update test

Author: KerstenBreuer

CWL/workflows/CUTnRUN.cwl

@@ -128,6 +128,7 @@ inputs:
       Q-value cutoff used for peak calling by MACS2. 
       The default is 0.05.
     type: float
+    default: 0.05
   broad_peaks:
     doc: |
       Determines whether the "--broad" flag
@@ -400,4 +401,4 @@ outputs:
     outputSource: create_summary_qc_report/multiqc_zip
   multiqc_html:
     type: File
-    outputSource: create_summary_qc_report/multiqc_html
+    outputSource: create_summary_qc_report/multiqc_html

tiny_test/test_main.chip.yml

@@ -16,12 +16,6 @@ genome:
 genome_spike_in:
   class: File
   path: ./ref_genome.fa
-adapter1: 
-  - "AGT"
-  - "AGT"
-adapter2: 
-  - null
-  - null
 is_paired_end: true
 fragment_size: null
 effective_genome_size: 199