Merge pull request #10 from HelenaLC/zarr_path

remove dependancy to getZarrArrayPath

Author: Artur-man

NAMESPACE

@@ -9,13 +9,13 @@ exportMethods(rotate)
 exportMethods(scale)
 exportMethods(translation)
 import(SpatialData)
+importFrom(DelayedArray,path)
 importFrom(DelayedArray,realize)
 importFrom(Rarr,zarr_overview)
 importFrom(S4Vectors,metadata)
 importFrom(SingleCellExperiment,int_colData)
 importFrom(SingleCellExperiment,int_metadata)
 importFrom(SpatialData,channels)
-importFrom(SpatialData,getZarrArrayPath)
 importFrom(dplyr,mutate)
 importFrom(dplyr,select)
 importFrom(ggforce,geom_circle)

R/plotImage.R

@@ -103,11 +103,11 @@ plotSpatialData <- \() ggplot() + scale_y_reverse() + .theme
 }
 
 # check if an image is rgb or not
-#' @importFrom SpatialData getZarrArrayPath
+#' @importFrom DelayedArray path
 #' @importFrom Rarr zarr_overview
 #' @noRd
 .get_img_dt <- \(a) {
-    pa <- getZarrArrayPath(a)
+    pa <- DelayedArray::path(a)
     df <- zarr_overview(pa, as_data_frame=TRUE)
     if (!is.null(dt <- df$data_type)) return(dt)
 }