Add Avro compression (apache#1976)

# Rationale for this change

PyIceberg did not compress the Avro. This will make gzip/deflate the
same as in Java.

# Are these changes tested?

Existing round-trip tests with FastAvro and Spark. Some tests are
extended to both write compressed and uncompressed data.

# Are there any user-facing changes?

Smaller and faster manifest files :)

<!-- In the case of user-facing changes, please add the changelog label.
-->

Author: Fokko

pyiceberg/avro/codecs/__init__.py

@@ -26,18 +26,27 @@
 
 from __future__ import annotations
 
-from typing import Dict, Optional, Type
+from typing import Dict, Literal, Optional, Type
+
+from typing_extensions import TypeAlias
 
 from pyiceberg.avro.codecs.bzip2 import BZip2Codec
 from pyiceberg.avro.codecs.codec import Codec
 from pyiceberg.avro.codecs.deflate import DeflateCodec
 from pyiceberg.avro.codecs.snappy_codec import SnappyCodec
 from pyiceberg.avro.codecs.zstandard_codec import ZStandardCodec
 
-KNOWN_CODECS: Dict[str, Optional[Type[Codec]]] = {
+AvroCompressionCodec: TypeAlias = Literal["null", "bzip2", "snappy", "zstandard", "deflate"]
+
+AVRO_CODEC_KEY = "avro.codec"
+
+KNOWN_CODECS: Dict[AvroCompressionCodec, Optional[Type[Codec]]] = {
     "null": None,
     "bzip2": BZip2Codec,
     "snappy": SnappyCodec,
     "zstandard": ZStandardCodec,
     "deflate": DeflateCodec,
 }
+
+# Map to convert the naming from Iceberg to Avro
+CODEC_MAPPING_ICEBERG_TO_AVRO: Dict[str, str] = {"gzip": "deflate", "zstd": "zstandard"}

pyiceberg/avro/file.py

@@ -35,7 +35,7 @@
     TypeVar,
 )
 
-from pyiceberg.avro.codecs import KNOWN_CODECS
+from pyiceberg.avro.codecs import AVRO_CODEC_KEY, CODEC_MAPPING_ICEBERG_TO_AVRO, KNOWN_CODECS
 from pyiceberg.avro.codecs.codec import Codec
 from pyiceberg.avro.decoder import BinaryDecoder, new_decoder
 from pyiceberg.avro.encoder import BinaryEncoder
@@ -69,7 +69,6 @@
     NestedField(field_id=300, name="sync", field_type=FixedType(length=SYNC_SIZE), required=True),
 )
 
-_CODEC_KEY = "avro.codec"
 _SCHEMA_KEY = "avro.schema"
 
 
@@ -92,11 +91,13 @@ def compression_codec(self) -> Optional[Type[Codec]]:
         In the case of a null codec, we return a None indicating that we
         don't need to compress/decompress.
         """
-        codec_name = self.meta.get(_CODEC_KEY, "null")
+        from pyiceberg.table import TableProperties
+
+        codec_name = self.meta.get(AVRO_CODEC_KEY, TableProperties.WRITE_AVRO_COMPRESSION_DEFAULT)
         if codec_name not in KNOWN_CODECS:
             raise ValueError(f"Unsupported codec: {codec_name}")
 
-        return KNOWN_CODECS[codec_name]
+        return KNOWN_CODECS[codec_name]  # type: ignore
 
     def get_schema(self) -> Schema:
         if _SCHEMA_KEY in self.meta:
@@ -276,11 +277,36 @@ def __exit__(
         self.output_stream.close()
 
     def _write_header(self) -> None:
+        from pyiceberg.table import TableProperties
+
+        codec_name = self.metadata.get(AVRO_CODEC_KEY, TableProperties.WRITE_AVRO_COMPRESSION_DEFAULT)
+        if avro_codec_name := CODEC_MAPPING_ICEBERG_TO_AVRO.get(codec_name):
+            codec_name = avro_codec_name
+
         json_schema = json.dumps(AvroSchemaConversion().iceberg_to_avro(self.file_schema, schema_name=self.schema_name))
-        meta = {**self.metadata, _SCHEMA_KEY: json_schema, _CODEC_KEY: "null"}
+
+        meta = {**self.metadata, _SCHEMA_KEY: json_schema, AVRO_CODEC_KEY: codec_name}
         header = AvroFileHeader(MAGIC, meta, self.sync_bytes)
         construct_writer(META_SCHEMA).write(self.encoder, header)
 
+    def compression_codec(self) -> Optional[Type[Codec]]:
+        """Get the file's compression codec algorithm from the file's metadata.
+
+        In the case of a null codec, we return a None indicating that we
+        don't need to compress/decompress.
+        """
+        from pyiceberg.table import TableProperties
+
+        codec_name = self.metadata.get(AVRO_CODEC_KEY, TableProperties.WRITE_AVRO_COMPRESSION_DEFAULT)
+
+        if avro_codec_name := CODEC_MAPPING_ICEBERG_TO_AVRO.get(codec_name):
+            codec_name = avro_codec_name
+
+        if codec_name not in KNOWN_CODECS:
+            raise ValueError(f"Unsupported codec: {codec_name}")
+
+        return KNOWN_CODECS[codec_name]  # type: ignore
+
     def write_block(self, objects: List[D]) -> None:
         in_memory = io.BytesIO()
         block_content_encoder = BinaryEncoder(output_stream=in_memory)
@@ -289,6 +315,13 @@ def write_block(self, objects: List[D]) -> None:
         block_content = in_memory.getvalue()
 
         self.encoder.write_int(len(objects))
-        self.encoder.write_int(len(block_content))
-        self.encoder.write(block_content)
+
+        if codec := self.compression_codec():
+            content, content_length = codec.compress(block_content)
+            self.encoder.write_int(content_length)
+            self.encoder.write(content)
+        else:
+            self.encoder.write_int(len(block_content))
+            self.encoder.write(block_content)
+
         self.encoder.write(self.sync_bytes)

pyiceberg/manifest.py

@@ -37,6 +37,7 @@
 from cachetools.keys import hashkey
 from pydantic_core import to_json
 
+from pyiceberg.avro.codecs import AVRO_CODEC_KEY, AvroCompressionCodec
 from pyiceberg.avro.file import AvroFile, AvroOutputFile
 from pyiceberg.conversions import to_bytes
 from pyiceberg.exceptions import ValidationError
@@ -950,9 +951,16 @@ class ManifestWriter(ABC):
     _deleted_rows: int
     _min_sequence_number: Optional[int]
     _partitions: List[Record]
-    _reused_entry_wrapper: ManifestEntry
+    _compression: AvroCompressionCodec
 
-    def __init__(self, spec: PartitionSpec, schema: Schema, output_file: OutputFile, snapshot_id: int) -> None:
+    def __init__(
+        self,
+        spec: PartitionSpec,
+        schema: Schema,
+        output_file: OutputFile,
+        snapshot_id: int,
+        avro_compression: AvroCompressionCodec,
+    ) -> None:
         self.closed = False
         self._spec = spec
         self._schema = schema
@@ -967,6 +975,7 @@ def __init__(self, spec: PartitionSpec, schema: Schema, output_file: OutputFile,
         self._deleted_rows = 0
         self._min_sequence_number = None
         self._partitions = []
+        self._compression = avro_compression
 
     def __enter__(self) -> ManifestWriter:
         """Open the writer."""
@@ -1002,6 +1011,7 @@ def _meta(self) -> Dict[str, str]:
             "partition-spec": to_json(self._spec.fields).decode("utf-8"),
             "partition-spec-id": str(self._spec.spec_id),
             "format-version": str(self.version),
+            AVRO_CODEC_KEY: self._compression,
         }
 
     def _with_partition(self, format_version: TableVersion) -> Schema:
@@ -1113,13 +1123,15 @@ def existing(self, entry: ManifestEntry) -> ManifestWriter:
 
 
 class ManifestWriterV1(ManifestWriter):
-    def __init__(self, spec: PartitionSpec, schema: Schema, output_file: OutputFile, snapshot_id: int):
-        super().__init__(
-            spec,
-            schema,
-            output_file,
-            snapshot_id,
-        )
+    def __init__(
+        self,
+        spec: PartitionSpec,
+        schema: Schema,
+        output_file: OutputFile,
+        snapshot_id: int,
+        avro_compression: AvroCompressionCodec,
+    ):
+        super().__init__(spec, schema, output_file, snapshot_id, avro_compression)
 
     def content(self) -> ManifestContent:
         return ManifestContent.DATA
@@ -1133,8 +1145,15 @@ def prepare_entry(self, entry: ManifestEntry) -> ManifestEntry:
 
 
 class ManifestWriterV2(ManifestWriter):
-    def __init__(self, spec: PartitionSpec, schema: Schema, output_file: OutputFile, snapshot_id: int):
-        super().__init__(spec, schema, output_file, snapshot_id)
+    def __init__(
+        self,
+        spec: PartitionSpec,
+        schema: Schema,
+        output_file: OutputFile,
+        snapshot_id: int,
+        avro_compression: AvroCompressionCodec,
+    ):
+        super().__init__(spec, schema, output_file, snapshot_id, avro_compression)
 
     def content(self) -> ManifestContent:
         return ManifestContent.DATA
@@ -1160,12 +1179,17 @@ def prepare_entry(self, entry: ManifestEntry) -> ManifestEntry:
 
 
 def write_manifest(
-    format_version: TableVersion, spec: PartitionSpec, schema: Schema, output_file: OutputFile, snapshot_id: int
+    format_version: TableVersion,
+    spec: PartitionSpec,
+    schema: Schema,
+    output_file: OutputFile,
+    snapshot_id: int,
+    avro_compression: AvroCompressionCodec,
 ) -> ManifestWriter:
     if format_version == 1:
-        return ManifestWriterV1(spec, schema, output_file, snapshot_id)
+        return ManifestWriterV1(spec, schema, output_file, snapshot_id, avro_compression)
     elif format_version == 2:
-        return ManifestWriterV2(spec, schema, output_file, snapshot_id)
+        return ManifestWriterV2(spec, schema, output_file, snapshot_id, avro_compression)
     else:
         raise ValueError(f"Cannot write manifest for table version: {format_version}")
 
@@ -1215,14 +1239,21 @@ def add_manifests(self, manifest_files: List[ManifestFile]) -> ManifestListWrite
 
 
 class ManifestListWriterV1(ManifestListWriter):
-    def __init__(self, output_file: OutputFile, snapshot_id: int, parent_snapshot_id: Optional[int]):
+    def __init__(
+        self,
+        output_file: OutputFile,
+        snapshot_id: int,
+        parent_snapshot_id: Optional[int],
+        compression: AvroCompressionCodec,
+    ):
         super().__init__(
             format_version=1,
             output_file=output_file,
             meta={
                 "snapshot-id": str(snapshot_id),
                 "parent-snapshot-id": str(parent_snapshot_id) if parent_snapshot_id is not None else "null",
                 "format-version": "1",
+                AVRO_CODEC_KEY: compression,
             },
         )
 
@@ -1236,7 +1267,14 @@ class ManifestListWriterV2(ManifestListWriter):
     _commit_snapshot_id: int
     _sequence_number: int
 
-    def __init__(self, output_file: OutputFile, snapshot_id: int, parent_snapshot_id: Optional[int], sequence_number: int):
+    def __init__(
+        self,
+        output_file: OutputFile,
+        snapshot_id: int,
+        parent_snapshot_id: Optional[int],
+        sequence_number: int,
+        compression: AvroCompressionCodec,
+    ):
         super().__init__(
             format_version=2,
             output_file=output_file,
@@ -1245,6 +1283,7 @@ def __init__(self, output_file: OutputFile, snapshot_id: int, parent_snapshot_id
                 "parent-snapshot-id": str(parent_snapshot_id) if parent_snapshot_id is not None else "null",
                 "sequence-number": str(sequence_number),
                 "format-version": "2",
+                AVRO_CODEC_KEY: compression,
             },
         )
         self._commit_snapshot_id = snapshot_id
@@ -1279,12 +1318,13 @@ def write_manifest_list(
     snapshot_id: int,
     parent_snapshot_id: Optional[int],
     sequence_number: Optional[int],
+    avro_compression: AvroCompressionCodec,
 ) -> ManifestListWriter:
     if format_version == 1:
-        return ManifestListWriterV1(output_file, snapshot_id, parent_snapshot_id)
+        return ManifestListWriterV1(output_file, snapshot_id, parent_snapshot_id, avro_compression)
     elif format_version == 2:
         if sequence_number is None:
             raise ValueError(f"Sequence-number is required for V2 tables: {sequence_number}")
-        return ManifestListWriterV2(output_file, snapshot_id, parent_snapshot_id, sequence_number)
+        return ManifestListWriterV2(output_file, snapshot_id, parent_snapshot_id, sequence_number, avro_compression)
     else:
         raise ValueError(f"Cannot write manifest list for table version: {format_version}")

pyiceberg/table/__init__.py

@@ -188,6 +188,9 @@ class TableProperties:
     WRITE_TARGET_FILE_SIZE_BYTES = "write.target-file-size-bytes"
     WRITE_TARGET_FILE_SIZE_BYTES_DEFAULT = 512 * 1024 * 1024  # 512 MB
 
+    WRITE_AVRO_COMPRESSION = "write.avro.compression-codec"
+    WRITE_AVRO_COMPRESSION_DEFAULT = "gzip"
+
     DEFAULT_WRITE_METRICS_MODE = "write.metadata.metrics.default"
     DEFAULT_WRITE_METRICS_MODE_DEFAULT = "truncate(16)"
 

pyiceberg/table/update/snapshot.py

@@ -28,6 +28,7 @@
 
 from sortedcontainers import SortedList
 
+from pyiceberg.avro.codecs import AvroCompressionCodec
 from pyiceberg.expressions import (
     AlwaysFalse,
     BooleanExpression,
@@ -105,6 +106,7 @@ class _SnapshotProducer(UpdateTableMetadata[U], Generic[U]):
     _added_data_files: List[DataFile]
     _manifest_num_counter: itertools.count[int]
     _deleted_data_files: Set[DataFile]
+    _compression: AvroCompressionCodec
 
     def __init__(
         self,
@@ -127,6 +129,11 @@ def __init__(
         self._deleted_data_files = set()
         self.snapshot_properties = snapshot_properties
         self._manifest_num_counter = itertools.count(0)
+        from pyiceberg.table import TableProperties
+
+        self._compression = self._transaction.table_metadata.properties.get(  # type: ignore
+            TableProperties.WRITE_AVRO_COMPRESSION, TableProperties.WRITE_AVRO_COMPRESSION_DEFAULT
+        )
 
     def append_data_file(self, data_file: DataFile) -> _SnapshotProducer[U]:
         self._added_data_files.append(data_file)
@@ -155,6 +162,7 @@ def _write_added_manifest() -> List[ManifestFile]:
                     schema=self._transaction.table_metadata.schema(),
                     output_file=self.new_manifest_output(),
                     snapshot_id=self._snapshot_id,
+                    avro_compression=self._compression,
                 ) as writer:
                     for data_file in self._added_data_files:
                         writer.add(
@@ -185,6 +193,7 @@ def _write_delete_manifest() -> List[ManifestFile]:
                         schema=self._transaction.table_metadata.schema(),
                         output_file=self.new_manifest_output(),
                         snapshot_id=self._snapshot_id,
+                        avro_compression=self._compression,
                     ) as writer:
                         for entry in entries:
                             writer.add_entry(entry)
@@ -250,12 +259,14 @@ def _commit(self) -> UpdatesAndRequirements:
         )
         location_provider = self._transaction._table.location_provider()
         manifest_list_file_path = location_provider.new_metadata_location(file_name)
+
         with write_manifest_list(
             format_version=self._transaction.table_metadata.format_version,
             output_file=self._io.new_output(manifest_list_file_path),
             snapshot_id=self._snapshot_id,
             parent_snapshot_id=self._parent_snapshot_id,
             sequence_number=next_sequence_number,
+            avro_compression=self._compression,
         ) as writer:
             writer.add_manifests(new_manifests)
 
@@ -292,6 +303,7 @@ def new_manifest_writer(self, spec: PartitionSpec) -> ManifestWriter:
             schema=self._transaction.table_metadata.schema(),
             output_file=self.new_manifest_output(),
             snapshot_id=self._snapshot_id,
+            avro_compression=self._compression,
         )
 
     def new_manifest_output(self) -> OutputFile:
@@ -417,6 +429,7 @@ def _copy_with_new_status(entry: ManifestEntry, status: ManifestEntryStatus) ->
                                     schema=self._transaction.table_metadata.schema(),
                                     output_file=self.new_manifest_output(),
                                     snapshot_id=self._snapshot_id,
+                                    avro_compression=self._compression,
                                 ) as writer:
                                     for existing_entry in existing_entries:
                                         writer.add_entry(existing_entry)
@@ -704,6 +717,7 @@ def _existing_manifests(self) -> List[ManifestFile]:
                             schema=self._transaction.table_metadata.schema(),
                             output_file=self.new_manifest_output(),
                             snapshot_id=self._snapshot_id,
+                            avro_compression=self._compression,
                         ) as writer:
                             [
                                 writer.add_entry(