Update environment

Author: juliohm

Manifest.toml

@@ -74,14 +74,18 @@ version = "0.4.1"
 
 [[deps.ArchGDAL]]
 deps = ["CEnum", "ColorTypes", "Dates", "DiskArrays", "Extents", "GDAL", "GeoFormatTypes", "GeoInterface", "GeoInterfaceMakie", "GeoInterfaceRecipes", "ImageCore", "Tables"]
-git-tree-sha1 = "0504a357f95f37497b69bf282a137410f6be3b9c"
+git-tree-sha1 = "caa7b70e9d3e21507645d346eed98d513bbd9d64"
 uuid = "c9ce4bd3-c3d5-55b8-8973-c0e20141b8c3"
-version = "0.10.4"
-weakdeps = ["Makie"]
+version = "0.10.5"
 
     [deps.ArchGDAL.extensions]
+    ArchGDALJLD2Ext = "JLD2"
     ArchGDALMakieExt = "Makie"
 
+    [deps.ArchGDAL.weakdeps]
+    JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
+    Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
+
 [[deps.ArgCheck]]
 git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4"
 uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197"
@@ -99,15 +103,16 @@ version = "0.4.0"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra"]
-git-tree-sha1 = "3640d077b6dafd64ceb8fd5c1ec76f7ca53bcf76"
+git-tree-sha1 = "d60a1922358aa203019b7857a2c8c37329b8736c"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.16.0"
+version = "7.17.0"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
     ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices"
     ArrayInterfaceCUDAExt = "CUDA"
     ArrayInterfaceCUDSSExt = "CUDSS"
+    ArrayInterfaceChainRulesCoreExt = "ChainRulesCore"
     ArrayInterfaceChainRulesExt = "ChainRules"
     ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore"
     ArrayInterfaceReverseDiffExt = "ReverseDiff"
@@ -121,6 +126,7 @@ version = "7.16.0"
     CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
     CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e"
     ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2"
+    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
     GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527"
     ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
     SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
@@ -241,9 +247,9 @@ version = "0.10.15"
 
 [[deps.Cairo]]
 deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"]
-git-tree-sha1 = "7b6ad8c35f4bc3bca8eb78127c8b99719506a5fb"
+git-tree-sha1 = "71aa551c5c33f1a4415867fe06b7844faadb0ae9"
 uuid = "159f3aea-2a34-519c-b102-8c37f9878175"
-version = "1.1.0"
+version = "1.1.1"
 
 [[deps.CairoMakie]]
 deps = ["CRC32c", "Cairo", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"]
@@ -278,9 +284,9 @@ version = "0.6.0"
 
 [[deps.ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
-git-tree-sha1 = "be227d253d132a6d57f9ccf5f67c0fb6488afd87"
+git-tree-sha1 = "9e2503a7ac8df599cbf422af95729b2d263220f6"
 uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
-version = "1.71.0"
+version = "1.72.0"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
@@ -341,9 +347,9 @@ version = "0.4.0"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
-git-tree-sha1 = "13951eb68769ad1cd460cdb2e64e5e95f1bf123d"
+git-tree-sha1 = "c785dfb1b3bfddd1da557e861b919819b82bbe5b"
 uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-version = "3.27.0"
+version = "3.27.1"
 
 [[deps.ColorTypes]]
 deps = ["FixedPointNumbers", "Random"]
@@ -448,9 +454,9 @@ version = "0.6.3"
 
 [[deps.CoordRefSystems]]
 deps = ["Random", "Rotations", "StaticArrays", "Unitful", "Zygote"]
-git-tree-sha1 = "a0993a9ba4c142c2681c3b54f28ee6d9ac9426bb"
+git-tree-sha1 = "96e9c8544d70af2ddc5c5846472689bd05d1469e"
 uuid = "b46f11dc-f210-4604-bfba-323c1ec968cb"
-version = "0.15.5"
+version = "0.15.7"
 
 [[deps.CpuId]]
 deps = ["Markdown"]
@@ -579,9 +585,9 @@ version = "1.2.5"
 
 [[deps.Dictionaries]]
 deps = ["Indexing", "Random", "Serialization"]
-git-tree-sha1 = "35b66b6744b2d92c778afd3a88d2571875664a2a"
+git-tree-sha1 = "61ab242274c0d44412d8eab38942a49aa46de9d0"
 uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4"
-version = "0.4.2"
+version = "0.4.3"
 
 [[deps.DiffResults]]
 deps = ["StaticArraysCore"]
@@ -697,9 +703,9 @@ version = "0.1.0"
 
 [[deps.FileIO]]
 deps = ["Pkg", "Requires", "UUIDs"]
-git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9"
+git-tree-sha1 = "91e0e5c68d02bcdaae76d3c8ceb4361e8f28d2e9"
 uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
-version = "1.16.4"
+version = "1.16.5"
 
 [[deps.FilePaths]]
 deps = ["FilePathsBase", "MacroTools", "Reexport", "Requires"]
@@ -771,9 +777,9 @@ version = "1.3.7"
 
 [[deps.ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"]
-git-tree-sha1 = "a9ce73d3c827adab2d70bf168aaece8cce196898"
+git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853"
 uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "0.10.37"
+version = "0.10.38"
 weakdeps = ["StaticArrays"]
 
     [deps.ForwardDiff.extensions]
@@ -793,9 +799,9 @@ version = "2.13.2+0"
 
 [[deps.FreeTypeAbstraction]]
 deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"]
-git-tree-sha1 = "84dfe824bd6fdf2a5d73bb187ff31b5549b2a79c"
+git-tree-sha1 = "77e2b094e61d939f9626181ab23d0b76e78f9fd3"
 uuid = "663a7486-cb36-511b-a19d-713bb74d65c9"
-version = "0.10.4"
+version = "0.10.5"
 
 [[deps.FriBidi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -868,9 +874,9 @@ version = "0.4.2"
 
 [[deps.GeoIO]]
 deps = ["ArchGDAL", "CSV", "Colors", "CommonDataModel", "CoordRefSystems", "FileIO", "FixedPointNumbers", "Format", "GRIBDatasets", "GeoFormatTypes", "GeoInterface", "GeoJSON", "GeoParquet", "GeoTables", "GslibIO", "ImageIO", "MappedArrays", "Meshes", "NCDatasets", "PlyIO", "PrecompileTools", "PrettyTables", "ReadVTK", "Shapefile", "StaticArrays", "Tables", "TiffImages", "TransformsBase", "Unitful", "VTKBase", "WriteVTK"]
-git-tree-sha1 = "b54d4714fe27a0a2ddedf2d1fd80f63313ded488"
+git-tree-sha1 = "c0b095e546c383b62d50ee5b64d50cb1a2eb3cab"
 uuid = "f5a160d5-e41d-4189-8b61-d57781c419e3"
-version = "1.19.0"
+version = "1.19.2"
 
 [[deps.GeoInterface]]
 deps = ["Extents", "GeoFormatTypes"]
@@ -908,9 +914,9 @@ version = "0.2.1"
 
 [[deps.GeoStats]]
 deps = ["CategoricalArrays", "Chain", "CoDa", "CoordRefSystems", "DataScienceTraits", "Dates", "DensityRatioEstimation", "Distances", "GeoStatsBase", "GeoStatsFunctions", "GeoStatsModels", "GeoStatsProcesses", "GeoStatsTransforms", "GeoStatsValidation", "GeoTables", "LossFunctions", "Meshes", "Reexport", "Rotations", "Statistics", "StatsLearnModels", "TableTransforms", "Tables", "Unitful"]
-git-tree-sha1 = "b8bba9882c98b40224b308c20f39f444d3999e34"
+git-tree-sha1 = "f385d46c122dfb9a25d9031484ae3238e00a1f54"
 uuid = "dcc97b0b-8ce5-5539-9008-bb190f959ef6"
-version = "0.71.2"
+version = "0.71.3"
 
 [[deps.GeoStatsBase]]
 deps = ["CategoricalArrays", "ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "Distances", "Distributions", "GeoTables", "LinearAlgebra", "Meshes", "Optim", "Rotations", "StaticArrays", "StatsBase", "Tables", "TypedTables", "Unitful"]
@@ -956,15 +962,15 @@ version = "0.8.3"
 
 [[deps.GeoStatsTransforms]]
 deps = ["ArnoldiMethod", "CategoricalArrays", "Clustering", "ColumnSelectors", "Combinatorics", "DataScienceTraits", "Distances", "GeoStatsModels", "GeoStatsProcesses", "GeoTables", "LinearAlgebra", "Meshes", "OhMyThreads", "PrecompileTools", "Random", "SparseArrays", "Statistics", "TableDistances", "TableTransforms", "Tables", "TiledIteration", "Unitful"]
-git-tree-sha1 = "53e2c112c398b0589c42e515e5d143ba6f59ad3e"
+git-tree-sha1 = "89a266f3b0f3248fc4fb278de93dad20a7712355"
 uuid = "725d9659-360f-4996-9c94-5f19c7e4a8a6"
-version = "0.8.7"
+version = "0.9.0"
 
 [[deps.GeoStatsValidation]]
 deps = ["ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "GeoStatsBase", "GeoStatsModels", "GeoStatsTransforms", "GeoTables", "LossFunctions", "Meshes", "StatsLearnModels"]
-git-tree-sha1 = "4e380098416ee7040c5df3c5b1290bcde3ba83e9"
+git-tree-sha1 = "d7e221c0e5d171cd36335778e09c77fa2dffb524"
 uuid = "36f43c0d-3673-45fc-9557-6860e708e7aa"
-version = "0.3.18"
+version = "0.3.19"
 
 [[deps.GeoTables]]
 deps = ["CategoricalArrays", "Colorfy", "ColumnSelectors", "CoordRefSystems", "DataAPI", "DataScienceTraits", "Dates", "Distributions", "IteratorInterfaceExtensions", "Meshes", "PrettyTables", "Random", "Statistics", "TableTraits", "Tables", "TransformsBase", "Unitful"]
@@ -1061,9 +1067,9 @@ version = "2.11.2+1"
 
 [[deps.HypergeometricFunctions]]
 deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
-git-tree-sha1 = "7c4195be1649ae622304031ed46a2f4df989f1eb"
+git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9"
 uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
-version = "0.3.24"
+version = "0.3.25"
 
 [[deps.ICU_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1096,9 +1102,9 @@ version = "0.1.7"
 
 [[deps.ImageCore]]
 deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"]
-git-tree-sha1 = "b219503865f42a12ad20ea67082e0fdb69b73ad9"
+git-tree-sha1 = "8c193230235bbcee22c8066b0374f63b5683c2d3"
 uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534"
-version = "0.10.3"
+version = "0.10.5"
 
 [[deps.ImageIO]]
 deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs", "WebP"]
@@ -1580,9 +1586,9 @@ version = "0.3.2"
 
 [[deps.Meshes]]
 deps = ["Bessels", "CircularArrays", "Colorfy", "CoordRefSystems", "DelaunayTriangulation", "Distances", "LinearAlgebra", "NearestNeighbors", "Random", "Rotations", "ScopedValues", "SparseArrays", "StaticArrays", "StatsBase", "TiledIteration", "TransformsBase", "Unitful"]
-git-tree-sha1 = "7595d05b4afb23d7a5a803d3dbd7aeee7784b639"
+git-tree-sha1 = "dcd315196c9e04148fde1039a63c1c3c1ece87d0"
 uuid = "eacbb407-ea5a-433e-ab97-5258b1ca43fa"
-version = "0.52.2"
+version = "0.52.3"
 weakdeps = ["Makie"]
 
     [deps.Meshes.extensions]
@@ -1645,9 +1651,9 @@ version = "0.14.3"
 
 [[deps.NearestNeighbors]]
 deps = ["Distances", "StaticArrays"]
-git-tree-sha1 = "3cebfc94a0754cc329ebc3bab1e6c89621e791ad"
+git-tree-sha1 = "8a3271d8309285f4db73b4f662b1b290c715e85e"
 uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
-version = "0.4.20"
+version = "0.4.21"
 
 [[deps.NelderMead]]
 git-tree-sha1 = "25abc2f9b1c752e69229f37909461befa7c1f85d"
@@ -1750,9 +1756,9 @@ version = "0.5.5+0"
 
 [[deps.Optim]]
 deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
-git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89"
+git-tree-sha1 = "ab7edad78cdef22099f43c54ef77ac63c2c9cc64"
 uuid = "429524aa-4258-5aef-a3af-852621145aeb"
-version = "1.9.4"
+version = "1.10.0"
 
     [deps.Optim.extensions]
     OptimMOIExt = "MathOptInterface"
@@ -2052,9 +2058,9 @@ version = "0.7.0"
 
 [[deps.SIMD]]
 deps = ["PrecompileTools"]
-git-tree-sha1 = "98ca7c29edd6fc79cd74c61accb7010a4e7aee33"
+git-tree-sha1 = "52af86e35dd1b177d051b12681e1c581f53c281b"
 uuid = "fdea26ae-647d-5447-a871-4b548cad5224"
-version = "3.6.0"
+version = "3.7.0"
 
 [[deps.SQLite_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
@@ -2617,9 +2623,9 @@ version = "1.5.6+1"
 
 [[deps.Zygote]]
 deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "f816633be6dc5c0ed9ffedda157ecfda0b3b6a69"
+git-tree-sha1 = "c7dc3148a64d1cd3768c29b3db5972d1c302661b"
 uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
-version = "0.6.72"
+version = "0.6.73"
 
     [deps.Zygote.extensions]
     ZygoteColorsExt = "Colors"

preface.qmd

@@ -115,10 +115,10 @@ using Pkg
 pkg"activate @GDSJL"
 
 # install framework
-pkg"add GeoStats@0.71.2"
+pkg"add GeoStats@0.71.3"
 
 # install IO module
-pkg"add GeoIO@1.19.0"
+pkg"add GeoIO@1.19.2"
 
 # install viz modules
 pkg"add CairoMakie@0.12.2"