Merge pull request #5 from CCPBioSim/fixes

Fixes for deployment tests

Author: jimboid

02_lists.ipynb

@@ -75,7 +75,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "a[3]"

03_dictionaries.ipynb

@@ -61,7 +61,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "a['fish']"

04_functions.ipynb

@@ -168,7 +168,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "list5 = multiply(list1)"

08_class_documentation.ipynb

@@ -255,7 +255,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "p.setHeight(\"cat\")"

09_exceptions.ipynb

@@ -88,7 +88,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "setHeight(-5)"
@@ -129,7 +133,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "setHeight(400)"
@@ -170,7 +178,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "setHeight(-10)"

10_error_handling.ipynb

@@ -33,7 +33,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "setHeight(\"cat\")"
@@ -72,7 +76,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "setHeight(\"cat\")"
@@ -105,7 +113,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "setHeight(\"cat\")"
@@ -123,7 +135,11 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "tags": [
+      "raises-exception"
+    ]
+   },
    "outputs": [],
    "source": [
     "setHeight(\"1.8 m\")"

15_matplotlib.ipynb

@@ -73,7 +73,7 @@
     "df = pd.read_csv(\n",
     "    'data/cetml1659on.dat',  # file name\n",
     "    skiprows=6,  # skip header\n",
-    "    sep='\\s+',  # whitespace separated\n",
+    "    sep=r'\\s+',  # whitespace separated\n",
     "    na_values=['-99.9', '-99.99'],  # NaNs\n",
     ")\n",
     "df.head()"
@@ -522,7 +522,7 @@
    "outputs": [],
    "source": [
     "by_decade = df.groupby('decade')\n",
-    "agg = by_decade.aggregate(np.mean)\n",
+    "agg = by_decade.aggregate('mean')\n",
     "\n",
     "agg.head()"
    ]