[BI-1771] - added germplasm-related indexes

Author: mlm483

src/main/resources/application.properties.template

@@ -9,7 +9,7 @@ spring.datasource.driver-class-name=org.postgresql.Driver
 
 spring.jpa.hibernate.ddl-auto=create-drop
 spring.jpa.show-sql=false
-spring.jpa.properties.hibernate.hbm2ddl.import_files=sql/crops.sql, sql/lists.sql, sql/locations.sql, sql/people.sql, sql/programs.sql, sql/trials.sql, sql/seasons.sql, sql/studies.sql, sql/breeding_methods.sql, sql/germplasm.sql, sql/attribute_defs.sql, sql/attribute_values.sql, sql/seed_lots.sql, sql/observation_units.sql, sql/crosses.sql, sql/pedigree.sql, sql/events.sql, sql/images.sql, sql/observation_variables.sql, sql/observations.sql, sql/samples.sql, sql/allele_calls.sql, sql/genome_maps.sql, sql/references.sql, sql/vendor.sql    
+spring.jpa.properties.hibernate.hbm2ddl.import_files=sql/crops.sql, sql/lists.sql, sql/locations.sql, sql/people.sql, sql/programs.sql, sql/trials.sql, sql/seasons.sql, sql/studies.sql, sql/breeding_methods.sql, sql/germplasm.sql, sql/attribute_defs.sql, sql/attribute_values.sql, sql/seed_lots.sql, sql/observation_units.sql, sql/crosses.sql, sql/pedigree.sql, sql/events.sql, sql/images.sql, sql/observation_variables.sql, sql/observations.sql, sql/samples.sql, sql/allele_calls.sql, sql/genome_maps.sql, sql/references.sql, sql/vendor.sql, sql/create_indexes.sql
 
 spring.mvc.dispatch-options-request=true
 

src/main/resources/sql/create_indexes.sql

@@ -0,0 +1,13 @@
+-- Indexes to improve read performance of Germplasm operations.
+CREATE INDEX CONCURRENTLY "pedigree_edge_this_node_id" ON pedigree_edge (this_node_id);
+CREATE INDEX CONCURRENTLY "pedigree_edge_connected_node_id" ON pedigree_edge (connceted_node_id);
+CREATE INDEX CONCURRENTLY "pedigree_edge_edge_type" ON pedigree_edge (edge_type);
+CREATE INDEX CONCURRENTLY "program_external_references_program_entity_id" ON program_external_references (program_entity_id);
+CREATE INDEX CONCURRENTLY "external_reference_composite" ON external_reference (external_reference_source, external_reference_id);
+CREATE INDEX CONCURRENTLY "program_additional_info_composite" ON program_additional_info (additional_info_id, program_entity_id);
+CREATE INDEX CONCURRENTLY "list_list_name" ON list (list_name);
+CREATE INDEX CONCURRENTLY "pedigree_node_germplasm_id" ON pedigree_node (germplasm_id);
+CREATE INDEX CONCURRENTLY "germplasm_additional_info_germplasm_entity_id" ON germplasm_additional_info (germplasm_entity_id);
+CREATE INDEX CONCURRENTLY "germplasm_external_references_germplasm_entity_id" ON germplasm_external_references (germplasm_entity_id);
+CREATE INDEX CONCURRENTLY "germplasm_synonym_germplasm_id" ON germplasm_synonym (germplasm_id);
+CREATE INDEX CONCURRENTLY "germplasm_taxon_germplasm_id" ON germplasm_taxon (germplasm_id);