From 4d33c8d41041a9422b6106a7b269a2b38b2d8e84 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 10:52:37 -0600
Subject: [PATCH 01/12] refactor: GH-158 proper theme, mkdocs-tacc (#240)
* docs: upgrade user/dev instructions
* conf: upgrade
* refactor: move docs to root
* docs: explain the dir with empty `__init__.py`
To allow PIP and Python to use the same reference for dependencies:
1. For PIP, make package an app (have `our_project_name/__init__.py`).
2. For Poetry, to be explicit, add `package-mode = true`.
This has been done on other clients and template client repo.
* deps: mkdocs-tacc v1
* conf: deploy this branch to pprd
* fix: outdated paths
* fix: describe user guide, not mkdocs-tacc-client
* fix: outdated paths CONT.
* refactor: move docs again, part 1 (config)
* refactor: move docs again, part 2 (move)
* refactor: move docs again, part 3 (old image text)
* refactor: move docs again, part 4 (no ds-docs)
---
.github/CODEOWNERS | 28 +-
.github/workflows/build-pprd.yml | 2 +-
.gitignore | 17 +-
CONTRIBUTING.md | 38 +-
DEVELOPING.md | 15 +-
Dockerfile | 63 ++-
Makefile | 3 -
README.md | 6 +-
TESTING.md | 86 +--
bin/tacc-setup.sh | 23 -
docker-compose.yml | 17 +-
ds_user_guide/README.md | 3 +
.../__init__.py | 0
user-guide/mkdocs.yml => mkdocs.yml | 58 ++-
poetry.lock | 493 ++++++++++++++++++
pyproject.toml | 29 ++
user-guide/REORG.md | 61 ---
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rename user-guide/{docs => }/usecases/arduino/usecase_quoFEM.md (100%)
rename user-guide/{docs => }/usecases/arduino/usecase_siteResponse.md (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/img/BlueHorse_Grelin_1080.jpg (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/img/noaa_api.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/img/us_census_api.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/img/usgs_recent_earthquakes.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/img/usgs_shakemap_api.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/license.md (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/noaa_api.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/output_11_1.png (100%)
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rename user-guide/{docs => }/usecases/brandenberg-api/us_census_api.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/usecase.md (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/usgs_recent_earthquakes.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-api/usgs_shakemap_api.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-ngl/img/Counts1.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-ngl/img/SiteTableQuery.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-ngl/img/Tables.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-ngl/img/WildlifeQuery1.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-ngl/img/WildlifeQuery2.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-ngl/img/borh_fields.png (100%)
rename user-guide/{docs => }/usecases/brandenberg-ngl/usecase.md (100%)
rename user-guide/{docs => }/usecases/brandenberg-sqlite/usecase.md (100%)
rename user-guide/{docs => }/usecases/dataanalyticsusecases.md (100%)
rename user-guide/{docs => }/usecases/dawson/img/TapisImage.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/collaborator.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/curation.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/f61_xarray.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/logs_full.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/logs_job.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/merbok.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/noaa_api.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/project.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/project_dir.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/project_dir_2.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/pylauncher_app.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/si_mesh.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/si_runtimes.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/si_tides_ts.png (100%)
rename user-guide/{docs => }/usecases/dawson/img/si_ts.png (100%)
rename user-guide/{docs => }/usecases/dawson/usecase.md (100%)
rename user-guide/{docs => }/usecases/dawson/usecase2.md (100%)
rename user-guide/{docs => }/usecases/docs/images/00-fork.png (100%)
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rename user-guide/{docs => }/usecases/docs/images/03-pi-usecase-folder.png (100%)
rename user-guide/{docs => }/usecases/docs/images/04-edit-usecasemd.png (100%)
rename user-guide/{docs => }/usecases/docs/images/05-edit-usecase.png (100%)
rename user-guide/{docs => }/usecases/docs/images/06-commit-usecase-edits.png (100%)
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rename user-guide/{docs => }/usecases/docs/images/10-add-img-md.png (100%)
rename user-guide/{docs => }/usecases/docs/images/11-preview-img.png (100%)
rename user-guide/{docs => }/usecases/docs/images/12-image-commit.png (100%)
rename user-guide/{docs => }/usecases/docs/images/13-open-pr.png (100%)
rename user-guide/{docs => }/usecases/docs/images/14-pr-changes.png (100%)
rename user-guide/{docs => }/usecases/docs/images/16-fetch-upstream.png (100%)
rename user-guide/{docs => }/usecases/docs/images/17-fetch-merge.png (100%)
rename user-guide/{docs => }/usecases/docs/images/18-open-pr.png (100%)
rename user-guide/{docs => }/usecases/docs/images/18-verify-diff.png (100%)
rename user-guide/{docs => }/usecases/docs/images/19-create-pr.png (100%)
rename user-guide/{docs => }/usecases/docs/images/20-pr-file-changes.png (100%)
rename user-guide/{docs => }/usecases/docs/images/21-pr.png (100%)
rename user-guide/{docs => }/usecases/docs/images/22-preview.png (100%)
rename user-guide/{docs => }/usecases/docs/images/collaborator.png (100%)
rename user-guide/{docs => }/usecases/geohazardusecases.md (100%)
rename user-guide/{docs => }/usecases/haan/img3/DS_apps_QGIS.jpg (100%)
rename user-guide/{docs => }/usecases/haan/img3/image001.png (100%)
rename user-guide/{docs => }/usecases/haan/img3/image002.png (100%)
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rename user-guide/{docs => }/usecases/haan/usecase-2.md (100%)
rename user-guide/{docs => }/usecases/haan/usecase-3.md (100%)
rename user-guide/{docs => }/usecases/haan/usecase.md (100%)
rename user-guide/{docs => }/usecases/index.md (100%)
rename user-guide/{docs => }/usecases/kareem/img/fig1.png (100%)
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rename user-guide/{docs => }/usecases/kareem/img/fig4.png (100%)
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rename user-guide/{docs => }/usecases/kareem/img2/Picture1.png (100%)
rename user-guide/{docs => }/usecases/kareem/img2/Picture10.png (100%)
rename user-guide/{docs => }/usecases/kareem/img2/Picture11.png (100%)
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rename user-guide/{docs => }/usecases/kareem/img2/Picture15.png (100%)
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rename user-guide/{docs => }/usecases/kareem/img2/Picture3.png (100%)
rename user-guide/{docs => }/usecases/kareem/img2/Picture4.png (100%)
rename user-guide/{docs => }/usecases/kareem/img2/Picture5.png (100%)
rename user-guide/{docs => }/usecases/kareem/img2/Picture6.png (100%)
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rename user-guide/{docs => }/usecases/kareem/img2/Picture8.png (100%)
rename user-guide/{docs => }/usecases/kareem/img2/Picture9.png (100%)
rename user-guide/{docs => }/usecases/kareem/usecase.md (100%)
rename user-guide/{docs => }/usecases/kareem/usecase2.md (100%)
rename user-guide/{docs => }/usecases/kareem/usecase3.md (100%)
rename user-guide/{docs => }/usecases/kumar/img/mpm-algorithm.png (100%)
rename user-guide/{docs => }/usecases/kumar/img/mpm-ds.png (100%)
rename user-guide/{docs => }/usecases/kumar/img/oso-mpm-viz.png (100%)
rename user-guide/{docs => }/usecases/kumar/img/paraview-viz.png (100%)
rename user-guide/{docs => }/usecases/kumar/usecase.md (100%)
rename user-guide/{docs => }/usecases/lowes/img/ShellEle.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/img/cracked.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/img/crushing.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/img/cs1.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/img/cs2.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/img/disp.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/img/movies.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/img/rupture.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/img/stresstrain.JPG (100%)
rename user-guide/{docs => }/usecases/lowes/usecase.md (100%)
rename user-guide/{docs => }/usecases/mosqueda/erler-mosqueda.md (100%)
rename user-guide/{docs => }/usecases/mosqueda/img/Fig.1.png (100%)
rename user-guide/{docs => }/usecases/mosqueda/img/Fig.2.png (100%)
rename user-guide/{docs => }/usecases/mosqueda/img/Fig.3.png (100%)
rename user-guide/{docs => }/usecases/mosqueda/img/Fig.4.png (100%)
rename user-guide/{docs => }/usecases/mosqueda/img/MCEER-13-0003.jpg (100%)
rename user-guide/{docs => }/usecases/mosqueda/usecase.md (100%)
rename user-guide/{docs => }/usecases/overview.md (100%)
rename user-guide/{docs => }/usecases/overview/img/data.png (100%)
rename user-guide/{docs => }/usecases/overview/img/geo.png (100%)
rename user-guide/{docs => }/usecases/overview/img/seismic.jpg (100%)
rename user-guide/{docs => }/usecases/overview/img/wind.png (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig1.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig10.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig11.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig12.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig13.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig14.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig15.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig16.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig1_Updated.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig2.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig2_Updated.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig3.png (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig3_Updated.png (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig3_Updated2.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig3_Updated3.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig4.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig5.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig6.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig6_Updated.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig7.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Fig8.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/FigMap.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Figure1_viz.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Figure2_viz.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Figure3_viz.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Figure4_viz.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/Figure4a_viz.jpg (100%)
rename user-guide/{docs => }/usecases/padgett/img/recovery_trajectory_viz.gif (100%)
rename user-guide/{docs => }/usecases/padgett/usecase.md (100%)
rename user-guide/{docs => }/usecases/padgett/usecase_JN_viz.md (100%)
rename user-guide/{docs => }/usecases/pinelli/2usecase.md (100%)
rename user-guide/{docs => }/usecases/pinelli/3usecase.md (100%)
rename user-guide/{docs => }/usecases/pinelli/img/Picture10.gif (100%)
rename user-guide/{docs => }/usecases/pinelli/img/Picture2.png (100%)
rename user-guide/{docs => }/usecases/pinelli/img/Picture4.png (100%)
rename user-guide/{docs => }/usecases/pinelli/img/Picture5.png (100%)
rename user-guide/{docs => }/usecases/pinelli/img/Picture7.png (100%)
rename user-guide/{docs => }/usecases/pinelli/img/Picture8.png (100%)
rename user-guide/{docs => }/usecases/pinelli/img/Picture9.gif (100%)
rename user-guide/{docs => }/usecases/pinelli/img/Workflow.png (100%)
rename user-guide/{docs => }/usecases/pinelli/img/example-interactive-web-map-with-folium.png (100%)
rename user-guide/{docs => }/usecases/pinelli/img/jupyter-user-roles.png (100%)
rename user-guide/{docs => }/usecases/pinelli/img/jupyter.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/fig5a.jpg (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/fig5b.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/fig6.jpg (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image001.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image002.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image003.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image004.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image005.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image006.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image007.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image008.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image009.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image010.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image011.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image012.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image013.png (100%)
rename user-guide/{docs => }/usecases/pinelli/newimgs/image014.png (100%)
rename user-guide/{docs => }/usecases/pinelli/usecase.md (100%)
rename user-guide/{docs => }/usecases/rathje/img/DS_OPENSEES_STKO.png (100%)
rename user-guide/{docs => }/usecases/rathje/img/EPWP.png (100%)
rename user-guide/{docs => }/usecases/rathje/img/Foundation.png (100%)
rename user-guide/{docs => }/usecases/rathje/img/Post_OPENSEES_STKO.png (100%)
rename user-guide/{docs => }/usecases/rathje/img/Sa.png (100%)
rename user-guide/{docs => }/usecases/rathje/img/SchematicView.png (100%)
rename user-guide/{docs => }/usecases/rathje/img/TOOLS.png (100%)
rename user-guide/{docs => }/usecases/rathje/img/VM_STKO.png (100%)
rename user-guide/{docs => }/usecases/rathje/usecase.md (100%)
rename user-guide/{docs => }/usecases/seismicusecases.md (100%)
rename user-guide/{docs => }/usecases/usgs_api/usecase.md (100%)
rename user-guide/{docs => }/usecases/vantassel_and_zhang/img/0_linear_regression.png (100%)
rename user-guide/{docs => }/usecases/vantassel_and_zhang/img/1_random_forest.png (100%)
rename user-guide/{docs => }/usecases/vantassel_and_zhang/img/2_artificial_neural_network.png (100%)
rename user-guide/{docs => }/usecases/vantassel_and_zhang/img/2_convolutional_neural_networks.png (100%)
rename user-guide/{docs => }/usecases/vantassel_and_zhang/usecase.md (100%)
rename user-guide/{docs => }/usecases/windstormsurgeusecases.md (100%)
diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS
index 807d0d71..65a2d521 100644
--- a/.github/CODEOWNERS
+++ b/.github/CODEOWNERS
@@ -3,26 +3,24 @@
# architecture
/* @wesleyboar
/.github/ @wesleyboar
-/user-guide/themes @wesleyboar
# settings
-/user-guide/docs/index.md @wesleyboar
-/user-guide/mkdocs.yml @wesleyboar
+/user-guide/index.md @wesleyboar
+
+# assets
+*.js @wesleyboar
+js/ @wesleyboar
+*.css @wesleyboar
+css/ @wesleyboar
# OpenSees
-/user-guide/docs/tools/simulation/opensees.md @silviamazzoni
-/user-guide/docs/tools/simulation/opensees/ @silviamazzoni
-/user-guide/docs/tools/simulation/openseesOld/ @silviamazzoni
+/user-guide/tools/simulation/opensees.md @silviamazzoni
+/user-guide/tools/simulation/opensees/ @silviamazzoni
+/user-guide/tools/simulation/openseesOld/ @silviamazzoni
# ADCIRC
-# /user-guide/docs/tools/simulation/adcirc.md @cdelcastillo21
-# /user-guide/docs/tools/simulation/adcirc/ @cdelcastillo21
+# /user-guide/tools/simulation/adcirc.md @cdelcastillo21
+# /user-guide/tools/simulation/adcirc/ @cdelcastillo21
# Arduino
-# /user-guide/docs/usecases/arduino/ @parduino
-
-# static assets
-*.js @wesleyboar
-js/ @wesleyboar
-*.css @wesleyboar
-css/ @wesleyboar
+# /user-guide/usecases/arduino/ @parduino
diff --git a/.github/workflows/build-pprd.yml b/.github/workflows/build-pprd.yml
index bec3b3f2..0ac246a1 100644
--- a/.github/workflows/build-pprd.yml
+++ b/.github/workflows/build-pprd.yml
@@ -5,7 +5,7 @@ on:
branches:
- pprd
- any/branch-you-want
- - test/deeper-navigation
+ - refactor/gh-158-proper-theme
jobs:
docker:
diff --git a/.gitignore b/.gitignore
index 7aafca1e..dda9fa43 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,19 +1,12 @@
-# Ignore site
-user-guide/site/
+# build
+site/
-# TACC files
-mkdocs.base.yml
-poetry.lock
-pyproject.toml
-user-guide/docs/**/core
-user-guide/themes/tacc-readthedocs
-
-# Temporary files
+# os
.DS_Store
-# Igonre pyenv
+# python
.python-version
-# Ignore user configs
+# ide
.vs
.vscode
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index dc461dab..cc3ac6e8 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -4,26 +4,31 @@ We are glad you are reading this. We welcome your contribution.
Here are some important resources:
-* [Known Issues](https://github.com/TACC/TACC-Docs/issues)
-* [Active Proposals](https://github.com/TACC/TACC-Docs/pulls)
-* [How to Test](./TESTING.md)
-* [How to Organize](./ORGANIZING.md)
+* [Known Issues][issues]
+* [Active Proposals][proposals]
+* [How to Test][test]
-## Step by Step
+## Contribute via Command Line
-[How to Contribute to **Use Cases**.](https://github.com/DesignSafe-CI/DS-User-Guide/blob/main/user-guide/docs/usecases/README.md)
+Follow [TACC's MkDocs "Testing: Test Locally" instructions](https://tacc.github.io/mkdocs-tacc/test/#test-locally).
+
+## Contribute via GitHub
+
+### Step by Step
+
+[How to Contribute to **Use Cases**.](https://github.com/DesignSafe-CI/DS-User-Guide/blob/main/user-guide/usecases/README.md)
How to Contribute **Other Changes**:
-1. [Fork](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/working-with-forks/fork-a-repo) this repository.\
- (unless you are a direct collaborator)
-2. [Edit](https://docs.github.com/en/repositories/working-with-files/managing-files/editing-files) relevant files that need update.\
+1. [Fork][fork] this repository.\
+ (**unless** you are a direct collaborator)
+2. [Edit][edit] relevant files that need update.\
([upload images](https://docs.github.com/en/repositories/working-with-files/managing-files/adding-a-file-to-a-repository) as necessary)
-4. [Commit](https://docs.github.com/en/pull-requests/committing-changes-to-your-project/creating-and-editing-commits/about-commits) your changes.\
+3. [Commit][commit] your changes.\
(write [clear commit messages](#writing-commit-messages))
-5. [Test](./TESTING.md) your changes.\
+4. [Test][test] your changes.\
(if comfortable using a command prompt)
-6. [Request](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request) a review.\
+5. [Request][request] a review.\
(a.k.a. create a "Pull Request")
## Writing Commit Messages
@@ -51,3 +56,12 @@ Start reading our newer docs and you'll get the hang of it. We optimize for read
Thanks,\
Texas Advanced Computing Center
+
+[issues]: https://github.com/DesignSafe-CI/ds-user-guide/issues
+[proposals]: https://github.com/DesignSafe-CI/ds-user-guide/pulls
+[test]: ./TESTING.md
+
+[fork]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/working-with-forks/fork-a-repo
+[edit]: https://docs.github.com/en/repositories/working-with-files/managing-files/editing-files
+[commit]: https://docs.github.com/en/pull-requests/committing-changes-to-your-project/creating-and-editing-commits/about-commits
+[request]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request
diff --git a/DEVELOPING.md b/DEVELOPING.md
index 8ec4e571..d95f10ae 100644
--- a/DEVELOPING.md
+++ b/DEVELOPING.md
@@ -1,12 +1,15 @@
# How to Develop
-Manage dependencies via [TACC/TACC-Docs](https://github.com/TACC/TACC-Docs). Serve docs via [MkDocs](https://www.mkdocs.org/). Test via [Docker](https://www.docker.com/). Deploys are [automated](./PUBLISHING.md).
+Manage dependencies via [Poetry v2](https://python-poetry.org/). Serve docs via [MkDocs](https://www.mkdocs.org/). [Test manually.](#testing) Deploys are [automated](./PUBLISHING.md).
-## Theming
+## How to Edit the Theme
-Customize MkDocs with [CSS, JS, ES, plugins, extensions](https://github.com/TACC/TACC-Docs/blob/v0.15.0/mkdocs.base.yml) and [theme overrides](https://github.com/TACC/TACC-Docs/tree/v0.15.0/themes/tacc-readthedocs) **from [TACC/TACC-Docs](https://github.com/TACC/TACC-Docs)** both via [script](./bin/tacc-setup.sh) and [via Docker](./Dockerfile).
+To change the TACC documentation theme, [contribute to `mkdocs-tacc`](https://github.com/TACC/mkdocs-tacc/blob/main/CONTRIBUTING.md).
-To theme another MkDocs project to look [like this](https://docs.tacc.utexas.edu/), please contact [@wesleyboar](https://www.github.com/wesleyboar).
+To change just this project, learn how to [configure](https://tacc.github.io/mkdocs-tacc/configure) & [customize](https://tacc.github.io/mkdocs-tacc/customize).
-> [!NOTE]
-> We will eventually [use MkDocs Material](https://github.com/TACC/TACC-Docs/issues/53) and [apply TACC customization properly](https://github.com/TACC/TACC-Docs/issues/76).
+To make functional changes, [use extensions](https://tacc.github.io/mkdocs-tacc/extensions/).
+
+## How to Test Your Changes
+
+Read [How to Test](./TESTING.md).
diff --git a/Dockerfile b/Dockerfile
index cdc2a117..5c27e7ea 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,15 +1,48 @@
-FROM taccwma/tacc-docs:v0.15.1
-
-# To archive TACC content, before replacing it
-RUN mv /docs /docs-from-tacc
-COPY ./user-guide/ /docs/
-
-# To restore required TACC files
-RUN cp -r /docs-from-tacc/mkdocs.base.yml /docs/mkdocs.base.yml && \
- rm -rf /docs/docs/js/core && \
- cp -r /docs-from-tacc/docs/js/core /docs/docs/js/core && \
- rm -rf /docs/docs/css/core && \
- cp -r /docs-from-tacc/docs/css/core /docs/docs/css/core
-RUN mkdir -p /docs/themes/ && \
- rm -rf /docs/themes/tacc-readthedocs && \
- cp -r /docs-from-tacc/themes/tacc-readthedocs /docs/themes/tacc-readthedocs
+FROM python:3.11-bullseye as python-base
+
+LABEL maintainer="TACC COA CMD "
+
+ARG DEBIAN_FRONTEND=noninteractive
+
+# https://python-poetry.org/docs/configuration/#using-environment-variables
+ENV POETRY_VERSION=2.1.1 \
+ POETRY_HOME="/opt/poetry" \
+ POETRY_VIRTUALENVS_IN_PROJECT=true \
+ POETRY_NO_INTERACTION=1 \
+ PYSETUP_PATH="/opt/pysetup" \
+ VENV_PATH="/opt/pysetup/.venv"
+
+# prepend poetry and venv to path
+ENV PATH="$POETRY_HOME/bin:$VENV_PATH/bin:$PATH"
+
+FROM python-base as builder-base
+# install locales for en_us.utf-8
+RUN apt-get update && apt-get install -y \
+ dialog \
+ apt-utils \
+ locales \
+ && rm -rf /var/lib/apt/lists/* \
+ && localedef -i en_US -c -f UTF-8 -A /usr/share/locale/locale.alias en_US.UTF-8
+
+ENV LC_ALL en_US.utf-8
+ENV LANG en_US.utf-8
+
+RUN pip3 install --upgrade pip setuptools wheel
+
+# Install Poetry - respects $POETRY_VERSION & $POETRY_HOME
+RUN curl -sSL https://install.python-poetry.org | python3 -
+
+# copy project requirement files here to ensure they will be cached.
+WORKDIR $PYSETUP_PATH
+COPY pyproject.toml poetry.lock ./
+
+# install runtime deps - uses $POETRY_VIRTUALENVS_IN_PROJECT internally
+RUN poetry install --only main --no-root
+
+# `production` image is used for deployed runtime environments
+FROM python-base as production
+
+COPY --from=builder-base $PYSETUP_PATH $PYSETUP_PATH
+
+COPY . /docs
+WORKDIR /docs
diff --git a/Makefile b/Makefile
index 574b2ce1..a4ca235d 100644
--- a/Makefile
+++ b/Makefile
@@ -12,6 +12,3 @@ start:
.PHONY: stop
stop:
$(DOCKER_COMPOSE_CMD) -f docker-compose.yml down
- # So assets are not re-used (even after `docker system prune --all --force`)
- docker volume rm ds-user-guide_skip-tacc-js
- docker volume rm ds-user-guide_skip-tacc-css
diff --git a/README.md b/README.md
index e10e11b6..d70c2af1 100644
--- a/README.md
+++ b/README.md
@@ -6,11 +6,11 @@ DesignSafe-CI's user documentation at [designsafe-ci.org/user-guide](https://des
We welcome contributions, offer a guide for those new to GitHub, and a style guide to simplify reviews. [Read more](./CONTRIBUTING.md) or skip to:
-[How to Contribute to **Use Cases**.](user-guide/docs/usecases/README.md)
+[How to Contribute to **Use Cases**.](./user-guide/usecases/README.md)
## Testing
-Testing is manual and requires using a command prompt. You can test [via Python](./TESTING.md#a-via-python) or [via Docker](./TESTING.md#b-via-docker).
+You can test on our development server or locally via command line. [Read more](./TESTING.md).
## Publishing
@@ -18,4 +18,4 @@ We automatically publish `main` branch commits. We manually release versions of
## Developing
-We use [Poetry](https://python-poetry.org/), [Docker](https://www.docker.com/), [MkDocs](https://mkdocs.readthedocs.io/) and a customized theme. [Read more](./DEVELOPING.md).
\ No newline at end of file
+We use [PIP](https://pip.pypa.io/) or [Poetry](https://python-poetry.org/), and [MkDocs](https://mkdocs.readthedocs.io/) with a customized theme. We offer [Docker](https://www.docker.com/) (and a [Makefile](https://www.gnu.org/software/make/manual/make.html#Introduction)). [Read more.](./DEVELOPING.md)
diff --git a/TESTING.md b/TESTING.md
index 89698844..c1b39cd0 100644
--- a/TESTING.md
+++ b/TESTING.md
@@ -1,62 +1,24 @@
-## How to Test
-
-- [A. Via Python](#a-via-python)
-- [B. Via Docker](#b-via-docker)
-
-### A. Via Python
-
-#### Prerequisites
-
-- Have [Python](https://www.python.org/) installed.\
- Known supported versions are [from 3.10 to 3.12](https://github.com/TACC/TACC-Docs/blob/v0.10.1/pyproject.toml#L9).
-- Have [Poetry](https://python-poetry.org/docs/#installing-with-the-official-installer) installed to manage dependencies.\
- You should only need to do this once.\
- Future versions of DesignSafe User Guide will **not** require this.
-
-#### Steps
-
-0. Clone this repository onto your machine.
-1. Navigate into your clone of this repo.
-2. Run `bin/tacc-setup.sh` to reproduce config from TACC Docs.
-3. Install/Update project dependencies:\
- You should only need to do this after new releases.
- ```shell
- poetry install --sync
- ```
-4. Activate project dependencies:
- ```shell
- poetry shell
- ```
- After the `poetry shell` command, you should be in a Poetry-managed environment. Your prompt might be prefixed with the name of the environment.
-5. Serve the docs:
- ```shell
- mkdocs serve
- ```
-6. Open the website _at the URL echoed by the program_ e.g.
- [http://127.0.0.1:8000/](http://127.0.0.1:8000/).
-
-### B. Via Docker
-
-#### Prerequisites
-
-- Have [Docker](https://www.docker.com/) installed.\
- We recommend doing so via [Docker-Desktop](https://www.docker.com/products/docker-desktop).
-
-#### Steps
-
-0. Clone this repository onto your machine.
-1. Navigate into your clone of this repository.
-2. Start the Docker container to serve the docs.
-
- Using `Make`:
- ```shell
- make build
- make start
- ```
- Or:
- ```shell
- docker compose build
- docker compose up
- ```
-3. Open the website at the URL provided e.g.
- [http://localhost:8000/](http://localhost:8000/).
+# How to Test
+
+## Local Server
+
+> [!WARNING]
+> Testing is manual and requires using a command prompt.
+
+You can [test with **PIP** or **Poetry** or **Docker** or **Make**](https://tacc.github.io/mkdocs-tacc/test/#test-locally) as a client.
+
+## Remote Server
+
+> [!WARNING]
+> Your test may be overridden by others working on the same test server.
+
+Deploy to our test server:
+
+0. Have a branch with changes ready to deploy.
+1. On your branch, edit the [pre-prod workflow config](./.github/workflows/build-pprd.yml) `branches:` list.
+2. Commit the change to trigger the workflow.
+3. Wait for [GitHub action](https://github.com/DesignSafe-CI/ds-user-guide/actions) to complete.
+4. Load https://pprd.designsafe-ci.org/user-guide/.
+
+> [!TIP]
+> In the future, we will offer a dedicated test server. Task is pending [issue #61](https://github.com/DesignSafe-CI/DS-User-Guide/issues/61).
diff --git a/bin/tacc-setup.sh b/bin/tacc-setup.sh
deleted file mode 100755
index 283d2cd0..00000000
--- a/bin/tacc-setup.sh
+++ /dev/null
@@ -1,23 +0,0 @@
-#!/bin/bash
-
-# What version of TACC-Docs to use
-TACC_VER=v0.15.1
-# Where to get files from TACC
-BASE_URL="https://cdn.jsdelivr.net/gh/TACC/TACC-Docs@${TACC_VER}"
-# Get the directory where the script resides
-ROOT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )/.." && pwd )"
-# Create a temporary directory for the TACC docs
-TACC_DIR="${ROOT_DIR}/_temp-tacc-docs-for-ds"
-
-# So authors can preview with TACC features but without Docker
-curl -o "${ROOT_DIR}/user-guide/mkdocs.base.yml" ${BASE_URL}/mkdocs.base.yml
-curl -o "${ROOT_DIR}/user-guide/poetry.lock" ${BASE_URL}/poetry.lock
-curl -o "${ROOT_DIR}/user-guide/pyproject.toml" ${BASE_URL}/pyproject.toml
-
-# So authors can preview with TACC design but without Docker
-mkdir -p "${ROOT_DIR}/user-guide/themes/tacc-readthedocs"
-git clone -q --depth 1 --branch ${TACC_VER} https://github.com/TACC/TACC-Docs.git ${TACC_DIR}
-cp -r ${TACC_DIR}/themes/tacc-readthedocs "${ROOT_DIR}/user-guide/themes/"
-cp -r ${TACC_DIR}/docs/css/core "${ROOT_DIR}/user-guide/docs/css/"
-cp -r ${TACC_DIR}/docs/js/core "${ROOT_DIR}/user-guide/docs/js/"
-rm -rf ${TACC_DIR}
diff --git a/docker-compose.yml b/docker-compose.yml
index 3101ccff..c28d3082 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -1,20 +1,9 @@
-name: ds-user-guide
-
-version: "3"
services:
docs:
build: .
volumes:
- - ./user-guide/docs:/docs/docs
- - ./user-guide/mkdocs.yml:/docs/mkdocs.yml
- # To retain TACC assets added during build
- - skip-tacc-js:/docs/docs/js/core
- - skip-tacc-css:/docs/docs/css/core
+ - .:/docs
ports:
- 127.0.0.1:8000:8000
- command: mkdocs serve --dev-addr 0.0.0.0:8000 --watch-theme --config-file /docs/mkdocs.yml
- container_name: ds_docs
-
-volumes:
- skip-tacc-js:
- skip-tacc-css:
+ command: ["mkdocs", "serve", "--dev-addr", "0.0.0.0:8000", "--watch-theme", "--config-file", "/user-guide/mkdocs.yml"]
+ container_name: designsafe_user_guide
diff --git a/ds_user_guide/README.md b/ds_user_guide/README.md
new file mode 100644
index 00000000..b6fc9b1c
--- /dev/null
+++ b/ds_user_guide/README.md
@@ -0,0 +1,3 @@
+## Package Installation
+
+To allow PIP to use `[project.dependencies]`.
diff --git a/user-guide/docs/tools/jupyterhub/jupytersomething.md b/ds_user_guide/__init__.py
similarity index 100%
rename from user-guide/docs/tools/jupyterhub/jupytersomething.md
rename to ds_user_guide/__init__.py
diff --git a/user-guide/mkdocs.yml b/mkdocs.yml
similarity index 86%
rename from user-guide/mkdocs.yml
rename to mkdocs.yml
index 91ae7346..d013227a 100644
--- a/user-guide/mkdocs.yml
+++ b/mkdocs.yml
@@ -1,32 +1,51 @@
-INHERIT: ./mkdocs.base.yml
-
site_name: DesignSafe User Guide
site_description: DesignSafe User Guide
site_url: https://designsafe-ci.org/user-guide/
repo_url: https://github.com/DesignSafe-CI/DS-User-Guide
-edit_uri: edit/main/user-guide/docs/
+edit_uri: edit/main/user-guide/
# NOTE: Unrecognized by MkDocs, but recognized by ReadTheDocs theme
site_favicon: https://www.designsafe-ci.org/favicon.ico
theme:
- name: readthedocs
- logo: img/NSF_NHERI-DS.svg
- cms_url: https://designsafe-ci.org/ # TACC Feature
- cms_name: designsafe-ci.org # TACC Feature
- nav_name: User Guide # TACC Feature
- navigation_depth: 6
- analytics:
- gtag: G-D96RT1T24K
+ name: tacc_readthedocs
+ navigation_depth: 6
+ analytics:
+ gtag: G-D96RT1T24K
+ hljs_languages:
+ - python
+ - json
+ # "ReadTheDocs" Theme Features
+ logo: img/logo.svg
+ # "TACC" Theme Features
+ logo_svg_inject: true
+ portal_url: https://designsafe-ci.org/
+ portal_name: designsafe-ci.org
+ nav_name: User Guide
extra_css:
- # TACC/TACC-Docs:/mkdocs.base.yml
- - css/core/bootstrap.css
- - css/core/core-styles.css
- - css/core/tacc-docs.css
- - css/core/highlight-js.css
- - css/core/permalink.css
- # DesignSafe/DS-User-Guide
- - css/ds-docs.css
+ - css/ds-user-guide.css
+
+extra_javascript:
+ - js/ds-user-guide.js
+ - https://unpkg.com/mathjax@3/es5/tex-mml-chtml.js # for pymdownx.arithmatex
+
+markdown_extensions:
+ - extra
+ - admonition
+ - toc:
+ permalink: "" # i.e. `true` but without "¶"
+ permalink_class: headerlink fa fa-link
+ permalink_title: Link to Heading
+ # PyMdown Extensions
+ # - pymdownx.blocks.admonition # to use: disable `admonition`, convert `!!!`s
+ - pymdownx.blocks.details
+ - pymdownx.blocks.html
+ - pymdownx.blocks.tab
+ - pymdownx.superfences
+ - pymdownx.inlinehilite
+ - pymdownx.saneheaders
+ - pymdownx.arithmatex:
+ generic: true # for mathjax
plugins:
- search
@@ -151,4 +170,3 @@ nav:
- API Developer's Guide: https://tapis-cli.readthedocs.io/en/latest/
- Cybersecurity Policy: tools/advanced/cybersecurity.md
- HPC Allocations Policy: tools/advanced/hpcallocations.md
-
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 00000000..5a6f00cd
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,493 @@
+# This file is automatically @generated by Poetry 2.1.4 and should not be changed by hand.
+
+[[package]]
+name = "babel"
+version = "2.17.0"
+description = "Internationalization utilities"
+optional = false
+python-versions = ">=3.8"
+groups = ["main"]
+files = [
+ {file = "babel-2.17.0-py3-none-any.whl", hash = "sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2"},
+ {file = "babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d"},
+]
+
+[package.extras]
+dev = ["backports.zoneinfo ; python_version < \"3.9\"", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata ; sys_platform == \"win32\""]
+
+[[package]]
+name = "click"
+version = "8.3.1"
+description = "Composable command line interface toolkit"
+optional = false
+python-versions = ">=3.10"
+groups = ["main"]
+files = [
+ {file = "click-8.3.1-py3-none-any.whl", hash = "sha256:981153a64e25f12d547d3426c367a4857371575ee7ad18df2a6183ab0545b2a6"},
+ {file = "click-8.3.1.tar.gz", hash = "sha256:12ff4785d337a1bb490bb7e9c2b1ee5da3112e94a8622f26a6c77f5d2fc6842a"},
+]
+
+[package.dependencies]
+colorama = {version = "*", markers = "platform_system == \"Windows\""}
+
+[[package]]
+name = "colorama"
+version = "0.4.6"
+description = "Cross-platform colored terminal text."
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+groups = ["main"]
+markers = "platform_system == \"Windows\""
+files = [
+ {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
+ {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
+]
+
+[[package]]
+name = "ghp-import"
+version = "2.1.0"
+description = "Copy your docs directly to the gh-pages branch."
+optional = false
+python-versions = "*"
+groups = ["main"]
+files = [
+ {file = "ghp-import-2.1.0.tar.gz", hash = "sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343"},
+ {file = "ghp_import-2.1.0-py3-none-any.whl", hash = "sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619"},
+]
+
+[package.dependencies]
+python-dateutil = ">=2.8.1"
+
+[package.extras]
+dev = ["flake8", "markdown", "twine", "wheel"]
+
+[[package]]
+name = "jinja2"
+version = "3.1.6"
+description = "A very fast and expressive template engine."
+optional = false
+python-versions = ">=3.7"
+groups = ["main"]
+files = [
+ {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"},
+ {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"},
+]
+
+[package.dependencies]
+MarkupSafe = ">=2.0"
+
+[package.extras]
+i18n = ["Babel (>=2.7)"]
+
+[[package]]
+name = "markdown"
+version = "3.3.7"
+description = "Python implementation of Markdown."
+optional = false
+python-versions = ">=3.6"
+groups = ["main"]
+files = [
+ {file = "Markdown-3.3.7-py3-none-any.whl", hash = "sha256:f5da449a6e1c989a4cea2631aa8ee67caa5a2ef855d551c88f9e309f4634c621"},
+ {file = "Markdown-3.3.7.tar.gz", hash = "sha256:cbb516f16218e643d8e0a95b309f77eb118cb138d39a4f27851e6a63581db874"},
+]
+
+[package.extras]
+testing = ["coverage", "pyyaml"]
+
+[[package]]
+name = "markupsafe"
+version = "3.0.3"
+description = "Safely add untrusted strings to HTML/XML markup."
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+ {file = "markupsafe-3.0.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2f981d352f04553a7171b8e44369f2af4055f888dfb147d55e42d29e29e74559"},
+ {file = "markupsafe-3.0.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e1c1493fb6e50ab01d20a22826e57520f1284df32f2d8601fdd90b6304601419"},
+ {file = "markupsafe-3.0.3-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:1ba88449deb3de88bd40044603fafffb7bc2b055d626a330323a9ed736661695"},
+ {file = "markupsafe-3.0.3-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:f42d0984e947b8adf7dd6dde396e720934d12c506ce84eea8476409563607591"},
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+]
+
+[[package]]
+name = "pyyaml-env-tag"
+version = "1.1"
+description = "A custom YAML tag for referencing environment variables in YAML files."
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+ {file = "pyyaml_env_tag-1.1-py3-none-any.whl", hash = "sha256:17109e1a528561e32f026364712fee1264bc2ea6715120891174ed1b980d2e04"},
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+]
+
+[package.dependencies]
+pyyaml = "*"
+
+[[package]]
+name = "six"
+version = "1.17.0"
+description = "Python 2 and 3 compatibility utilities"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main"]
+files = [
+ {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"},
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+]
+
+[[package]]
+name = "watchdog"
+version = "6.0.0"
+description = "Filesystem events monitoring"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
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+ {file = "watchdog-6.0.0.tar.gz", hash = "sha256:9ddf7c82fda3ae8e24decda1338ede66e1c99883db93711d8fb941eaa2d8c282"},
+]
+
+[package.extras]
+watchmedo = ["PyYAML (>=3.10)"]
+
+[metadata]
+lock-version = "2.1"
+python-versions = ">=3.10,<3.13"
+content-hash = "f7f414d5fdd19c237a2767d5081676f11a05820d5d075f99aa8a27ccd79d3c6a"
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 00000000..6f9ec7c3
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,29 @@
+[build-system]
+requires = ["poetry-core>=1.5.0,<3.0.0"]
+build-backend = "poetry.core.masonry.api"
+
+[tool.poetry]
+package-mode = true # to make PIP use [project.dependencies]
+
+[project]
+name = "ds-user-guide"
+version = "0.1.0"
+description = "User Guide for DesignSafe"
+authors = [
+ { name = "TACC COA CMD", email = "coa-cmd@tacc.utexas.edu" }
+]
+maintainers = [
+ { name = "TACC COA CMD", email = "coa-cmd@tacc.utexas.edu" },
+ { name = "TACC ACI WMA", email = "wma-portals@tacc.utexas.edu" }
+]
+readme = "README.md"
+requires-python = ">=3.10,<3.13"
+dependencies = [
+ "mkdocs-tacc[all] (>=1.0.0,<2.0.0)",
+ "mkdocs-exclude-search (>=0.6.6,<0.7.0)",
+ "mkdocs-include-markdown-plugin (>=5.1.0,<6.0.0)",
+]
+
+[project.urls]
+homepage = "https://designsafe-ci.org/user-guide"
+github = "https://github.com/DesignSafe-CI/ds-user-guide"
diff --git a/user-guide/REORG.md b/user-guide/REORG.md
deleted file mode 100644
index ae3f60f9..00000000
--- a/user-guide/REORG.md
+++ /dev/null
@@ -1,61 +0,0 @@
-# DesignSafe User Guide Reorganization
-
-## 1. Changes to Do Now
-
-✅ [**Done.**](https://github.com/DesignSafe-CI/DS-User-Guide/commit/bc54a42d)
-
-### Rearrange
-
-- **Move** these items to the bottom of Data Depot section:
- - "Resources for Users"
- - "About the Data Depot"
- - "Policies"
-- **Move** "Recon Portal" to its own section just above "Use Cases".
-
-### Delete
-
-- **Delete** "Hybrid Simulation" from "Steps to Curate and Publish".
-
-## 2. Changes M. Esteva Should Review First
-
-✅ [**Done.**](https://github.com/DesignSafe-CI/DS-User-Guide/commit/96c44c0)
-
-Confirm whether these changes affect M. Esteva!
-
-### Rename
-
-- **Rename** "Data Management Plan Template" to "Data Management Plan (DMP) Guide".
-
-### Rearrange
-
-- **Move** "Setting Path …" to "Transferring Your Data".
-- **Move** "Data Management Plan" to "Resources for Users".
-- **Move** "Curating Data in Experimental Facilities" to "Resources for Users".
-
-\* Freeze other "Managing Data" content until @cockerilltim's new stuff comes in.
-
-## 3. Changes To Do Later
-
-➡️ [**In progress.**](https://github.com/DesignSafe-CI/DS-User-Guide/pull/185)
-
-### Rearrange
-
-- **Move** "Simulation Apps" up into "Tools & Apps".
-- **Reorder** "Tools & Apps" to match [website's "Tools & Apps" overview page][web-ta-page].
-- **Move** "Citing DesignSafe" to bottom of "DesignSafe Essentials" section as "How to Cite DesignSafe".
-- **Put** "Popular" tools and apps as their own item in "Tools & Apps" (like Jupyter).
- - **Move** "Popular" items to top of "Tools & Apps"
- - **Order** "Popular" apps: 1) OpenSees, 2) ADCIRC, 3) OpenFOAM, 4) Jupyter, 5) MATLAB.
- - _non-Documentation tasks_:
- - On [website "Tools & Apps" overview page][web-ta-page], make OpenFOAM "popular"
- - On [website "Tools & Apps" overview page][web-ta-page], add "Wind" to OpenFOAM as first category.
-- **Move** "DesignSafe FAQ" to "DesignSafe Essentials" section
- - C. Jansen will update
- - T. Cockerill will help review
-
-[web-ta-page]: https://www.designsafe-ci.org/use-designsafe/tools-applications/
-
-### Delete
-
-- **Delete** "Documentation Overview".
-- **Delete** bulleted list from "Data Depot" section's "Overview".
diff --git a/user-guide/docs/account-help.md b/user-guide/account-help.md
similarity index 100%
rename from user-guide/docs/account-help.md
rename to user-guide/account-help.md
diff --git a/user-guide/docs/analysis.md b/user-guide/analysis.md
similarity index 100%
rename from user-guide/docs/analysis.md
rename to user-guide/analysis.md
diff --git a/user-guide/docs/analysis/hvsrweb.md b/user-guide/analysis/hvsrweb.md
similarity index 100%
rename from user-guide/docs/analysis/hvsrweb.md
rename to user-guide/analysis/hvsrweb.md
diff --git a/user-guide/docs/analysis/imgs/HVSR-1.png b/user-guide/analysis/imgs/HVSR-1.png
similarity index 100%
rename from user-guide/docs/analysis/imgs/HVSR-1.png
rename to user-guide/analysis/imgs/HVSR-1.png
diff --git a/user-guide/docs/analysis/imgs/HVSR-2.png b/user-guide/analysis/imgs/HVSR-2.png
similarity index 100%
rename from user-guide/docs/analysis/imgs/HVSR-2.png
rename to user-guide/analysis/imgs/HVSR-2.png
diff --git a/user-guide/docs/analysis/imgs/HVSR-3.png b/user-guide/analysis/imgs/HVSR-3.png
similarity index 100%
rename from user-guide/docs/analysis/imgs/HVSR-3.png
rename to user-guide/analysis/imgs/HVSR-3.png
diff --git a/user-guide/docs/analysis/imgs/HVSR-4.png b/user-guide/analysis/imgs/HVSR-4.png
similarity index 100%
rename from user-guide/docs/analysis/imgs/HVSR-4.png
rename to user-guide/analysis/imgs/HVSR-4.png
diff --git a/user-guide/docs/analysis/imgs/HVSR-5.png b/user-guide/analysis/imgs/HVSR-5.png
similarity index 100%
rename from user-guide/docs/analysis/imgs/HVSR-5.png
rename to user-guide/analysis/imgs/HVSR-5.png
diff --git a/user-guide/docs/analysis/imgs/HVSR-6.png b/user-guide/analysis/imgs/HVSR-6.png
similarity index 100%
rename from user-guide/docs/analysis/imgs/HVSR-6.png
rename to user-guide/analysis/imgs/HVSR-6.png
diff --git a/user-guide/docs/analysis/imgs/HVSR-7.png b/user-guide/analysis/imgs/HVSR-7.png
similarity index 100%
rename from user-guide/docs/analysis/imgs/HVSR-7.png
rename to user-guide/analysis/imgs/HVSR-7.png
diff --git a/user-guide/docs/analysis/matlab.md b/user-guide/analysis/matlab.md
similarity index 100%
rename from user-guide/docs/analysis/matlab.md
rename to user-guide/analysis/matlab.md
diff --git a/user-guide/docs/analysis/overview.md b/user-guide/analysis/overview.md
similarity index 100%
rename from user-guide/docs/analysis/overview.md
rename to user-guide/analysis/overview.md
diff --git a/user-guide/docs/analysis/swbatch.md b/user-guide/analysis/swbatch.md
similarity index 100%
rename from user-guide/docs/analysis/swbatch.md
rename to user-guide/analysis/swbatch.md
diff --git a/user-guide/docs/css/README.md b/user-guide/css/README.md
similarity index 100%
rename from user-guide/docs/css/README.md
rename to user-guide/css/README.md
diff --git a/user-guide/docs/css/ds-docs.css b/user-guide/css/ds-user-guide.css
similarity index 95%
rename from user-guide/docs/css/ds-docs.css
rename to user-guide/css/ds-user-guide.css
index 02a91e1c..c5027274 100644
--- a/user-guide/docs/css/ds-docs.css
+++ b/user-guide/css/ds-user-guide.css
@@ -47,10 +47,8 @@ a[class*=card--]:hover :is( .h1, .h2, .h3, .h4, .h5, .h6 ) {
-/* TACC-DOCS */
-/* To customize TACC/TACC-Docs CSS */
-/* WARNING: These styles assume documentation is run "Via Docker" */
-/* https://github.com/TACC/TACC-Docs/blob/cbbf261/docs/css/core/tacc-docs.css */
+/* MKDOCS-TACC */
+/* To customize TACC/mkdocs-tacc CSS */
/* To force a logo `![]()
` loading an SVG to have dimensions */
/* FAQ: Happens if `swapImgSvgWithRawSvg.js` does not work or is unavailable */
@@ -68,7 +66,7 @@ a[class*=card--]:hover :is( .h1, .h2, .h3, .h4, .h5, .h6 ) {
--pad-horz: 0;
--link-pad-horz: 0;
}
-.wy-side-nav-search > a:has(.logo) {
+.wy-side-nav-search > a.logo {
margin-bottom: 0;
}
@@ -108,11 +106,11 @@ b {
-/* TACC-DOCS via DS-DOCS */
-/* To add CSS that should be moved to TACC/TACC-Docs */
+/* MKDOCS-TACC via DS-USER-GUIDE */
+/* To add CSS that should be moved to TACC/mkdocs-tacc */
/* To add space before and after icon from `_text_{ .fa fa.icon-name }` */
-[role="main"] .fa::before {
+.document .fa::before {
margin-inline: 0.5ch;
}
@@ -136,7 +134,7 @@ b {
-/* DS-DOCS */
+/* DS-USER-GUIDE */
/* To add CSS unique to DesignSafe/DS-User-Guide */
/* A custom horizontal rule to use between large documents */
diff --git a/user-guide/docs/curating/bestpractices.md b/user-guide/curating/bestpractices.md
similarity index 100%
rename from user-guide/docs/curating/bestpractices.md
rename to user-guide/curating/bestpractices.md
diff --git a/user-guide/docs/curating/faq.md b/user-guide/curating/faq.md
similarity index 100%
rename from user-guide/docs/curating/faq.md
rename to user-guide/curating/faq.md
diff --git a/user-guide/docs/curating/guides.md b/user-guide/curating/guides.md
similarity index 100%
rename from user-guide/docs/curating/guides.md
rename to user-guide/curating/guides.md
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similarity index 100%
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diff --git a/user-guide/docs/usecases/README.md b/user-guide/usecases/README.md
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rename to user-guide/usecases/README.md
index 778dccb7..12d621d7 100644
--- a/user-guide/docs/usecases/README.md
+++ b/user-guide/usecases/README.md
@@ -35,7 +35,9 @@ GitHub will create a forked repo in your user account.
### 3. Find Use Case
-Navigate to existing use case folder within `user-guide/docs/usecases/`. The folders are named after the PI, so find the folder with PI's name to edit your template. If one does not exist, you may create one (e.g. in `user-guide/docs/usecases/` add `the_pi_name/usecase.md`). **Always check you are only editing the PI's use case folder**.
+Navigate to existing use case folder within `user-guide/usecases/`[^1]. The folders are named after the PI, so find the folder with PI's name to edit your template. If one does not exist, you may create one (e.g. in `user-guide/usecases/`[^1] add `the_pi_name/usecase.md`). **Always check you are only editing the PI's use case folder**.
+
+[^1]: **`user-guide/usecases/` vs. `user-guide/docs/usecases/`**: The path is `user-guide/usecases/`. The images show an outdated path, `user-guide/docs/usecases/`. Find folders in `user-guide/usecases/`, **not** `user-guide/docs/usecases/`.
| PI use case folder |
| - |
@@ -43,7 +45,7 @@ Navigate to existing use case folder within `user-guide/docs/usecases/`. The fol
### 4. Edit Use Case
-Click on the `usecase.md` file in the usec ase folder to [Edit](https://docs.github.com/en/repositories/working-with-files/managing-files/editing-files) your use case.
+Click on the `usecase.md` file in the use case folder to [Edit](https://docs.github.com/en/repositories/working-with-files/managing-files/editing-files) your use case.
> **Note:**
> - The document is written in plain text.
@@ -102,7 +104,7 @@ In this case, we added an image called `mpm-algorithm.png`, which is located in
```
> **Note:**
-> Use a relative path `img/mpm-algorithm.png`, **do not use a full path** (e.g., [`https://github.com/DesignSafe-CI/DS-User-Guide/user-guide/docs/usecases/kumar/img/mpm-algorithm.png`](https://github.com/DesignSafe-CI/DS-User-Guide/user-guide/docs/usecases/kumar/img/mpm-algorithm.png)).
+> Use a relative path (like `img/mpm-algorithm.png`). **Do NOT use a full path** (like [`https://github.com/DesignSafe-CI/DS-User-Guide/blob/bcd070b/user-guide/docs/usecases/kumar/img/mpm-algorithm.png`](https://github.com/DesignSafe-CI/DS-User-Guide/blob/bcd070b/user-guide/docs/usecases/kumar/img/mpm-algorithm.png)).
You can use the "Preview" tab to check images and text formatting before commiting your changes.
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From bce1aa59189659a43f28e7e8983649fd4a62d88e Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 10:58:56 -0600
Subject: [PATCH 02/12] build: epic/v3 branch
---
.github/workflows/build-pprd.yml | 1 +
1 file changed, 1 insertion(+)
diff --git a/.github/workflows/build-pprd.yml b/.github/workflows/build-pprd.yml
index 0ac246a1..065c5d50 100644
--- a/.github/workflows/build-pprd.yml
+++ b/.github/workflows/build-pprd.yml
@@ -4,6 +4,7 @@ on:
push:
branches:
- pprd
+ - epic/v3
- any/branch-you-want
- refactor/gh-158-proper-theme
From d65a0bb3fb4df79ef1414a2955030368c9795891 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 14:17:23 -0600
Subject: [PATCH 03/12] fix: docs_dir not set (#241)
* fix: docs_dir not set
* build: this branch
---
.github/workflows/build-pprd.yml | 2 +-
mkdocs.yml | 1 +
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/.github/workflows/build-pprd.yml b/.github/workflows/build-pprd.yml
index 065c5d50..2612c86c 100644
--- a/.github/workflows/build-pprd.yml
+++ b/.github/workflows/build-pprd.yml
@@ -6,7 +6,7 @@ on:
- pprd
- epic/v3
- any/branch-you-want
- - refactor/gh-158-proper-theme
+ - fix/docs_dir-not-set
jobs:
docker:
diff --git a/mkdocs.yml b/mkdocs.yml
index d013227a..69200607 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -3,6 +3,7 @@ site_description: DesignSafe User Guide
site_url: https://designsafe-ci.org/user-guide/
repo_url: https://github.com/DesignSafe-CI/DS-User-Guide
edit_uri: edit/main/user-guide/
+docs_dir: user-guide
# NOTE: Unrecognized by MkDocs, but recognized by ReadTheDocs theme
site_favicon: https://www.designsafe-ci.org/favicon.ico
From 5039f4105a4af44162a32a158753289cce9765f8 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 17:06:50 -0600
Subject: [PATCH 04/12] prep: netlify support (#244)
---
.gitignore | 2 +
requirements.txt | 243 +++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 245 insertions(+)
create mode 100644 requirements.txt
diff --git a/.gitignore b/.gitignore
index dda9fa43..62661783 100644
--- a/.gitignore
+++ b/.gitignore
@@ -6,6 +6,8 @@ site/
# python
.python-version
+# python: only for Netlify, which does not support pyproject.toml yet
+requirements.txt
# ide
.vs
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 00000000..df45f168
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,243 @@
+babel==2.17.0 ; python_version >= "3.10" and python_version < "3.13" \
+ --hash=sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d \
+ --hash=sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2
+click==8.3.1 ; python_version >= "3.10" and python_version < "3.13" \
+ --hash=sha256:12ff4785d337a1bb490bb7e9c2b1ee5da3112e94a8622f26a6c77f5d2fc6842a \
+ --hash=sha256:981153a64e25f12d547d3426c367a4857371575ee7ad18df2a6183ab0545b2a6
+colorama==0.4.6 ; python_version >= "3.10" and python_version < "3.13" and platform_system == "Windows" \
+ --hash=sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44 \
+ --hash=sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6
+ghp-import==2.1.0 ; python_version >= "3.10" and python_version < "3.13" \
+ --hash=sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619 \
+ --hash=sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343
+jinja2==3.1.6 ; python_version >= "3.10" and python_version < "3.13" \
+ --hash=sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d \
+ --hash=sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67
+markdown==3.3.7 ; python_version >= "3.10" and python_version < "3.13" \
+ --hash=sha256:cbb516f16218e643d8e0a95b309f77eb118cb138d39a4f27851e6a63581db874 \
+ --hash=sha256:f5da449a6e1c989a4cea2631aa8ee67caa5a2ef855d551c88f9e309f4634c621
+markupsafe==3.0.3 ; python_version >= "3.10" and python_version < "3.13" \
+ --hash=sha256:0303439a41979d9e74d18ff5e2dd8c43ed6c6001fd40e5bf2e43f7bd9bbc523f \
+ --hash=sha256:068f375c472b3e7acbe2d5318dea141359e6900156b5b2ba06a30b169086b91a \
+ --hash=sha256:0bf2a864d67e76e5c9a34dc26ec616a66b9888e25e7b9460e1c76d3293bd9dbf \
+ --hash=sha256:0db14f5dafddbb6d9208827849fad01f1a2609380add406671a26386cdf15a19 \
+ --hash=sha256:0eb9ff8191e8498cca014656ae6b8d61f39da5f95b488805da4bb029cccbfbaf \
+ --hash=sha256:0f4b68347f8c5eab4a13419215bdfd7f8c9b19f2b25520968adfad23eb0ce60c \
+ --hash=sha256:1085e7fbddd3be5f89cc898938f42c0b3c711fdcb37d75221de2666af647c175 \
+ --hash=sha256:116bb52f642a37c115f517494ea5feb03889e04df47eeff5b130b1808ce7c219 \
+ --hash=sha256:12c63dfb4a98206f045aa9563db46507995f7ef6d83b2f68eda65c307c6829eb \
+ --hash=sha256:133a43e73a802c5562be9bbcd03d090aa5a1fe899db609c29e8c8d815c5f6de6 \
+ --hash=sha256:1353ef0c1b138e1907ae78e2f6c63ff67501122006b0f9abad68fda5f4ffc6ab \
+ --hash=sha256:15d939a21d546304880945ca1ecb8a039db6b4dc49b2c5a400387cdae6a62e26 \
+ --hash=sha256:177b5253b2834fe3678cb4a5f0059808258584c559193998be2601324fdeafb1 \
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+ --hash=sha256:d76623373421df22fb4cf8817020cbb7ef15c725b9d5e45f17e189bfc384190f \
+ --hash=sha256:ebc55a14a21cb14062aa4162f906cd962b28e2e9ea38f9b4391244cd8de4ae0b \
+ --hash=sha256:eda16858a3cab07b80edaf74336ece1f986ba330fdb8ee0d6c0d68fe82bc96be \
+ --hash=sha256:ee2922902c45ae8ccada2c5b501ab86c36525b883eff4255313a253a3160861c \
+ --hash=sha256:efd7b85f94a6f21e4932043973a7ba2613b059c4a000551892ac9f1d11f5baf3 \
+ --hash=sha256:f7057c9a337546edc7973c0d3ba84ddcdf0daa14533c2065749c9075001090e6 \
+ --hash=sha256:fa160448684b4e94d80416c0fa4aac48967a969efe22931448d853ada8baf926 \
+ --hash=sha256:fc09d0aa354569bc501d4e787133afc08552722d3ab34836a80547331bb5d4a0
+six==1.17.0 ; python_version >= "3.10" and python_version < "3.13" \
+ --hash=sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274 \
+ --hash=sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81
+watchdog==6.0.0 ; python_version >= "3.10" and python_version < "3.13" \
+ --hash=sha256:07df1fdd701c5d4c8e55ef6cf55b8f0120fe1aef7ef39a1c6fc6bc2e606d517a \
+ --hash=sha256:20ffe5b202af80ab4266dcd3e91aae72bf2da48c0d33bdb15c66658e685e94e2 \
+ --hash=sha256:212ac9b8bf1161dc91bd09c048048a95ca3a4c4f5e5d4a7d1b1a7d5752a7f96f \
+ --hash=sha256:2cce7cfc2008eb51feb6aab51251fd79b85d9894e98ba847408f662b3395ca3c \
+ --hash=sha256:490ab2ef84f11129844c23fb14ecf30ef3d8a6abafd3754a6f75ca1e6654136c \
+ --hash=sha256:6eb11feb5a0d452ee41f824e271ca311a09e250441c262ca2fd7ebcf2461a06c \
+ --hash=sha256:6f10cb2d5902447c7d0da897e2c6768bca89174d0c6e1e30abec5421af97a5b0 \
+ --hash=sha256:7607498efa04a3542ae3e05e64da8202e58159aa1fa4acddf7678d34a35d4f13 \
+ --hash=sha256:76aae96b00ae814b181bb25b1b98076d5fc84e8a53cd8885a318b42b6d3a5134 \
+ --hash=sha256:7a0e56874cfbc4b9b05c60c8a1926fedf56324bb08cfbc188969777940aef3aa \
+ --hash=sha256:82dc3e3143c7e38ec49d61af98d6558288c415eac98486a5c581726e0737c00e \
+ --hash=sha256:9041567ee8953024c83343288ccc458fd0a2d811d6a0fd68c4c22609e3490379 \
+ --hash=sha256:90c8e78f3b94014f7aaae121e6b909674df5b46ec24d6bebc45c44c56729af2a \
+ --hash=sha256:9513f27a1a582d9808cf21a07dae516f0fab1cf2d7683a742c498b93eedabb11 \
+ --hash=sha256:9ddf7c82fda3ae8e24decda1338ede66e1c99883db93711d8fb941eaa2d8c282 \
+ --hash=sha256:a175f755fc2279e0b7312c0035d52e27211a5bc39719dd529625b1930917345b \
+ --hash=sha256:a1914259fa9e1454315171103c6a30961236f508b9b623eae470268bbcc6a22f \
+ --hash=sha256:afd0fe1b2270917c5e23c2a65ce50c2a4abb63daafb0d419fde368e272a76b7c \
+ --hash=sha256:bc64ab3bdb6a04d69d4023b29422170b74681784ffb9463ed4870cf2f3e66112 \
+ --hash=sha256:bdd4e6f14b8b18c334febb9c4425a878a2ac20efd1e0b231978e7b150f92a948 \
+ --hash=sha256:c7ac31a19f4545dd92fc25d200694098f42c9a8e391bc00bdd362c5736dbf881 \
+ --hash=sha256:c7c15dda13c4eb00d6fb6fc508b3c0ed88b9d5d374056b239c4ad1611125c860 \
+ --hash=sha256:c897ac1b55c5a1461e16dae288d22bb2e412ba9807df8397a635d88f671d36c3 \
+ --hash=sha256:cbafb470cf848d93b5d013e2ecb245d4aa1c8fd0504e863ccefa32445359d680 \
+ --hash=sha256:d1cdb490583ebd691c012b3d6dae011000fe42edb7a82ece80965b42abd61f26 \
+ --hash=sha256:e3df4cbb9a450c6d49318f6d14f4bbc80d763fa587ba46ec86f99f9e6876bb26 \
+ --hash=sha256:e6439e374fc012255b4ec786ae3c4bc838cd7309a540e5fe0952d03687d8804e \
+ --hash=sha256:e6f0e77c9417e7cd62af82529b10563db3423625c5fce018430b249bf977f9e8 \
+ --hash=sha256:e7631a77ffb1f7d2eefa4445ebbee491c720a5661ddf6df3498ebecae5ed375c \
+ --hash=sha256:ef810fbf7b781a5a593894e4f439773830bdecb885e6880d957d5b9382a960d2
From bf3f9400c86a8f5f4daa6a3795f8106ed6cbd953 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 17:40:43 -0600
Subject: [PATCH 05/12] ci: support Netlify via Makefile & .gitignore (#243)
* ci: support Netlify via Makefile & .gitignore
* ci: netlify workflows (UNTESTED)
* ci: validation workflow (UNTESTED)
* ci: update reqs workflow (UNTESTED)
* ci: delete netlify workflows (NEW APPROACH COMING)
* ci: update reqs workflow (ALLOW TEST)
* ci: fix workflow name
* fix: workflow typos
* chore: auto-update requirements.txt [bot]
* refactor: workflows
* build: this branch
* test: attempt change reqs, expect validation error
* fix: unepxcted syntax in workflows
* Revert "test: attempt change reqs, expect validation error"
This reverts commit c662bd06d4c29614e9f030dfd532695c71aa34a4.
* docs: reword [skip ci]
* increase Python version support
* ci: get python version from pyproject.toml
* Revert "increase Python version support"
This reverts commit a650f7c5420cc7fde3bf1dc664995017554db0a0.
* test: new PR triggering Netlify preview server (#242)
* delete unused workflow
* ci: remove branch that will be merged soon
* docs: explain workflows
* chore: delete unnecessary Make command
* docs: TESTING
* fix: TESTING.md ToC
* ci: validate this branch
* test: change reqs
* ci: skip update-reqs if nothing updated
* ci: prettier output for validate-reqs
* refactor: requiremnts workflows
* fix; workflow bugs
* refactor: simpplify reqs-validate
* fix: reqs change reverted manually
* fix: do not run workflows twice
* fix: limit excess workflow runs
* refactor: rename workflows and jobs
* test: change requirements
* Revert "test: change requirements"
This reverts commit fbf1e28c2a6d9e4ecb691b473aa0769c91d3f49b.
---------
Co-authored-by: github-actions[bot]
---
.github/workflows/build-pprd.yml | 1 -
.github/workflows/build-preview.yml | 39 ----------
.github/workflows/requirements-validate.yml | 41 ++++++++++
.github/workflows/requirments-sync.yml | 85 +++++++++++++++++++++
Makefile | 7 ++
TESTING.md | 29 ++++---
6 files changed, 151 insertions(+), 51 deletions(-)
delete mode 100644 .github/workflows/build-preview.yml
create mode 100644 .github/workflows/requirements-validate.yml
create mode 100644 .github/workflows/requirments-sync.yml
diff --git a/.github/workflows/build-pprd.yml b/.github/workflows/build-pprd.yml
index 2612c86c..6cf9834e 100644
--- a/.github/workflows/build-pprd.yml
+++ b/.github/workflows/build-pprd.yml
@@ -6,7 +6,6 @@ on:
- pprd
- epic/v3
- any/branch-you-want
- - fix/docs_dir-not-set
jobs:
docker:
diff --git a/.github/workflows/build-preview.yml b/.github/workflows/build-preview.yml
deleted file mode 100644
index ee139b8f..00000000
--- a/.github/workflows/build-preview.yml
+++ /dev/null
@@ -1,39 +0,0 @@
-name: ❌ DS User Guide Previews
-
-on:
- workflow_dispatch:
- push:
- branches:
- - '*'
-
-jobs:
- docker:
- runs-on: ubuntu-latest
- steps:
- -
- name: Set up Docker Buildx
- uses: docker/setup-buildx-action@v1
- -
- name: Login to DockerHub
- uses: docker/login-action@v1
- with:
- username: ${{ secrets.DOCKERHUB_USERNAME }}
- password: ${{ secrets.DOCKERHUB_TOKEN }}
- -
- name: Build and push
- uses: docker/build-push-action@v2
- with:
- push: true
- tags: designsafeci/ds-use-case-template:latest
- -
- name: Post build status in slack
- id: slack
- uses: slackapi/slack-github-action@v1.18.0
- with:
- # This data can be any valid JSON from a previous step in the GitHub Action
- payload: |
- {
- "build_status": "${{ job.status }}"
- }
- env:
- SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }}
diff --git a/.github/workflows/requirements-validate.yml b/.github/workflows/requirements-validate.yml
new file mode 100644
index 00000000..de140da0
--- /dev/null
+++ b/.github/workflows/requirements-validate.yml
@@ -0,0 +1,41 @@
+# Humans should not manage requirements.txt (bots do)
+name: Validate requirements.txt not changed by human
+
+on:
+ pull_request:
+ paths: ['requirements.txt']
+ types: [opened, synchronize, reopened]
+
+jobs:
+ reject-requirements-drift:
+ runs-on: ubuntu-latest
+
+ # Skip if the last commit was from the bot (prevent unnecessary check)
+ if: github.event.head_commit.author.name != 'github-actions[bot]'
+
+ steps:
+ - name: Checkout code
+ uses: actions/checkout@v4
+ with:
+ fetch-depth: 0 # full history
+
+ - name: Check if requirements.txt was modified unexpectedly
+ run: |
+ # For PRs, check against base branch
+ # For pushes, check last commit
+ if [ "${{ github.event_name }}" = "pull_request" ]; then
+ BASE_REF="${{ github.event.pull_request.base.sha }}"
+ COMPARE_RANGE="$BASE_REF...HEAD"
+ else
+ COMPARE_RANGE="HEAD~1..HEAD"
+ fi
+
+ # If requirements.txt modified in that range
+ if git diff --name-only $COMPARE_RANGE | grep -q "^requirements.txt$"; then
+ echo "::error::You may NOT edit 'requirements.txt'"
+ echo "::warning::Undo your changes to requirements.txt, so robot can maintain it."
+ echo "::notice::To pin dependencies, use 'poetry add '."
+ exit 1
+ fi
+
+ echo "'requirements.txt' unchanged (or only changed by bot)"
diff --git a/.github/workflows/requirments-sync.yml b/.github/workflows/requirments-sync.yml
new file mode 100644
index 00000000..2c38f60f
--- /dev/null
+++ b/.github/workflows/requirments-sync.yml
@@ -0,0 +1,85 @@
+# Netlify requires requirements.txt (humans do not)
+name: Sync requirements.txt with pyproject.toml
+
+on:
+ pull_request:
+ paths: ['pyproject.toml']
+ types: [opened, synchronize, reopened]
+
+permissions:
+ contents: write
+
+jobs:
+ detect-requirements-delta:
+ runs-on: ubuntu-latest
+ outputs:
+ has_change: ${{ steps.detect.outputs.has_change }}
+
+ # Skip if the last commit was from the bot (prevent infinite loops)
+ if: github.event.head_commit.author.name != 'github-actions[bot]'
+
+ steps:
+ - name: Checkout code
+ uses: actions/checkout@v4
+ with:
+ ref: ${{ github.head_ref || github.ref_name }}
+
+ - name: Set up Python
+ uses: actions/setup-python@v5
+ with:
+ python-version-file: 'pyproject.toml'
+
+ - name: Install Poetry
+ run: pip install poetry
+
+ - name: Detect whether requirements.txt has change
+ id: detect
+ run: |
+ output=$(make requirements.txt 2>&1)
+ echo "$output"
+
+ # Check whether Make output suggests file is up to date
+ if echo "$output" | grep -qi "up to date\|up-to-date\|already up to date"; then
+ echo "has_change=false" >> $GITHUB_OUTPUT
+ echo "::notice::requirements.txt seems up to date"
+ else
+ echo "has_change=true" >> $GITHUB_OUTPUT
+ fi
+
+ commit-requirements-delta:
+ runs-on: ubuntu-latest
+ needs: detect-requirements-delta
+ if: needs.detect-requirements-delta.outputs.has_change == 'true'
+
+ steps:
+ - name: Checkout code
+ uses: actions/checkout@v4
+ with:
+ ref: ${{ github.head_ref || github.ref_name }}
+ token: ${{ secrets.GITHUB_TOKEN }}
+
+ - name: Set up Python
+ uses: actions/setup-python@v5
+ with:
+ python-version-file: 'pyproject.toml'
+
+ - name: Install Poetry
+ run: pip install poetry
+
+ - name: Generate requirements.txt
+ run: make requirements.txt
+
+ - name: Configure Git
+ run: |
+ git config user.name "github-actions[bot]"
+ git config user.email "github-actions[bot]@users.noreply.github.com"
+
+ - name: Commit requirements.txt if changed
+ run: |
+ git add -f requirements.txt
+ if git diff --staged --quiet; then
+ echo "No changes to requirements.txt"
+ else
+ git commit -m "chore: auto-update requirements.txt [bot]"
+ git push
+ fi
diff --git a/Makefile b/Makefile
index a4ca235d..b4707b08 100644
--- a/Makefile
+++ b/Makefile
@@ -1,6 +1,13 @@
# WARNING: Using `docker-compose` is deprecated
DOCKER_COMPOSE_CMD := $(shell if command -v docker-compose > /dev/null; then echo "docker-compose"; else echo "docker compose"; fi)
+
+requirements.txt: poetry.lock
+ pip install --user poetry-plugin-export \
+ && poetry export -f requirements.txt --output requirements.txt \
+ && pip uninstall --yes poetry-plugin-export
+
+
.PHONY: build
build:
$(DOCKER_COMPOSE_CMD) -f ./docker-compose.yml build
diff --git a/TESTING.md b/TESTING.md
index c1b39cd0..5a5ab2d4 100644
--- a/TESTING.md
+++ b/TESTING.md
@@ -1,24 +1,31 @@
# How to Test
-## Local Server
+- [On Free Machine](#on-free-machine)
+- [On Your Machine](#on-your-machine)
+- [On Our Machine](#on-our-machine)
-> [!WARNING]
-> Testing is manual and requires using a command prompt.
+## On Free Machine
+
+> [!TIP]
+> Create a pull request; automatically get a remote preview server.
-You can [test with **PIP** or **Poetry** or **Docker** or **Make**](https://tacc.github.io/mkdocs-tacc/test/#test-locally) as a client.
+## On Your Machine
-## Remote Server
+> [!NOTE]
+> Run a server manually or programatically on your machine.
-> [!WARNING]
-> Your test may be overridden by others working on the same test server.
+You can [test with **PIP** or **Poetry** or **Docker** or **Make**](https://tacc.github.io/mkdocs-tacc/test/#test-locally).
-Deploy to our test server:
+## On Our Machine
+
+> [!WARNING]
+> Only authorized contributors may deploy to our test server.
0. Have a branch with changes ready to deploy.
-1. On your branch, edit the [pre-prod workflow config](./.github/workflows/build-pprd.yml) `branches:` list.
+1. On your branch, edit the [pre-prod workflow config](./.github/workflows/build-pprd.yml) `branches:` list to include your branch.
2. Commit the change to trigger the workflow.
3. Wait for [GitHub action](https://github.com/DesignSafe-CI/ds-user-guide/actions) to complete.
4. Load https://pprd.designsafe-ci.org/user-guide/.
-> [!TIP]
-> In the future, we will offer a dedicated test server. Task is pending [issue #61](https://github.com/DesignSafe-CI/DS-User-Guide/issues/61).
+> [!CAUTION]
+> Others can override your test by deploying to this server.
From 80a4ea636f6ae127a090fc6514d36e9cc889a375 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 18:31:01 -0600
Subject: [PATCH 06/12] refactor: simplify build workflow (#245)
* refactor: merge build workflows
* refactor: rename build workflows
* feat: build sub-branches
* fix: regex, support slash (convert to dash)
* fix: wrong tag for docker
* chore: restore regex, which was okay
---
.github/workflows/build-pprd.yml | 60 --------------------------------
.github/workflows/build.yml | 31 ++++++++++++++---
2 files changed, 26 insertions(+), 65 deletions(-)
delete mode 100644 .github/workflows/build-pprd.yml
diff --git a/.github/workflows/build-pprd.yml b/.github/workflows/build-pprd.yml
deleted file mode 100644
index 6cf9834e..00000000
--- a/.github/workflows/build-pprd.yml
+++ /dev/null
@@ -1,60 +0,0 @@
-name: DS User Guide PPRD Builds
-
-on:
- push:
- branches:
- - pprd
- - epic/v3
- - any/branch-you-want
-
-jobs:
- docker:
- runs-on: ubuntu-latest
- steps:
- -
- name: Set up Docker Buildx
- uses: docker/setup-buildx-action@v2
- -
- name: Checkout repo
- uses: actions/checkout@v3
- -
- name: Get shortsha and branch name
- id: vars
- run: |
- if [ -z "$EVENT_SHA" ]; then SHORT_SHA=${GITHUB_SHA::8}; else SHORT_SHA=${EVENT_SHA::8}; fi
- echo ::set-output name=sha_short::${SHORT_SHA}
- SHORT_REF=`git symbolic-ref --short HEAD | sed 's/[^[:alnum:]\.\_\-]/-/g'`
- echo ::set-output name=ref_short::${SHORT_REF}
- env:
- EVENT_SHA: ${{ github.event.client_payload.sha }}
- - name: Print vars
- run: |
- echo $SHORT_SHA
- echo $SHORT_REF
- env:
- SHORT_SHA: ${{ steps.vars.outputs.sha_short }}
- SHORT_REF: ${{ steps.vars.outputs.ref_short }}
- -
- name: Login to Docker Hub
- uses: docker/login-action@v2
- with:
- username: ${{ secrets.DOCKERHUB_USERNAME }}
- password: ${{ secrets.DOCKERHUB_TOKEN }}
- -
- name: Build and push PPRD image
- uses: docker/build-push-action@v3
- with:
- push: true
- tags: designsafeci/ds-user-guide:pprd,designsafeci/ds-user-guide:${{ steps.vars.outputs.sha_short }},designsafeci/ds-user-guide:${{ steps.vars.outputs.ref_short }}
- -
- name: Post build status in slack
- id: slack
- uses: slackapi/slack-github-action@v1.23.0
- with:
- # This data can be any valid JSON from a previous step in the GitHub Action
- payload: |
- {
- "build_status": "${{ job.status }}"
- }
- env:
- SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }}
diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index e7250ef8..dbfce847 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -1,4 +1,4 @@
-name: DS User Guide Builds
+name: Build and Push
on:
workflow_dispatch:
@@ -11,6 +11,10 @@ on:
push:
branches:
- main
+ - pprd
+ - epic/v3
+ - epic/v3--*
+ - any/branch-you-want
jobs:
docker:
@@ -32,13 +36,30 @@ jobs:
echo ::set-output name=ref_short::${SHORT_REF}
env:
EVENT_SHA: ${{ github.event.client_payload.sha }}
- - name: Print vars
+ -
+ name: Determine environment tag
+ id: env_tag
+ run: |
+ if [ -n "${{ inputs.tag_custom }}" ]; then
+ ENV_TAG="${{ inputs.tag_custom }}"
+ elif [ "${{ github.ref_name }}" = "main" ]; then
+ ENV_TAG="latest"
+ elif [ "${{ github.ref_name }}" = "pprd" ]; then
+ ENV_TAG="pprd"
+ else
+ ENV_TAG="${{ steps.vars.outputs.ref_short }}"
+ fi
+ echo ::set-output name=env_tag::${ENV_TAG}
+ -
+ name: Print vars
run: |
- echo $SHORT_SHA
- echo $SHORT_REF
+ echo "Short SHA: $SHORT_SHA"
+ echo "Short Ref: $SHORT_REF"
+ echo "Environment Tag: $ENV_TAG"
env:
SHORT_SHA: ${{ steps.vars.outputs.sha_short }}
SHORT_REF: ${{ steps.vars.outputs.ref_short }}
+ ENV_TAG: ${{ steps.env_tag.outputs.env_tag }}
-
name: Login to Docker Hub
uses: docker/login-action@v2
@@ -50,7 +71,7 @@ jobs:
uses: docker/build-push-action@v3
with:
push: true
- tags: designsafeci/ds-user-guide:${{ inputs.tag_custom && inputs.tag_custom || 'latest' }},designsafeci/ds-user-guide:${{ steps.vars.outputs.sha_short }},designsafeci/ds-user-guide:${{ steps.vars.outputs.ref_short }}
+ tags: designsafeci/ds-user-guide:${{ steps.env_tag.outputs.env_tag }},designsafeci/ds-user-guide:${{ steps.vars.outputs.sha_short }},designsafeci/ds-user-guide:${{ steps.vars.outputs.ref_short }}
-
name: Post build status in slack
id: slack
From 2a6a675bb6f5462d5729964d700f22e94a1bf660 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 18:38:25 -0600
Subject: [PATCH 07/12] chore: version 3
---
pyproject.toml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/pyproject.toml b/pyproject.toml
index 6f9ec7c3..c4ac251f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -7,7 +7,7 @@ package-mode = true # to make PIP use [project.dependencies]
[project]
name = "ds-user-guide"
-version = "0.1.0"
+version = "3.0.0"
description = "User Guide for DesignSafe"
authors = [
{ name = "TACC COA CMD", email = "coa-cmd@tacc.utexas.edu" }
From c0a4e789ca34a55abc7e3c1a2591114adc74f226 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 18:41:26 -0600
Subject: [PATCH 08/12] fix: ignore validation of reqs for this branch
because we must introduce the file
---
.github/workflows/requirements-validate.yml | 1 +
1 file changed, 1 insertion(+)
diff --git a/.github/workflows/requirements-validate.yml b/.github/workflows/requirements-validate.yml
index de140da0..34ca34d6 100644
--- a/.github/workflows/requirements-validate.yml
+++ b/.github/workflows/requirements-validate.yml
@@ -5,6 +5,7 @@ on:
pull_request:
paths: ['requirements.txt']
types: [opened, synchronize, reopened]
+ branches-ignore: ['epic/v3']
jobs:
reject-requirements-drift:
From d552dd249f52aa3f27b6634b92456e3405ab44da Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 18:53:31 -0600
Subject: [PATCH 09/12] ci: netlify.toml
---
netlify.toml | 7 +++++++
1 file changed, 7 insertions(+)
create mode 100644 netlify.toml
diff --git a/netlify.toml b/netlify.toml
new file mode 100644
index 00000000..5831d00f
--- /dev/null
+++ b/netlify.toml
@@ -0,0 +1,7 @@
+[build]
+base = "/"
+publish = "/site"
+command = "mkdocs build"
+
+[build.environment]
+PYTHON_VERSION = "3.12"
From a6ca6106a5b0e17e15506990a2affdd383b7b1e8 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 18:57:00 -0600
Subject: [PATCH 10/12] fix: ignore validation of reqs FOR REAL (?)
---
.github/workflows/requirements-validate.yml | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/.github/workflows/requirements-validate.yml b/.github/workflows/requirements-validate.yml
index 34ca34d6..38720ebc 100644
--- a/.github/workflows/requirements-validate.yml
+++ b/.github/workflows/requirements-validate.yml
@@ -5,10 +5,13 @@ on:
pull_request:
paths: ['requirements.txt']
types: [opened, synchronize, reopened]
- branches-ignore: ['epic/v3']
jobs:
reject-requirements-drift:
+ # To temporarily ignore epic/v3 branch, which introduces requirements.txt
+ # TODO: Delete this after merging #246
+ if: "!startsWith(github.head_ref, 'epic/')"
+
runs-on: ubuntu-latest
# Skip if the last commit was from the bot (prevent unnecessary check)
From d7bdd63f39742c095ffc1513c04bde5c468fe422 Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 18:58:43 -0600
Subject: [PATCH 11/12] chore: whitespace formatting
---
.github/workflows/build.yml | 32 ++++++++++++++++----------------
1 file changed, 16 insertions(+), 16 deletions(-)
diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index dbfce847..2ab4c8d8 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -20,14 +20,14 @@ jobs:
docker:
runs-on: ubuntu-latest
steps:
- -
- name: Set up Docker Buildx
+
+ - name: Set up Docker Buildx
uses: docker/setup-buildx-action@v2
- -
- name: Checkout repo
+
+ - name: Checkout repo
uses: actions/checkout@v3
- -
- name: Get shortsha and branch name
+
+ - name: Get shortsha and branch name
id: vars
run: |
if [ -z "$EVENT_SHA" ]; then SHORT_SHA=${GITHUB_SHA::8}; else SHORT_SHA=${EVENT_SHA::8}; fi
@@ -36,8 +36,8 @@ jobs:
echo ::set-output name=ref_short::${SHORT_REF}
env:
EVENT_SHA: ${{ github.event.client_payload.sha }}
- -
- name: Determine environment tag
+
+ - name: Determine environment tag
id: env_tag
run: |
if [ -n "${{ inputs.tag_custom }}" ]; then
@@ -50,8 +50,8 @@ jobs:
ENV_TAG="${{ steps.vars.outputs.ref_short }}"
fi
echo ::set-output name=env_tag::${ENV_TAG}
- -
- name: Print vars
+
+ - name: Print vars
run: |
echo "Short SHA: $SHORT_SHA"
echo "Short Ref: $SHORT_REF"
@@ -60,20 +60,20 @@ jobs:
SHORT_SHA: ${{ steps.vars.outputs.sha_short }}
SHORT_REF: ${{ steps.vars.outputs.ref_short }}
ENV_TAG: ${{ steps.env_tag.outputs.env_tag }}
- -
- name: Login to Docker Hub
+
+ - name: Login to Docker Hub
uses: docker/login-action@v2
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
- -
- name: Build and push
+
+ - name: Build and push
uses: docker/build-push-action@v3
with:
push: true
tags: designsafeci/ds-user-guide:${{ steps.env_tag.outputs.env_tag }},designsafeci/ds-user-guide:${{ steps.vars.outputs.sha_short }},designsafeci/ds-user-guide:${{ steps.vars.outputs.ref_short }}
- -
- name: Post build status in slack
+
+ - name: Post build status in slack
id: slack
uses: slackapi/slack-github-action@v1.23.0
with:
From 6b1cf5e735655e4dc91d966d0d62ac0805a9c93e Mon Sep 17 00:00:00 2001
From: Wesley B <62723358+wesleyboar@users.noreply.github.com>
Date: Tue, 9 Dec 2025 19:08:05 -0600
Subject: [PATCH 12/12] fix: notlify.toml
---
netlify.toml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/netlify.toml b/netlify.toml
index 5831d00f..d218701f 100644
--- a/netlify.toml
+++ b/netlify.toml
@@ -1,6 +1,6 @@
[build]
base = "/"
-publish = "/site"
+publish = "site"
command = "mkdocs build"
[build.environment]