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- image_path: /software/ctyperlogo.png
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title: "ctyper"
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excerpt: |
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Ctyper is a genotyping approach for pangenomes to detect alleles that are shared between a biobank (short-read sequencing) sample and a long-read pangenome for challenging and copy-number variable regions of the genome.
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Ctyper is a genotyping approach for pangenomes to detect alleles that are shared between a biobank (short-read sequencing) sample and a long-read pangenome for challenging and copy-number variable regions of the genome.
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"bioconda:" ctyper
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"git:" {{ https://github.com/chaissonlab/ctyper }}
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"git:" https://github.com/chaissonlab/ctyper
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"publication:" {{ https://www.nature.com/articles/s41588-025-02346-4 }}
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"author:" [Walfred Ma]({% link Walfred_ma.md %})
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