List<ExternalReferenceEntity>> xrefByEntity = new HashMap<>();
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xrefs.forEach(entity -> xrefByEntity.put(entity.getId(), entity.getExternalReferences()));
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page.forEach(entity -> entity.getMethod().setExternalReferences(xrefByEntity.get(entity.getMethod().getId())));
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}
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public void fetchScaleXrefs(Page<ObservationVariableEntity> page) {
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SearchQueryBuilder<ScaleEntity> searchQuery = new SearchQueryBuilder<>(ScaleEntity.class);
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searchQuery.leftJoinFetch("externalReferences", "externalReferences")
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.join("variables", "variables")
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.appendList(page.stream().map(BrAPIBaseEntity::getId).collect(Collectors.toList()), "*variables.id");
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Page<ScaleEntity> xrefs = scaleRepository.findAllBySearch(searchQuery, PageRequest.of(0, page.getSize()));
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Map<String, List<ExternalReferenceEntity>> xrefByEntity = new HashMap<>();
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xrefs.forEach(entity -> xrefByEntity.put(entity.getId(), entity.getExternalReferences()));
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page.forEach(entity -> entity.getScale().setExternalReferences(xrefByEntity.get(entity.getMethod().getId())));
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}
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public void fetchScaleValidValueCategories(Page<ObservationVariableEntity> page) {
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SearchQueryBuilder<ScaleEntity> searchQuery = new SearchQueryBuilder<>(ScaleEntity.class);
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searchQuery.leftJoinFetch("validValueCategories", "validValueCategories")
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.join("variables", "variables")
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.appendList(page.stream().map(BrAPIBaseEntity::getId).collect(Collectors.toList()), "*variables.id");
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Page<ScaleEntity> validValueCategories = scaleRepository.findAllBySearch(searchQuery, PageRequest.of(0, page.getSize()));
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Map<String, List<ScaleValidValueCategoryEntity>> infoByEntity = new HashMap<>();
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validValueCategories.forEach(entity -> infoByEntity.put(entity.getId(), entity.getValidValueCategories()));
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page.forEach(entity -> entity.getScale().setValidValueCategories(infoByEntity.get(entity.getId())));
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}
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public void fetchTraitXrefs(Page<ObservationVariableEntity> page) {
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SearchQueryBuilder<TraitEntity> searchQuery = new SearchQueryBuilder<>(TraitEntity.class);
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searchQuery.leftJoinFetch("externalReferences", "externalReferences")
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.join("variables", "variables")
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.appendList(page.stream().map(BrAPIBaseEntity::getId).collect(Collectors.toList()), "*variables.id");
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Page<TraitEntity> xrefs = traitRepository.findAllBySearch(searchQuery, PageRequest.of(0, page.getSize()));
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Map<String, List<ExternalReferenceEntity>> xrefByEntity = new HashMap<>();
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xrefs.forEach(entity -> xrefByEntity.put(entity.getId(), entity.getExternalReferences()));
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page.forEach(entity -> entity.getTrait().setExternalReferences(xrefByEntity.get(entity.getMethod().getId())));
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}
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public List<ObservationVariable> saveObservationVariables(@Valid List<ObservationVariableNewRequest> body)
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throws BrAPIServerException {
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List<ObservationVariable> savedObservationVariables = new ArrayList<>();

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