Added information and images to the HBP script NO_JIRA

Author: Alex-AMC

scripts/hydrogen_bond_propensity/ReadMe.md

@@ -3,33 +3,47 @@
 Writes a .docx report of a hydrogen bond propensity calculation
 
 ----
-[Summary]
+Inlucded in the report:
+- Hydrogen bond propensity chart.
+- Table of Predicted intermolecular hydrogen bond propensities. 
+- Table of Hydrogen bond coordination likelihood.
+- Table of Hydrogen Bond Donor/Acceptor Definitions 
+- Functional Group Definitions for CSD Substructure Searches
+  - Search Results
+  - Number of hits selected per functional group
+  - Hydrogen Bond Analysis of Training Dataset
+  - Hydrogen bond donor and acceptor outcomes
 
 ## Example 
 
-\#TODO [Output from script]
+<img src="assets/HXACAN_Report_Screenshot_1.png" width="250px"> 
+<img src="assets/HXACAN_Report_Screenshot_2.png" width="250px">
+
+<img src="assets/HXACAN_Report_Screenshot_3.png" width="250px">
+<img src="assets/HXACAN_Report_Screenshot_4.png" width="250px">
 
 ## Requirements 
 
-```matplotlib, docxtpl```
+- ```matplotlib, docxtpl```
 
 - hydrogen_bond_propensity_report.docx
 ## Licensing Requirements 
-\#TODO [LIST]
+- CSD-Core
 
 ## Instructions on running
 
 Using mol2 file 
+
 ```cmd
-activate ccdc
+"C:\Program Files\CCDC\Python_API_2022\miniconda\Scripts\activate.bat"
 python hydrogen_bond_propensity_report.py structure.mol2 
 ```
 
 Options: 
-
-- \- d | --directory - sets the working directory 
-- \- n | --noopen - Do not automatically open the generated output file.
-
+```
+- d | --directory - sets the working directory 
+- n | --noopen - Do not automatically open the generated output file.
+```
 ## Author
 
 _Andrew Maloney_ - CCDC (2017)