Update environment

Author: juliohm

Manifest.toml

@@ -329,9 +329,9 @@ weakdeps = ["SparseArrays"]
     ChainRulesCoreSparseArraysExt = "SparseArrays"
 
 [[deps.ChunkCodecCore]]
-git-tree-sha1 = "1667d15ab0285b4f8f4cfb8ea10ba2e48c6e32b4"
+git-tree-sha1 = "7a64bd16a550e3e7fbb3fee6bf52fe1937206437"
 uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1"
-version = "0.5.0"
+version = "0.5.1"
 
 [[deps.ChunkCodecLibBrotli]]
 deps = ["ChunkCodecCore", "brotli_jll"]
@@ -400,9 +400,9 @@ version = "0.4.1"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
-git-tree-sha1 = "403f2d8e209681fcbd9468a8514efff3ea08452e"
+git-tree-sha1 = "a656525c8b46aa6a1c76891552ed5381bb32ae7b"
 uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-version = "3.29.0"
+version = "3.30.0"
 
 [[deps.ColorTypes]]
 deps = ["FixedPointNumbers", "Random"]
@@ -674,9 +674,9 @@ version = "1.15.1"
 
 [[deps.DifferentiationInterface]]
 deps = ["ADTypes", "LinearAlgebra"]
-git-tree-sha1 = "210933c93f39f832d92f9efbbe69a49c453db36d"
+git-tree-sha1 = "c092fd1dd0d94e609cd0d29e13897b2825c804bb"
 uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
-version = "0.7.1"
+version = "0.7.2"
 
     [deps.DifferentiationInterface.extensions]
     DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
@@ -724,9 +724,9 @@ version = "0.7.1"
 
 [[deps.DiskArrays]]
 deps = ["ConstructionBase", "LRUCache", "Mmap", "OffsetArrays"]
-git-tree-sha1 = "9ec4e6e7d6ef5599340f48bfbfeca4e730162b31"
+git-tree-sha1 = "16d93ff95ecc421463eaefd694e6746bb1c0919e"
 uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
-version = "0.4.13"
+version = "0.4.14"
 
 [[deps.Distances]]
 deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
@@ -1040,9 +1040,9 @@ version = "0.3.0"
 
 [[deps.GeoStats]]
 deps = ["CategoricalArrays", "Chain", "CoDa", "CoordGridTransforms", "CoordRefSystems", "DataScienceTraits", "Dates", "DensityRatioEstimation", "Distances", "GeoStatsBase", "GeoStatsFunctions", "GeoStatsModels", "GeoStatsProcesses", "GeoStatsTransforms", "GeoStatsValidation", "GeoTables", "LossFunctions", "Meshes", "Reexport", "Rotations", "Statistics", "StatsLearnModels", "TableTransforms", "Tables", "Unitful"]
-git-tree-sha1 = "8d99dc6f7df40dd39634395e1aa1645cf665a61a"
+git-tree-sha1 = "c9f7bb135f61637314b86879207c231dae62e68c"
 uuid = "dcc97b0b-8ce5-5539-9008-bb190f959ef6"
-version = "0.80.1"
+version = "0.81.0"
 
 [[deps.GeoStatsBase]]
 deps = ["CategoricalArrays", "ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "Distances", "Distributions", "GeoTables", "LinearAlgebra", "Meshes", "Optim", "Rotations", "StaticArrays", "StatsBase", "Tables", "TypedTables", "Unitful"]
@@ -1056,25 +1056,25 @@ weakdeps = ["Makie"]
 
 [[deps.GeoStatsFunctions]]
 deps = ["Bessels", "CategoricalArrays", "DataScienceTraits", "Distances", "GeoTables", "LinearAlgebra", "Meshes", "NearestNeighbors", "OhMyThreads", "Optim", "PrecompileTools", "Random", "Setfield", "StaticArrays", "Statistics", "TableTransforms", "Tables", "Unitful"]
-git-tree-sha1 = "633a58e8ddd0d80d66bd71569653f67fc2d23cc3"
+git-tree-sha1 = "059787c499389f4c2817234bdd3f81619abe15bb"
 uuid = "6771c435-bc22-4842-b0c3-41852a255103"
-version = "0.11.7"
+version = "0.11.8"
 weakdeps = ["Makie"]
 
     [deps.GeoStatsFunctions.extensions]
     GeoStatsFunctionsMakieExt = "Makie"
 
 [[deps.GeoStatsModels]]
 deps = ["Combinatorics", "CoordRefSystems", "Distances", "Distributions", "GeoStatsFunctions", "GeoTables", "LinearAlgebra", "Meshes", "Statistics", "Tables", "Unitful"]
-git-tree-sha1 = "c394bfe66bf9eae34d3d7ffff5e7cd9494a767e9"
+git-tree-sha1 = "d28c21caaf9a4857ce35a5c6003fca69e87124f6"
 uuid = "ad987403-13c5-47b5-afee-0a48f6ac4f12"
-version = "0.11.4"
+version = "0.12.2"
 
 [[deps.GeoStatsProcesses]]
 deps = ["Bessels", "CpuId", "Distances", "Distributed", "Distributions", "FFTW", "GeoStatsFunctions", "GeoStatsModels", "GeoTables", "LinearAlgebra", "Meshes", "ProgressMeter", "Random", "Statistics", "TableTransforms", "Tables", "Unitful"]
-git-tree-sha1 = "7633cc6ff06d20255d51644e34c19d77f07f5bad"
+git-tree-sha1 = "ca803fbdf4f8a70ea368840a50b511b53f742037"
 uuid = "aa102bde-5a27-4b0c-b2c1-e7a7dcc4c3e7"
-version = "0.11.10"
+version = "0.11.11"
 
     [deps.GeoStatsProcesses.extensions]
     GeoStatsProcessesImageQuiltingExt = "ImageQuilting"
@@ -1088,15 +1088,15 @@ version = "0.11.10"
 
 [[deps.GeoStatsTransforms]]
 deps = ["ArnoldiMethod", "CategoricalArrays", "Clustering", "ColumnSelectors", "Combinatorics", "DataScienceTraits", "Distances", "GeoStatsFunctions", "GeoStatsModels", "GeoTables", "LinearAlgebra", "Meshes", "OhMyThreads", "PrecompileTools", "Random", "SparseArrays", "Statistics", "TableDistances", "TableTransforms", "Tables", "TiledIteration", "Unitful"]
-git-tree-sha1 = "a4714b9683a01ac29110394bc2ecae7ac6a42947"
+git-tree-sha1 = "8b739d9415a9ed2977cf4c8dceb78fae0f89bcc6"
 uuid = "725d9659-360f-4996-9c94-5f19c7e4a8a6"
-version = "0.12.11"
+version = "0.12.12"
 
 [[deps.GeoStatsValidation]]
 deps = ["ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "GeoStatsBase", "GeoStatsModels", "GeoStatsTransforms", "GeoTables", "LossFunctions", "Meshes", "StatsLearnModels"]
-git-tree-sha1 = "2843a56ee398aa594e111f33c2ff48eb5653842e"
+git-tree-sha1 = "64901134f4a9441e6e3777093bcdd53d05d09327"
 uuid = "36f43c0d-3673-45fc-9557-6860e708e7aa"
-version = "0.3.30"
+version = "0.3.31"
 
 [[deps.GeoTIFF]]
 deps = ["ColorTypes", "FixedPointNumbers", "MappedArrays", "StaticArrays", "TiffImages"]
@@ -1116,10 +1116,14 @@ weakdeps = ["Makie", "TableTransforms"]
     GeoTablesTableTransformsExt = "TableTransforms"
 
 [[deps.GeometryBasics]]
-deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "PrecompileTools", "Random", "StaticArrays"]
-git-tree-sha1 = "2670cf32dcf0229c9893b895a9afe725edb23545"
+deps = ["EarCut_jll", "Extents", "IterTools", "LinearAlgebra", "PrecompileTools", "Random", "StaticArrays"]
+git-tree-sha1 = "1f5a80f4ed9f5a4aada88fc2db456e637676414b"
 uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
-version = "0.5.9"
+version = "0.5.10"
+weakdeps = ["GeoInterface"]
+
+    [deps.GeometryBasics.extensions]
+    GeometryBasicsGeoInterfaceExt = "GeoInterface"
 
 [[deps.GettextRuntime_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"]
@@ -1170,9 +1174,9 @@ version = "1.5.13"
 
 [[deps.HDF4_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll", "libaec_jll"]
-git-tree-sha1 = "b4936dcc929748932ae40ebb3762255654602bc6"
+git-tree-sha1 = "ea9eff9cfef5f45b771096e5c2de3de0eab937c3"
 uuid = "818ab7a1-5177-5f44-ba99-6e845030c6cb"
-version = "4.3.1+0"
+version = "4.3.2+0"
 
 [[deps.HDF5_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
@@ -1431,15 +1435,15 @@ version = "1.21.3+0"
 
 [[deps.KernelDensity]]
 deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"]
-git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1"
+git-tree-sha1 = "ba51324b894edaf1df3ab16e2cc6bc3280a2f1a7"
 uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
-version = "0.6.9"
+version = "0.6.10"
 
 [[deps.LAME_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd"
+git-tree-sha1 = "059aabebaa7c82ccb853dd4a0ee9d17796f7e1bc"
 uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d"
-version = "3.100.2+0"
+version = "3.100.3+0"
 
 [[deps.LERC_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1730,9 +1734,9 @@ version = "0.3.2"
 
 [[deps.Meshes]]
 deps = ["Bessels", "CircularArrays", "Colorfy", "CoordRefSystems", "DelaunayTriangulation", "Distances", "LinearAlgebra", "NearestNeighbors", "Random", "Rotations", "ScopedValues", "SparseArrays", "StaticArrays", "StatsBase", "TiledIteration", "TransformsBase", "Unitful"]
-git-tree-sha1 = "8eda085dfd1d416f8edd32999961263a5f27c8e8"
+git-tree-sha1 = "7a509c69a5f761307df9befac0b5e2e4552aa435"
 uuid = "eacbb407-ea5a-433e-ab97-5258b1ca43fa"
-version = "0.53.28"
+version = "0.53.30"
 weakdeps = ["Makie"]
 
     [deps.Meshes.extensions]
@@ -1795,9 +1799,9 @@ version = "0.14.3"
 
 [[deps.NearestNeighbors]]
 deps = ["Distances", "StaticArrays"]
-git-tree-sha1 = "8a3271d8309285f4db73b4f662b1b290c715e85e"
+git-tree-sha1 = "ca7e18198a166a1f3eb92a3650d53d94ed8ca8a1"
 uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
-version = "0.4.21"
+version = "0.4.22"
 
 [[deps.NelderMead]]
 git-tree-sha1 = "25abc2f9b1c752e69229f37909461befa7c1f85d"
@@ -1835,10 +1839,10 @@ weakdeps = ["Adapt"]
     OffsetArraysAdaptExt = "Adapt"
 
 [[deps.Ogg_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f"
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "b6aa4566bb7ae78498a5e68943863fa8b5231b59"
 uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051"
-version = "1.3.5+1"
+version = "1.3.6+0"
 
 [[deps.OhMyThreads]]
 deps = ["BangBang", "ChunkSplitters", "ScopedValues", "StableTasks", "TaskLocalValues"]
@@ -1922,9 +1926,9 @@ version = "1.13.2"
 
 [[deps.Opus_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575"
+git-tree-sha1 = "c392fc5dd032381919e3b22dd32d6443760ce7ea"
 uuid = "91d4177d-7536-5919-b921-800302f37372"
-version = "1.3.3+0"
+version = "1.5.2+0"
 
 [[deps.OrderedCollections]]
 git-tree-sha1 = "05868e21324cede2207c6f0f466b4bfef6d5e7ee"
@@ -1968,9 +1972,9 @@ version = "0.5.12"
 
 [[deps.PairPlots]]
 deps = ["Contour", "Distributions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "Makie", "Measures", "Missings", "NamedTupleTools", "OrderedCollections", "PolygonOps", "PrecompileTools", "Printf", "Requires", "StaticArrays", "Statistics", "StatsBase", "TableOperations", "Tables"]
-git-tree-sha1 = "ab5f2998f984de86c929b85f406112780ecb9a94"
+git-tree-sha1 = "8f0766f15134453e33e54db20c973f28a41600cd"
 uuid = "43a3c2be-4208-490b-832a-a21dcd55d7da"
-version = "3.0.1"
+version = "3.0.2"
 
     [deps.PairPlots.extensions]
     MCMCChainsExt = "MCMCChains"
@@ -2555,9 +2559,9 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
 version = "1.10.0"
 
 [[deps.TaskLocalValues]]
-git-tree-sha1 = "d155450e6dff2a8bc2fcb81dcb194bd98b0aeb46"
+git-tree-sha1 = "67e469338d9ce74fc578f7db1736a74d93a49eb8"
 uuid = "ed4db957-447d-4319-bfb6-7fa9ae7ecf34"
-version = "0.1.2"
+version = "0.1.3"
 
 [[deps.TensorCore]]
 deps = ["LinearAlgebra"]
@@ -2859,9 +2863,9 @@ version = "5.11.0+0"
 
 [[deps.libfdk_aac_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38"
+git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df"
 uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
-version = "2.0.3+0"
+version = "2.0.4+0"
 
 [[deps.libgeotiff_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LibCURL_jll", "Libdl", "Libtiff_jll", "PROJ_jll", "Zlib_jll"]
@@ -2871,9 +2875,9 @@ version = "100.702.400+0"
 
 [[deps.libpng_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
-git-tree-sha1 = "cd155272a3738da6db765745b89e466fa64d0830"
+git-tree-sha1 = "07b6a107d926093898e82b3b1db657ebe33134ec"
 uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
-version = "1.6.49+0"
+version = "1.6.50+0"
 
 [[deps.libsixel_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]
@@ -2882,16 +2886,16 @@ uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
 version = "1.10.5+0"
 
 [[deps.libvorbis_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
-git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"]
+git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5"
 uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
-version = "1.3.7+2"
+version = "1.3.8+0"
 
 [[deps.libwebp_jll]]
 deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"]
-git-tree-sha1 = "d2408cac540942921e7bd77272c32e58c33d8a77"
+git-tree-sha1 = "4e4282c4d846e11dce56d74fa8040130b7a95cb3"
 uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2"
-version = "1.5.0+0"
+version = "1.6.0+0"
 
 [[deps.libzip_jll]]
 deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"]

preface.qmd

@@ -115,14 +115,14 @@ using Pkg
 pkg"activate @GDSJL"
 
 # install framework
-pkg"add GeoStats@0.80.1"
+pkg"add GeoStats@0.81.0"
 
 # install IO module
 pkg"add GeoIO@1.20.6"
 
 # install viz modules
 pkg"add CairoMakie@0.13.10"
-pkg"add PairPlots@3.0.1"
+pkg"add PairPlots@3.0.2"
 
 # install other modules
 pkg"add DataFrames@1.7.0"