missing colon in auxiliary data

[charliechen912ilovbash]

Hi,

I am trying to use samtools to compress lra output .sam into .bam with
samtools view -Shb sample.sam >sample.bam
and it shows:
[samopen] SAM header is present: 2780 sequences. Parse error at line 2782: missing colon in auxiliary data Aborted (core dumped)

The 2782 line is the start of the alignment record, I check with nl sample.sam|less

  2780  @SQ     SN:HPV-mSD2     LN:7300
  2781  @SQ     SN:NC_001401.2_AAV2     LN:4679
  2782  12dd169b-b354-41a7-a025-74020cd2faed    0       chr11   28171215        60      57S57=1I4=1D34=1X1I1=1I1=1I1=1D1=1X26=1D15=1D8=1D1=1I1=1X3=1D7=5I7=1I1=1D2=1X1I2=1D7=1I3=1D6=1D8=2D3=1D4=1D4=1D2=1D7=1D1=1D12=1D31=1I3=1X1I8=1X2=1X2=2I28=1D2=1I32=2I26=2D13=1X1=1D8=1X2=1I10=1X1=1D1=1X4=1X12=1I12=1I7=3D39=1D19=1X8=1I8=1X1D1=2X3=2X1D15=1I1=2X1=7D6=1X1D3=1X1D1=1D8=1D3=1X25=1X1=2I2=2X1D29=2D10=1I1=1I6=1I6=2X1=1I1=1X1=3D1=1I1=2I2=1X2D2=1I1=2
........

[mchaisso]

Hi Charlie, can you try on the latest main? If that doesn't work, can you supply this read and a reference to NC_001401 genome?

[mchaisso]

Hi Charlie, I'll close this out if I don't hear back.