Update software.md

Author: mchaisso

_pages/software.md

@@ -10,16 +10,26 @@ seg_vamos:
     title: "vamos"
     excerpt: |
       STR and VNTR annotation by motif composition for PacBio and Oxford Nanopore reads, and assemblies. The vamos suite contains two components, one to characterize the repeat motifs in a population using an `efficient` motif set, a subset of motifs that preserves motif sequence diversity while removing rare motifs, and annotation software that uses wraparound dynamic programming to annotate samples using tandem repeat and motif databases.
-      https://github.com/chaissonlab/vamos
+      bioconda: vamos  
+      git: https://github.com/chaissonlab/vamos
+      publication:  
+      authors: Jingwen Ren and [Bida Gu] ({%Bida_Gu.md%})  
+seg_ctyper:
+  - image_path: /software/ctyperlogo.png
+    title: "vamos"
+    excerpt: |
+      Ctyper is a genotyping approach for pangenomes to detect alleles that are shared between a biobank (short-read sequencing) sample and a long-read pangenome for challenging and copy-number variable regions of the genome.
+      bioconda: ctyper  
+      https://github.com/chaissonlab/ctyper
 
 seg_lra:
   - image_path: /software/lra.png
     title: "LRA"
     excerpt: |
-      Software for mapping long reads (PacBio/Oxford Nanopore) or their assemblies to genomes. LRA implements an exact convex gap penalty for biologically meaningful gaps to discover structural variation.
-      https://github.com/chaissonlab/lra
+      Software for mapping long reads (PacBio/Oxford Nanopore) or their assemblies to genomes. LRA implements an exact convex gap penalty for biologically meaningful gaps to discover structural variation.  
+      git https://github.com/chaissonlab/lra
 
 ---
+{% include feature_row id="seg_ctyper" type="left" %}
 {% include feature_row id="seg_vamos" type="left" %}
-
 {% include feature_row id="seg_lra" type="left" %}