diff --git a/MODULE.bazel b/MODULE.bazel
index 7cd6f0343..62a8a2cb1 100644
--- a/MODULE.bazel
+++ b/MODULE.bazel
@@ -79,8 +79,8 @@ use_repo(rules_angular, rules_angular_configurable_deps = "dev_infra_rules_angul
 pnpm = use_extension("@aspect_rules_js//npm:extensions.bzl", "pnpm")
 pnpm.pnpm(
     name = "pnpm",
-    pnpm_version = "10.28.0",
-    pnpm_version_integrity = "sha512-Bd9x0UIfITmeBT/eVnzqNNRG+gLHZXFEG/wceVbpjjYwiJgtlARl/TRIDU2QoGaLwSNi+KqIAApk6D0LDke+SA==",
+    pnpm_version = "10.28.1",
+    pnpm_version_integrity = "sha512-fX27yp6ZRHt8O/enMoavqva+mSUeuUmLrvp9QGiS9nuHmts6HX5of8TMwaOIxxdfuq5WeiarRNEGe1T8sNajFg==",
 )
 use_repo(pnpm, "pnpm")
 
diff --git a/MODULE.bazel.lock b/MODULE.bazel.lock
index c4fe0a988..0280c43b4 100644
--- a/MODULE.bazel.lock
+++ b/MODULE.bazel.lock
@@ -413,7 +413,7 @@
     "@@aspect_rules_js+//npm:extensions.bzl%pnpm": {
       "general": {
         "bzlTransitiveDigest": "k8N/8kN3PnK4a8S/PlynWenNzI5NCiFM0O/A1AKzf7o=",
-        "usagesDigest": "op86it8zwCAiAXOaXscoiQdbBB3nUL42dbxIFWEXA9Q=",
+        "usagesDigest": "p8d9KmU/Ilyixi0hHrAvY7j04KJ+yHthDyfrrtde0sU=",
         "recordedFileInputs": {},
         "recordedDirentsInputs": {},
         "envVariables": {},
@@ -422,11 +422,11 @@
             "repoRuleId": "@@aspect_rules_js+//npm/private:npm_import.bzl%npm_import_rule",
             "attributes": {
               "package": "pnpm",
-              "version": "10.28.0",
+              "version": "10.28.1",
               "root_package": "",
               "link_workspace": "",
               "link_packages": {},
-              "integrity": "sha512-Bd9x0UIfITmeBT/eVnzqNNRG+gLHZXFEG/wceVbpjjYwiJgtlARl/TRIDU2QoGaLwSNi+KqIAApk6D0LDke+SA==",
+              "integrity": "sha512-fX27yp6ZRHt8O/enMoavqva+mSUeuUmLrvp9QGiS9nuHmts6HX5of8TMwaOIxxdfuq5WeiarRNEGe1T8sNajFg==",
               "url": "",
               "commit": "",
               "patch_args": [
@@ -449,7 +449,7 @@
             "repoRuleId": "@@aspect_rules_js+//npm/private:npm_import.bzl%npm_import_links",
             "attributes": {
               "package": "pnpm",
-              "version": "10.28.0",
+              "version": "10.28.1",
               "dev": false,
               "root_package": "",
               "link_packages": {},
diff --git a/bazel/integration/tests/angular-cli/package.json b/bazel/integration/tests/angular-cli/package.json
index b099283bc..161915dd3 100644
--- a/bazel/integration/tests/angular-cli/package.json
+++ b/bazel/integration/tests/angular-cli/package.json
@@ -9,7 +9,7 @@
     "test": "ng test"
   },
   "private": true,
-  "packageManager": "pnpm@10.28.0",
+  "packageManager": "pnpm@10.28.1",
   "dependencies": {
     "@angular/animations": "21.1.0-rc.0",
     "@angular/common": "21.1.0-rc.0",
diff --git a/bazel/integration/tests/nested_bazel_workspaces/basic/BUILD.bazel b/bazel/integration/tests/nested_bazel_workspaces/basic/BUILD.bazel
index 50698d1c0..87990dced 100644
--- a/bazel/integration/tests/nested_bazel_workspaces/basic/BUILD.bazel
+++ b/bazel/integration/tests/nested_bazel_workspaces/basic/BUILD.bazel
@@ -1,3 +1,5 @@
+load("@rules_shell//shell:sh_test.bzl", "sh_test")
+
 sh_test(
     name = "test",
     srcs = ["some_test.sh"],
diff --git a/bazel/integration/tests/nested_bazel_workspaces/basic/MODULE.bazel b/bazel/integration/tests/nested_bazel_workspaces/basic/MODULE.bazel
new file mode 100644
index 000000000..0df0d2606
--- /dev/null
+++ b/bazel/integration/tests/nested_bazel_workspaces/basic/MODULE.bazel
@@ -0,0 +1,3 @@
+module(name = "nested_bazel_workspace")
+
+bazel_dep(name = "rules_shell", version = "0.6.1")
diff --git a/bazel/integration/tests/nested_bazel_workspaces/basic/MODULE.bazel.lock b/bazel/integration/tests/nested_bazel_workspaces/basic/MODULE.bazel.lock
new file mode 100644
index 000000000..42ab1f6f3
--- /dev/null
+++ b/bazel/integration/tests/nested_bazel_workspaces/basic/MODULE.bazel.lock
@@ -0,0 +1,469 @@
+{
+  "lockFileVersion": 26,
+  "registryFileHashes": {
+    "https://bcr.bazel.build/bazel_registry.json": "8a28e4aff06ee60aed2a8c281907fb8bcbf3b753c91fb5a5c57da3215d5b3497",
+    "https://bcr.bazel.build/modules/abseil-cpp/20210324.2/MODULE.bazel": "7cd0312e064fde87c8d1cd79ba06c876bd23630c83466e9500321be55c96ace2",
+    "https://bcr.bazel.build/modules/abseil-cpp/20211102.0/MODULE.bazel": "70390338f7a5106231d20620712f7cccb659cd0e9d073d1991c038eb9fc57589",
+    "https://bcr.bazel.build/modules/abseil-cpp/20230125.1/MODULE.bazel": "89047429cb0207707b2dface14ba7f8df85273d484c2572755be4bab7ce9c3a0",
+    "https://bcr.bazel.build/modules/abseil-cpp/20230802.0.bcr.1/MODULE.bazel": "1c8cec495288dccd14fdae6e3f95f772c1c91857047a098fad772034264cc8cb",
+    "https://bcr.bazel.build/modules/abseil-cpp/20230802.0/MODULE.bazel": "d253ae36a8bd9ee3c5955384096ccb6baf16a1b1e93e858370da0a3b94f77c16",
+    "https://bcr.bazel.build/modules/abseil-cpp/20230802.1/MODULE.bazel": "fa92e2eb41a04df73cdabeec37107316f7e5272650f81d6cc096418fe647b915",
+    "https://bcr.bazel.build/modules/abseil-cpp/20240116.1/MODULE.bazel": "37bcdb4440fbb61df6a1c296ae01b327f19e9bb521f9b8e26ec854b6f97309ed",
+    "https://bcr.bazel.build/modules/abseil-cpp/20240116.2/MODULE.bazel": "73939767a4686cd9a520d16af5ab440071ed75cec1a876bf2fcfaf1f71987a16",
+    "https://bcr.bazel.build/modules/abseil-cpp/20250127.1/MODULE.bazel": "c4a89e7ceb9bf1e25cf84a9f830ff6b817b72874088bf5141b314726e46a57c1",
+    "https://bcr.bazel.build/modules/abseil-cpp/20250512.1/MODULE.bazel": "d209fdb6f36ffaf61c509fcc81b19e81b411a999a934a032e10cd009a0226215",
+    "https://bcr.bazel.build/modules/abseil-cpp/20250814.1/MODULE.bazel": "51f2312901470cdab0dbdf3b88c40cd21c62a7ed58a3de45b365ddc5b11bcab2",
+    "https://bcr.bazel.build/modules/abseil-cpp/20250814.1/source.json": "cea3901d7e299da7320700abbaafe57a65d039f10d0d7ea601c4a66938ea4b0c",
+    "https://bcr.bazel.build/modules/apple_support/1.11.1/MODULE.bazel": "1843d7cd8a58369a444fc6000e7304425fba600ff641592161d9f15b179fb896",
+    "https://bcr.bazel.build/modules/apple_support/1.15.1/MODULE.bazel": "a0556fefca0b1bb2de8567b8827518f94db6a6e7e7d632b4c48dc5f865bc7c85",
+    "https://bcr.bazel.build/modules/apple_support/1.21.0/MODULE.bazel": "ac1824ed5edf17dee2fdd4927ada30c9f8c3b520be1b5fd02a5da15bc10bff3e",
+    "https://bcr.bazel.build/modules/apple_support/1.21.1/MODULE.bazel": "5809fa3efab15d1f3c3c635af6974044bac8a4919c62238cce06acee8a8c11f1",
+    "https://bcr.bazel.build/modules/apple_support/1.24.2/MODULE.bazel": "0e62471818affb9f0b26f128831d5c40b074d32e6dda5a0d3852847215a41ca4",
+    "https://bcr.bazel.build/modules/apple_support/1.24.2/source.json": "2c22c9827093250406c5568da6c54e6fdf0ef06238def3d99c71b12feb057a8d",
+    "https://bcr.bazel.build/modules/bazel_features/1.1.1/MODULE.bazel": "27b8c79ef57efe08efccbd9dd6ef70d61b4798320b8d3c134fd571f78963dbcd",
+    "https://bcr.bazel.build/modules/bazel_features/1.10.0/MODULE.bazel": "f75e8807570484a99be90abcd52b5e1f390362c258bcb73106f4544957a48101",
+    "https://bcr.bazel.build/modules/bazel_features/1.11.0/MODULE.bazel": "f9382337dd5a474c3b7d334c2f83e50b6eaedc284253334cf823044a26de03e8",
+    "https://bcr.bazel.build/modules/bazel_features/1.15.0/MODULE.bazel": "d38ff6e517149dc509406aca0db3ad1efdd890a85e049585b7234d04238e2a4d",
+    "https://bcr.bazel.build/modules/bazel_features/1.17.0/MODULE.bazel": "039de32d21b816b47bd42c778e0454217e9c9caac4a3cf8e15c7231ee3ddee4d",
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+    "https://bcr.bazel.build/modules/bazel_features/1.19.0/MODULE.bazel": "59adcdf28230d220f0067b1f435b8537dd033bfff8db21335ef9217919c7fb58",
+    "https://bcr.bazel.build/modules/bazel_features/1.21.0/MODULE.bazel": "675642261665d8eea09989aa3b8afb5c37627f1be178382c320d1b46afba5e3b",
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+    "https://bcr.bazel.build/modules/bazel_features/1.27.0/MODULE.bazel": "621eeee06c4458a9121d1f104efb80f39d34deff4984e778359c60eaf1a8cb65",
+    "https://bcr.bazel.build/modules/bazel_features/1.28.0/MODULE.bazel": "4b4200e6cbf8fa335b2c3f43e1d6ef3e240319c33d43d60cc0fbd4b87ece299d",
+    "https://bcr.bazel.build/modules/bazel_features/1.3.0/MODULE.bazel": "cdcafe83ec318cda34e02948e81d790aab8df7a929cec6f6969f13a489ccecd9",
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+    "https://bcr.bazel.build/modules/bazel_features/1.33.0/MODULE.bazel": "8b8dc9d2a4c88609409c3191165bccec0e4cb044cd7a72ccbe826583303459f6",
+    "https://bcr.bazel.build/modules/bazel_features/1.33.0/source.json": "13617db3930328c2cd2807a0f13d52ca870ac05f96db9668655113265147b2a6",
+    "https://bcr.bazel.build/modules/bazel_features/1.4.1/MODULE.bazel": "e45b6bb2350aff3e442ae1111c555e27eac1d915e77775f6fdc4b351b758b5d7",
+    "https://bcr.bazel.build/modules/bazel_features/1.9.1/MODULE.bazel": "8f679097876a9b609ad1f60249c49d68bfab783dd9be012faf9d82547b14815a",
+    "https://bcr.bazel.build/modules/bazel_skylib/1.0.3/MODULE.bazel": "bcb0fd896384802d1ad283b4e4eb4d718eebd8cb820b0a2c3a347fb971afd9d8",
+    "https://bcr.bazel.build/modules/bazel_skylib/1.1.1/MODULE.bazel": "1add3e7d93ff2e6998f9e118022c84d163917d912f5afafb3058e3d2f1545b5e",
+    "https://bcr.bazel.build/modules/bazel_skylib/1.2.0/MODULE.bazel": "44fe84260e454ed94ad326352a698422dbe372b21a1ac9f3eab76eb531223686",
+    "https://bcr.bazel.build/modules/bazel_skylib/1.2.1/MODULE.bazel": "f35baf9da0efe45fa3da1696ae906eea3d615ad41e2e3def4aeb4e8bc0ef9a7a",
+    "https://bcr.bazel.build/modules/bazel_skylib/1.3.0/MODULE.bazel": "20228b92868bf5cfc41bda7afc8a8ba2a543201851de39d990ec957b513579c5",
+    "https://bcr.bazel.build/modules/bazel_skylib/1.4.1/MODULE.bazel": "a0dcb779424be33100dcae821e9e27e4f2901d9dfd5333efe5ac6a8d7ab75e1d",
+    "https://bcr.bazel.build/modules/bazel_skylib/1.4.2/MODULE.bazel": "3bd40978e7a1fac911d5989e6b09d8f64921865a45822d8b09e815eaa726a651",
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+    "https://bcr.bazel.build/modules/bazel_skylib/1.8.2/MODULE.bazel": "69ad6927098316848b34a9142bcc975e018ba27f08c4ff403f50c1b6e646ca67",
+    "https://bcr.bazel.build/modules/bazel_skylib/1.8.2/source.json": "34a3c8bcf233b835eb74be9d628899bb32999d3e0eadef1947a0a562a2b16ffb",
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+    "https://bcr.bazel.build/modules/buildozer/8.2.1/source.json": "7c33f6a26ee0216f85544b4bca5e9044579e0219b6898dd653f5fb449cf2e484",
+    "https://bcr.bazel.build/modules/google_benchmark/1.8.2/MODULE.bazel": "a70cf1bba851000ba93b58ae2f6d76490a9feb74192e57ab8e8ff13c34ec50cb",
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+    "https://bcr.bazel.build/modules/googletest/1.14.0/MODULE.bazel": "cfbcbf3e6eac06ef9d85900f64424708cc08687d1b527f0ef65aa7517af8118f",
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+    "https://bcr.bazel.build/modules/platforms/0.0.11/MODULE.bazel": "0daefc49732e227caa8bfa834d65dc52e8cc18a2faf80df25e8caea151a9413f",
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+    "https://bcr.bazel.build/modules/platforms/0.0.6/MODULE.bazel": "ad6eeef431dc52aefd2d77ed20a4b353f8ebf0f4ecdd26a807d2da5aa8cd0615",
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+    "https://bcr.bazel.build/modules/platforms/1.0.0/source.json": "f4ff1fd412e0246fd38c82328eb209130ead81d62dcd5a9e40910f867f733d96",
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+    "https://bcr.bazel.build/modules/protobuf/27.0/MODULE.bazel": "7873b60be88844a0a1d8f80b9d5d20cfbd8495a689b8763e76c6372998d3f64c",
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+    "https://bcr.bazel.build/modules/protobuf/29.0-rc3/MODULE.bazel": "33c2dfa286578573afc55a7acaea3cada4122b9631007c594bf0729f41c8de92",
+    "https://bcr.bazel.build/modules/protobuf/29.1/MODULE.bazel": "557c3457560ff49e122ed76c0bc3397a64af9574691cb8201b4e46d4ab2ecb95",
+    "https://bcr.bazel.build/modules/protobuf/3.19.0/MODULE.bazel": "6b5fbb433f760a99a22b18b6850ed5784ef0e9928a72668b66e4d7ccd47db9b0",
+    "https://bcr.bazel.build/modules/protobuf/32.1/MODULE.bazel": "89cd2866a9cb07fee9ff74c41ceace11554f32e0d849de4e23ac55515cfada4d",
+    "https://bcr.bazel.build/modules/protobuf/33.4/MODULE.bazel": "114775b816b38b6d0ca620450d6b02550c60ceedfdc8d9a229833b34a223dc42",
+    "https://bcr.bazel.build/modules/protobuf/33.4/source.json": "555f8686b4c7d6b5ba731fbea13bf656b4bfd9a7ff629c1d9d3f6e1d6155de79",
+    "https://bcr.bazel.build/modules/pybind11_bazel/2.11.1/MODULE.bazel": "88af1c246226d87e65be78ed49ecd1e6f5e98648558c14ce99176da041dc378e",
+    "https://bcr.bazel.build/modules/pybind11_bazel/2.12.0/MODULE.bazel": "e6f4c20442eaa7c90d7190d8dc539d0ab422f95c65a57cc59562170c58ae3d34",
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+            "repoRuleId": "@@rules_python+//python/uv/private:uv_toolchains_repo.bzl%uv_toolchains_repo",
+            "attributes": {
+              "toolchain_type": "'@@rules_python+//python/uv:uv_toolchain_type'",
+              "toolchain_names": [
+                "none"
+              ],
+              "toolchain_implementations": {
+                "none": "'@@rules_python+//python:none'"
+              },
+              "toolchain_compatible_with": {
+                "none": [
+                  "@platforms//:incompatible"
+                ]
+              },
+              "toolchain_target_settings": {}
+            }
+          }
+        }
+      }
+    }
+  },
+  "facts": {}
+}
diff --git a/bazel/integration/tests/nested_bazel_workspaces/basic/WORKSPACE b/bazel/integration/tests/nested_bazel_workspaces/basic/WORKSPACE
deleted file mode 100644
index 21bbb4ca5..000000000
--- a/bazel/integration/tests/nested_bazel_workspaces/basic/WORKSPACE
+++ /dev/null
@@ -1,3 +0,0 @@
-workspace(
-    name = "nested_bazel_workspace",
-)
diff --git a/bazel/integration/tests/nested_bazel_workspaces/basic/package.json b/bazel/integration/tests/nested_bazel_workspaces/basic/package.json
index 79323e009..2093e1060 100644
--- a/bazel/integration/tests/nested_bazel_workspaces/basic/package.json
+++ b/bazel/integration/tests/nested_bazel_workspaces/basic/package.json
@@ -6,7 +6,7 @@
   "scripts": {
     "test": "bazelisk test ..."
   },
-  "packageManager": "pnpm@10.28.0",
+  "packageManager": "pnpm@10.28.1",
   "devDependencies": {
     "@bazel/bazelisk": "^1.11.0"
   }
diff --git a/bazel/integration/tests/package_mappings/package.json b/bazel/integration/tests/package_mappings/package.json
index 0fb84d5d1..213fa3e82 100644
--- a/bazel/integration/tests/package_mappings/package.json
+++ b/bazel/integration/tests/package_mappings/package.json
@@ -3,7 +3,7 @@
   "version": "1.0.0",
   "main": "index.js",
   "license": "MIT",
-  "packageManager": "pnpm@10.28.0",
+  "packageManager": "pnpm@10.28.1",
   "dependencies": {
     "fake_pkg": "link:./in-existing-linked-by-bazel"
   },
diff --git a/bazel/integration/tests/playwright_chromium/package.json b/bazel/integration/tests/playwright_chromium/package.json
index 36b657fa3..e00506efe 100644
--- a/bazel/integration/tests/playwright_chromium/package.json
+++ b/bazel/integration/tests/playwright_chromium/package.json
@@ -9,5 +9,5 @@
     "@playwright/test": "^1.16.3",
     "typescript": "^5.9.3"
   },
-  "packageManager": "pnpm@10.28.0"
+  "packageManager": "pnpm@10.28.1"
 }
diff --git a/package.json b/package.json
index 479fee578..39ff6ee50 100644
--- a/package.json
+++ b/package.json
@@ -2,11 +2,11 @@
   "name": "@angular/build-tooling",
   "version": "0.0.0-{SCM_HEAD_SHA}",
   "private": true,
-  "packageManager": "pnpm@10.28.0",
+  "packageManager": "pnpm@10.28.1",
   "engines": {
     "npm": "Please use pnpm instead of NPM to install dependencies",
     "yarn": "Please use pnpm instead of Yarn to install dependencies",
-    "pnpm": "10.28.0"
+    "pnpm": "10.28.1"
   },
   "scripts": {
     "prepare": "husky",