From 5a952d48c69eb3f8782370cc5ccd41450edbb4a3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
 <83466805+jmillanacosta@users.noreply.github.com>
Date: Mon, 10 Jul 2023 07:52:11 +0000
Subject: [PATCH 1/3] Updated nmrML import that didn't resolve

---
 MSIO-edit.owl | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/MSIO-edit.owl b/MSIO-edit.owl
index f7880a8..ef5be4b 100644
--- a/MSIO-edit.owl
+++ b/MSIO-edit.owl
@@ -17,7 +17,7 @@
      xmlns:dc="http://purl.org/dc/elements/1.1/"
      xmlns:msio="http://purl.obolibrary.org/obo/MSIO.owl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/msio.owl">
-        <owl:imports rdf:resource="http://nmrML.org/nmrCV"/>
+        <owl:imports rdf:resource="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/MSIO_PSIMS_import.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/MSIO_CHMO_import.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/MSIO_OBI_import.owl"/>
@@ -2695,7 +2695,7 @@ Barcelona meeting, march 2015</obo:IAO_0000119>
                 <owl:someValuesFrom>
                     <owl:Class>
                         <owl:intersectionOf rdf:parseType="Collection">
-                            <rdf:Description rdf:about="http://nmrML.org/nmrCV#NMR:1000864"/>
+                            <rdf:Description rdf:about="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl#NMR:1000864"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000074"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000187"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000190"/>
@@ -3544,9 +3544,9 @@ doi:  10.1038/nbt.1614</obo:IAO_0000119>
                 <owl:someValuesFrom>
                     <owl:Class>
                         <owl:intersectionOf rdf:parseType="Collection">
-                            <rdf:Description rdf:about="http://nmrML.org/nmrCV#NMR:1000223"/>
-                            <rdf:Description rdf:about="http://nmrML.org/nmrCV#NMR:1000864"/>
-                            <rdf:Description rdf:about="http://nmrML.org/nmrCV#NMR:1400006"/>
+                            <rdf:Description rdf:about="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl#NMR:1000223"/>
+                            <rdf:Description rdf:about="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl#NMR:1000864"/>
+                            <rdf:Description rdf:about="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl#NMR:1400006"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000578"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000191"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000194"/>

From 43703bd5c93dcb29ca1ceef0b9b549845fbd0680 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
 <83466805+jmillanacosta@users.noreply.github.com>
Date: Mon, 10 Jul 2023 10:14:56 +0200
Subject: [PATCH 2/3] Fixed namespace

---
 MSIO-edit.owl | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/MSIO-edit.owl b/MSIO-edit.owl
index ef5be4b..918a415 100644
--- a/MSIO-edit.owl
+++ b/MSIO-edit.owl
@@ -2695,7 +2695,7 @@ Barcelona meeting, march 2015</obo:IAO_0000119>
                 <owl:someValuesFrom>
                     <owl:Class>
                         <owl:intersectionOf rdf:parseType="Collection">
-                            <rdf:Description rdf:about="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl#NMR:1000864"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/nmrCV#NMR:1000864"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000074"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000187"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000190"/>
@@ -3544,9 +3544,9 @@ doi:  10.1038/nbt.1614</obo:IAO_0000119>
                 <owl:someValuesFrom>
                     <owl:Class>
                         <owl:intersectionOf rdf:parseType="Collection">
-                            <rdf:Description rdf:about="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl#NMR:1000223"/>
-                            <rdf:Description rdf:about="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl#NMR:1000864"/>
-                            <rdf:Description rdf:about="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl#NMR:1400006"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/nmrCV#NMR:1000223"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/nmrCV#NMR:1000864"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/nmrCV#NMR:1400006"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000578"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000191"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/MSIO_0000194"/>

From 2cc57d0f39449e132074e98fed630741a85fb2c4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Javier=20Mill=C3=A1n=20Acosta?=
 <83466805+jmillanacosta@users.noreply.github.com>
Date: Tue, 11 Jul 2023 15:56:14 +0200
Subject: [PATCH 3/3] Removed broken imports

---
 MSIO-edit.owl | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/MSIO-edit.owl b/MSIO-edit.owl
index 918a415..e9d0a3e 100644
--- a/MSIO-edit.owl
+++ b/MSIO-edit.owl
@@ -18,11 +18,7 @@
      xmlns:msio="http://purl.obolibrary.org/obo/MSIO.owl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/msio.owl">
         <owl:imports rdf:resource="https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/nmrcv/master/nmrCV-corrected-namespace.owl"/>
-        <owl:imports rdf:resource="http://purl.obolibrary.org/obo/MSIO_PSIMS_import.owl"/>
-        <owl:imports rdf:resource="http://purl.obolibrary.org/obo/MSIO_CHMO_import.owl"/>
-        <owl:imports rdf:resource="http://purl.obolibrary.org/obo/MSIO_OBI_import.owl"/>
-        <owl:imports rdf:resource="http://purl.obolibrary.org/obo/MSIO_ChEBI_import.owl"/>
-        <owl:imports rdf:resource="http://purl.obolibrary.org/obo/MSIO_UO_import.owl"/>
+
         <dc:title xml:lang="en">Metabolomics Standards Initiative Ontology (MSIO)</dc:title>
         <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">1.0</owl:versionInfo>
         <dc:format>OWL</dc:format>