1- ## Aimed at:
2- Anyone interested in using Python for Biomodelling. The material in
3- this workshop will help you get the most out of the other workshops
1+ ## Aimed at:
2+ Anyone interested in using Python for Biomodelling. The material in
3+ this workshop will help you get the most out of the other workshops
44run during the week.
55
6- ## Requirements:
6+ ## Requirements:
77Basic knowledge of Python e.g. as in [ https://chryswoods.com/beginning_python ] ( https://chryswoods.com/beginning_python )
88
9- ## Abstract:
10- This workshop will introduce more intermediate features of Python that
11- are useful for biomolecular modellers. This will include the use of
12- Jupyter notebooks, how to write Python functions and classes, and
9+ ## Abstract:
10+ This workshop will introduce more intermediate features of Python that
11+ are useful for biomolecular modellers. This will include the use of
12+ Jupyter notebooks, how to write Python functions and classes, and
1313how to properly structure, document and test code. The second
14- part will introduce you to data analysis tools such as Pandas,
14+ part will introduce you to data analysis tools such as Pandas,
1515NumPy and MatplotLib.
1616
1717## Training Material
1818
1919The workshop consists of a series of Jupyter notebooks. These are available
2020below, and can be run using the
21- <a href =" https://ccpbiosim.github.io/workshop/events/leeds2019/server.html " target =" _blank " >workshop Jupyter server</a >.
21+ <a href =" https://notebook.biosimspace.org " target =" _blank " >workshop Jupyter server</a >.
2222
2323Once you have started the server, navigate to the ` python_and_data ` directory
2424and you will find all workshop material there.
@@ -28,7 +28,7 @@ The workshops are numbered sequentially from `01_jupyter_howto.ipynb` to
2828and are * mostly* independent. Feel free to go through them in the order you
2929prefer, and to skip topics that you feel you are already comfortable with.
3030
31- There are exercises in many of the topics. You can find answers in the
31+ There are exercises in many of the topics. You can find answers in the
3232equivalent notebook in the ` answers ` directory.
3333
3434Below is a summary of each topic, together with links to view html versions
@@ -131,7 +131,7 @@ Learn how to use the pandas with the MatPlotLib library to draw graphs
131131
132132### [ 16_viewing_molecules.ipynb] ( html/16_viewing_molecules.html ) ([ answers] ( html/answers/16_viewing_molecules.html ) )
133133
134- Learn how to use the nglview and BioSimSpace libraries to create 3D
134+ Learn how to use the nglview and BioSimSpace libraries to create 3D
135135views of molecules.
136136
137137[ download] ( 16_viewing_molecules.ipynb ) | [ download answers] ( answers/16_viewing_molecules.ipynb )
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