Skip to content

Commit d4ec0c3

Browse files
PaulHaxPaulHax
committed
feat(image-sets-normalization): make tag keys english
1 parent eada50c commit d4ec0c3

File tree

3 files changed

+226
-61
lines changed

3 files changed

+226
-61
lines changed

‎packages/dicom/gdcm/Tags.h‎

Lines changed: 201 additions & 36 deletions
Original file line numberDiff line numberDiff line change
@@ -20,49 +20,214 @@
2020

2121
#include <string>
2222
#include <unordered_set>
23+
#include "itkGDCMImageIO.h"
2324

24-
using Tags = std::unordered_set<std::string>;
25+
using TagKey = std::string;
26+
using TagKeys = std::unordered_set<TagKey>;
27+
using TagNames = std::unordered_map<TagKey, std::string>;
28+
using TagMap = TagNames; // TagKey -> TagValue
2529

26-
const Tags PATIENT_TAGS = {
27-
"0010|0010", // Patient's Name
28-
"0010|0020", // Patient ID
29-
"0010|0030", // Patient's Birth Date
30-
"0010|0040", // Patient's Sex
31-
"0010|1010", // Patient's Age
32-
"0010|1030", // Patient's Weight
33-
"0010|21b0", // Additional Patient's History
30+
// Tag names from https://docs.aws.amazon.com/healthimaging/latest/devguide/reference-dicom-support.html
31+
const TagNames PATIENT_TAG_NAMES = {
32+
// Patient Module Elements
33+
{"0010|0010", "Patient's Name"},
34+
{"0010|0020", "Patient ID"},
35+
// Issuer of Patient ID Macro Elements
36+
{"0010|0021", "Issuer of Patient ID"},
37+
{"0010|0024", "Issuer of Patient ID Qualifiers Sequence"},
38+
{"0010|0022", "Type of Patient ID"},
39+
{"0010|0030", "Patient's Birth Date"},
40+
{"0010|0033", "Patient's Birth Date in Alternative Calendar"},
41+
{"0010|0034", "Patient's Death Date in Alternative Calendar"},
42+
{"0010|0035", "Patient's Alternative Calendar Attribute"},
43+
{"0010|0040", "Patient's Sex"},
44+
{"0010|1100", "Referenced Patient Photo Sequence"},
45+
{"0010|0200", "Quality Control Subject"},
46+
{"0008|1120", "Referenced Patient Sequence"},
47+
{"0010|0032", "Patient's Birth Time"},
48+
{"0010|1002", "Other Patient IDs Sequence"},
49+
{"0010|1001", "Other Patient Names"},
50+
{"0010|2160", "Ethnic Group"},
51+
{"0010|4000", "Patient Comments"},
52+
{"0010|2201", "Patient Species Description"},
53+
{"0010|2202", "Patient Species Code Sequence Attribute"},
54+
{"0010|2292", "Patient Breed Description"},
55+
{"0010|2293", "Patient Breed Code Sequence"},
56+
{"0010|2294", "Breed Registration Sequence Attribute"},
57+
{"0010|0212", "Strain Description"},
58+
{"0010|0213", "Strain Nomenclature Attribute"},
59+
{"0010|0219", "Strain Code Sequence"},
60+
{"0010|0218", "Strain Additional Information Attribute"},
61+
{"0010|0216", "Strain Stock Sequence"},
62+
{"0010|0221", "Genetic Modifications Sequence Attribute"},
63+
{"0010|2297", "Responsible Person"},
64+
{"0010|2298", "Responsible Person Role Attribute"},
65+
{"0010|2299", "Responsible Organization"},
66+
{"0012|0062", "Patient Identity Removed"},
67+
{"0012|0063", "De-identification Method"},
68+
{"0012|0064", "De-identification Method Code Sequence"},
69+
// Patient Group Macro Elements
70+
{"0010|0026", "Source Patient Group Identification Sequence"},
71+
{"0010|0027", "Group of Patients Identification Sequence"},
72+
// Clinical Trial Subject Module
73+
{"0012|0010", "Clinical Trial Sponsor Name"},
74+
{"0012|0020", "Clinical Trial Protocol ID"},
75+
{"0012|0021", "Clinical Trial Protocol Name Attribute"},
76+
{"0012|0030", "Clinical Trial Site ID"},
77+
{"0012|0031", "Clinical Trial Site Name"},
78+
{"0012|0040", "Clinical Trial Subject ID"},
79+
{"0012|0042", "Clinical Trial Subject Reading ID"},
80+
{"0012|0081", "Clinical Trial Protocol Ethics Committee Name"},
81+
{"0012|0082", "Clinical Trial Protocol Ethics Committee Approval Number"},
3482
};
3583

36-
const Tags STUDY_TAGS = {
37-
"0020|000D", // Study Instance UID
38-
"0008|0020", // Study Date
39-
"0008|0030", // Study Time
40-
"0008|1030", // Study Description
41-
"0008|0050", // Accession Number
84+
const TagNames STUDY_TAG_NAMES = {
85+
// General Study Module
86+
{"0020|000d", "Study Instance UID"},
87+
{"0008|0020", "Study Date"},
88+
{"0008|0030", "Study Time"},
89+
{"0008|0090", "Referring Physician's Name"},
90+
{"0008|0096", "Referring Physician Identification Sequence"},
91+
{"0008|009c", "Consulting Physician's Name"},
92+
{"0008|009d", "Consulting Physician Identification Sequence"},
93+
{"0020|0010", "Study ID"},
94+
{"0008|0050", "Accession Number"},
95+
{"0008|0051", "Issuer of Accession Number Sequence"},
96+
{"0008|1030", "Study Description"},
97+
{"0008|1048", "Physician(s) of Record"},
98+
{"0008|1049", "Physician(s) of Record Identification Sequence"},
99+
{"0008|1060", "Name of Physician(s) Reading Study"},
100+
{"0008|1062", "Physician(s) Reading Study Identification Sequence"},
101+
{"0032|1033", "Requesting Service"},
102+
{"0032|1034", "Requesting Service Code Sequence"},
103+
{"0008|1110", "Referenced Study Sequence"},
104+
{"0008|1032", "Procedure Code Sequence"},
105+
{"0040|1012", "Reason For Performed Procedure Code Sequence"},
106+
// Patient Study Module
107+
{"0008|1080", "Admitting Diagnoses Description"},
108+
{"0008|1084", "Admitting Diagnoses Code Sequence"},
109+
{"0010|1010", "Patient's Age"},
110+
{"0010|1020", "Patient's Size"},
111+
{"0010|1030", "Patient's Weight"},
112+
{"0010|1022", "Patient's Body Mass Index"},
113+
{"0010|1023", "Measured AP Dimension"},
114+
{"0010|1024", "Measured Lateral Dimension"},
115+
{"0010|1021", "Patient's Size Code Sequence"},
116+
{"0010|2000", "Medical Alerts"},
117+
{"0010|2110", "Allergies"},
118+
{"0010|21a0", "Smoking Status"},
119+
{"0010|21c0", "Pregnancy Status"},
120+
{"0010|21d0", "Last Menstrual Date"},
121+
{"0038|0500", "Patient State"},
122+
{"0010|2180", "Occupation"},
123+
{"0010|21b0", "Additional Patient History"},
124+
{"0038|0010", "Admission ID"},
125+
{"0038|0014", "Issuer of Admission ID Sequence"},
126+
{"0032|1066", "Reason for Visit"},
127+
{"0032|1067", "Reason for Visit Code Sequence"},
128+
{"0038|0060", "Service Episode ID"},
129+
{"0038|0064", "Issuer of Service Episode ID Sequence"},
130+
{"0038|0062", "Service Episode Description"},
131+
{"0010|2203", "Patient's Sex Neutered"},
132+
// Clinical Trial Study Module
133+
{"0012|0050", "Clinical Trial Time Point ID"},
134+
{"0012|0051", "Clinical Trial Time Point Description"},
135+
{"0012|0052", "Longitudinal Temporal Offset from Event"},
136+
{"0012|0053", "Longitudinal Temporal Event Type"},
137+
{"0012|0083", "Consent for Clinical Trial Use Sequence"},
42138
};
43139

44-
const Tags SERIES_TAGS = {
45-
"0020|000e", // Series Instance UID
46-
"0008|103e", // Series Description
47-
"0008|0060", // Modality
140+
const TagNames SERIES_TAG_NAMES = {
141+
// General Series Module
142+
{"0008|0060", "Modality"},
143+
{"0020|000e", "Series Instance UID"},
144+
{"0020|0011", "Series Number"},
145+
{"0020|0060", "Laterality"},
146+
{"0008|0021", "Series Date"},
147+
{"0008|0031", "Series Time"},
148+
{"0008|1050", "Performing Physician's Name"},
149+
{"0008|1052", "Performing Physician Identification Sequence"},
150+
{"0018|1030", "Protocol Name"},
151+
{"0008|103e", "Series Description"},
152+
{"0008|103f", "Series Description Code Sequence"},
153+
{"0008|1070", "Operators' Name"},
154+
{"0008|1072", "Operator Identification Sequence"},
155+
{"0008|1111", "Referenced Performed Procedure Step Sequence"},
156+
{"0008|1250", "Related Series Sequence"},
157+
{"0018|0015", "Body Part Examined"},
158+
{"0018|5100", "Patient Position"},
159+
{"0028|0108", "Smallest Pixel Value in Series"},
160+
{"0028|0109", "Largest Pixel Value in Series"},
161+
{"0040|0275", "Request Attributes Sequence"},
162+
{"0010|2210", "Anatomical Orientation Type"},
163+
{"300a|0700", "Treatment Session UID"},
164+
// Clinical Trial Series Module
165+
{"0012|0060", "Clinical Trial Coordinating Center Name"},
166+
{"0012|0071", "Clinical Trial Series ID"},
167+
{"0012|0072", "Clinical Trial Series Description"},
168+
// General Equipment Module
169+
{"0008|0070", "Manufacturer"},
170+
{"0008|0080", "Institution Name"},
171+
{"0008|0081", "Institution Address"},
172+
{"0008|1010", "Station Name"},
173+
{"0008|1040", "Institutional Department Name"},
174+
{"0008|1041", "Institutional Department Type Code Sequence"},
175+
{"0008|1090", "Manufacturer's Model Name"},
176+
{"0018|100b", "Manufacturer's Device Class UID"},
177+
{"0018|1000", "Device Serial Number"},
178+
{"0018|1020", "Software Versions"},
179+
{"0018|1008", "Gantry ID"},
180+
{"0018|100a", "UDI Sequence"},
181+
{"0018|1002", "Device UID"},
182+
{"0018|1050", "Spatial Resolution"},
183+
{"0018|1200", "Date of Last Calibration"},
184+
{"0018|1201", "Time of Last Calibration"},
185+
{"0028|0120", "Pixel Padding Value"},
186+
// Frame of Reference Module
187+
{"0020|0052", "Frame of Reference UID"},
188+
{"0020|1040", "Position Reference Indicator"},
48189
};
49190

50-
const Tags NON_INSTANCE_TAGS = {
51-
"0010|0010", // Patient's Name
52-
"0010|0020", // Patient ID
53-
"0010|0030", // Patient's Birth Date
54-
"0010|0040", // Patient's Sex
55-
"0010|1010", // Patient's Age
56-
"0010|1030", // Patient's Weight
57-
"0010|21b0", // Additional Patient's History
58-
"0020|000D", // Study Instance UID
59-
"0008|0020", // Study Date
60-
"0008|0030", // Study Time
61-
"0008|1030", // Study Description
62-
"0008|0050", // Accession Number
63-
"0020|000e", // Series Instance UID
64-
"0008|103e", // Series Description
65-
"0008|0060", // Modality
66-
};
191+
TagMap extractAndRename(const TagMap &tags, const TagNames &keeperTags)
192+
{
193+
TagMap extracted;
194+
for (const auto &[key, name] : keeperTags)
195+
{
196+
const auto it = tags.find(key);
197+
if (it != tags.end())
198+
{
199+
extracted[name] = it->second;
200+
}
201+
}
202+
return extracted;
203+
}
204+
205+
TagMap remove(const TagMap &tags, const TagNames &removeTags)
206+
{
207+
TagMap filteredTags = tags;
208+
for (const auto &[key, name] : removeTags)
209+
{
210+
filteredTags.erase(key);
211+
}
212+
return filteredTags;
213+
}
214+
215+
TagMap relabel(const TagMap &tags)
216+
{
217+
TagMap relabelTags;
218+
for (const auto &[key, value] : tags)
219+
{
220+
std::string name = key;
221+
if (itk::GDCMImageIO::GetLabelFromTag(key, name))
222+
{
223+
relabelTags[name] = value;
224+
}
225+
else
226+
{
227+
relabelTags[key] = value;
228+
}
229+
}
230+
return relabelTags;
231+
}
67232

68233
#endif // TAGS_H

0 commit comments

Comments
 (0)