Skip to content

Commit 7bc254d

Browse files
committed
review
1 parent 225ba55 commit 7bc254d

File tree

1 file changed

+9
-13
lines changed

1 file changed

+9
-13
lines changed

petab/v2/problem.py

Lines changed: 9 additions & 13 deletions
Original file line numberDiff line numberDiff line change
@@ -420,10 +420,9 @@ def condition_df(self, value: pd.DataFrame):
420420
@property
421421
def experiment_df(self) -> pd.DataFrame | None:
422422
"""Experiment table as DataFrame."""
423-
experiments = self.experiments
424423
return (
425424
core.ExperimentTable(experiments=experiments).to_df()
426-
if experiments
425+
if (experiments := self.experiments)
427426
else None
428427
)
429428

@@ -933,7 +932,9 @@ def add_condition(
933932
934933
Arguments:
935934
id_: The condition id
936-
name: The condition name
935+
name: The condition name. If given, this will be added to the
936+
last mapping table. If no mapping table exists,
937+
a new mapping table will be created.
937938
kwargs: Entities to be added to the condition table in the form
938939
`target_id=target_value`.
939940
"""
@@ -950,14 +951,7 @@ def add_condition(
950951
core.Condition(id=id_, changes=changes)
951952
)
952953
if name is not None:
953-
if not self.mapping_tables:
954-
self.mapping_tables.append(core.MappingTable(mappings=[]))
955-
self.mapping_tables[-1].mappings.append(
956-
core.Mapping(
957-
petab_id=id_,
958-
name=name,
959-
)
960-
)
954+
self.add_mapping(petab_id=id_, name=name)
961955

962956
def add_observable(
963957
self,
@@ -1110,7 +1104,9 @@ def add_measurement(
11101104
)
11111105
)
11121106

1113-
def add_mapping(self, petab_id: str, model_id: str, name: str = None):
1107+
def add_mapping(
1108+
self, petab_id: str, model_id: str = None, name: str = None
1109+
):
11141110
"""Add a mapping table entry to the problem.
11151111
11161112
If there are more than one mapping tables, the mapping
@@ -1119,6 +1115,7 @@ def add_mapping(self, petab_id: str, model_id: str, name: str = None):
11191115
Arguments:
11201116
petab_id: The new PEtab-compatible ID mapping to `model_id`
11211117
model_id: The ID of some entity in the model
1118+
name: A name (any string) for the entity referenced by `petab_id`.
11221119
"""
11231120
if not self.mapping_tables:
11241121
self.mapping_tables.append(core.MappingTable(mappings=[]))
@@ -1262,7 +1259,6 @@ def model_dump(self, **kwargs) -> dict[str, Any]:
12621259
if table_list
12631260
else []
12641261
)
1265-
12661262
return res
12671263

12681264

0 commit comments

Comments
 (0)