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Merge pull request #4 from aaronkw/deepsea-scores
Fix e-value formatting
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docs/deepsea.rst

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@@ -72,12 +72,12 @@ Variant scores
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* **Disease Impact Score (DIS)**: DIS is calculated by training a logistic regression model that prioritizes likely disease-associated mutations on the basis of the predicted transcriptional or post-transcriptional regulatory effects of these mutations (See Zhou et. al, 2019). The predicted DIS probabilities are then converted into 'DIS e-values', computed based on the empirical distributions of predicted effects for gnomAD variants. The final DIS score is:
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.. math::
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-log10(DIS e-value_{feature})
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-log10(DIS evalue_{feature})
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* **Mean -log e-value (MLE)**: For each predicted regulatory feature effect (:math:`abs(p_{alt}-p_{ref}`)) of a variant, we calculate a 'feature e-value' based on the empirical distribution of that feature's effects among gnomAD variants (see above Regulatory feature scores: e-value). The MLE score of a variant is
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.. math::
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\sum -log10(e-value_{feature}) / N
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\sum -log10(evalue_{feature}) / N
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In-silico mutagenesis
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