Trying to fix links

Author: mchaisso

_pages/software.md

@@ -21,27 +21,27 @@ seg_ctyper:
     excerpt: |
       Ctyper is a genotyping approach for pangenomes to detect alleles that are shared between a biobank (short-read sequencing) sample and a long-read pangenome for challenging and copy-number variable regions of the genome.
       "bioconda:" ctyper  
-      "git:" https://github.com/chaissonlab/ctyper  
-      "publication:" https://www.nature.com/articles/s41588-025-02346-4
+      "git:" {{ https://github.com/chaissonlab/ctyper }}  
+      "publication:" {{ https://www.nature.com/articles/s41588-025-02346-4 }}  
       "author:" [Walfred Ma]({% link Walfred_ma.md %})
     
 seg_lra:
   - image_path: /software/lra.png
     title: "LRA"
     excerpt: |
       test {% Software for mapping long reads (PacBio/Oxford Nanopore) or their assemblies to genomes. LRA implements an exact convex gap penalty for biologically meaningful gaps to discover structural variation.  %}
-      "git:" https://github.com/chaissonlab/lra  
+      "git:" {{ https://github.com/chaissonlab/lra }}  
       "bioconda:" lra  
-      "publication:" https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009078
+      "publication:" {{ https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009078 }}  
       "author:" Jingwen Ren
     
 seg_danbing-tk:
    - image_path: /software/danging-tk.png
      title: danbing-tk
      excerpt: |
        A method to map short-read sequences into locus-specific pangenome graphs implemented as de Bruijn graphs to estimate tandem repeat variation by length and composition.  
-     "git:" https://github.com/chaissonlab/danbing-tk
-     "publications:" https://genome.cshlp.org/content/33/4/511.short, https://www.nature.com/articles/s41467-021-24378-0
+     "git:" {{ https://github.com/chaissonlab/danbing-tk}}  
+     "publications:" {{ https://genome.cshlp.org/content/33/4/511.short }}, {{ https://www.nature.com/articles/s41467-021-24378-0 }}  
      "author:" [Tony Tsung-Yu Lu]({% link tsungyu_lu.md %})
 
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