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docs/clever.rst

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CLEVER is a framework for `ab initio` sequence-based prediction of mutation gene expression effects for primary human cell types. With this web interface, we provide an explorer of cell type-specific expression effect predictions. The current release contains all ClinVar variants within +/- 20kb of the representative TSS of a gene. We use 1000 Genomes variant effects predictions for z-score normalization. No effect threshold was employed for the current release of the data.
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The code for predicting expression effects for human genome variants and training new expression models is available at this `github repository <https://github.com/FunctionLab/KSENIA>`_.
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The code for predicting expression effects for human genome variants and training new expression models is available at this `github repository <https://github.com/ksenia007/CLEVER>`_.
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The CLEVER framework is described in the following manuscript:
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