From a9e1a8e48f506f2f5d02dff64a4fb7e141842165 Mon Sep 17 00:00:00 2001 From: Mike Marchetti Date: Thu, 15 May 2025 13:33:02 -0400 Subject: [PATCH 1/4] fix: add nested transaction support run_transaction utilizes the special 'cockroach_restart' protocol, as per: https://www.cockroachlabs.com/blog/nested-transactions-in-cockroachdb-20-1/ In order to support nested transactions, the cockroach_restart protocol for nested transactions can be related on versions after v20.1. The motivation for this change was to allow multiple nested transactions to occur over the same engine connection and high level transaction (BEGIN/COMMIT). This allows one nested transaction to perform an INSERT or UPDATE, while subsequent transactions could retrieve that result (before the final COMMIT). This primarily works around conditions in sqlalchemy, where one would like to perform an orm.flush(), but cannot, when utilizing the cockroach run_transaction model. By default the run_transaction defaults to using the cockroach_restart protocol, so no observed behavior is seen to current users. Signed-off-by: Mike Marchetti --- cockroach_helper.sh | 22 + poetry.lock | 640 ++++++++++++++++++++++++++ pyproject.toml | 40 ++ sqlalchemy_cockroachdb/transaction.py | 110 +++-- test/test_run_transaction_core.py | 41 +- tox.ini | 1 + 6 files changed, 812 insertions(+), 42 deletions(-) create mode 100755 cockroach_helper.sh create mode 100644 poetry.lock diff --git a/cockroach_helper.sh b/cockroach_helper.sh new file mode 100755 index 0000000..eb150a1 --- /dev/null +++ b/cockroach_helper.sh @@ -0,0 +1,22 @@ +#!/bin/bash +COCKROACHDB=cockroach-v23.1.13.linux-amd64 +CROACHDB=~/.cache/$COCKROACHDB/cockroach + +quit_cockroachdb() { + OLDPIDNS=$(ps -o pidns -C cockroach | awk 'NR==2 {print $0}') + if [ -n "$OLDPIDNS" ]; then + pkill --ns $$ $OLDPIDNS + fi + return 0 +} + +[ -n "$HOST" ] || HOST=localhost +mkdir -p $(dirname $CROACHDB) +[[ -f "$CROACHDB" ]] || wget -qO- https://binaries.cockroachdb.com/$COCKROACHDB.tgz | tar xvz --directory ~/.cache +if [ $1 == "start" ]; then + 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b/pyproject.toml index 4379329..91a8f7d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,3 +1,43 @@ +[project] +name = "sqlalchemy-cockroachdb" +version = "2.0.3.dev0" +license="http://www.apache.org/licenses/LICENSE-2.0" +description = "" +authors = [ + {name = "Cockroach Labs",email = "cockroach-db@googlegroups.com"} +] +readme = "README.md" +requires-python = ">=3.9" +dependencies = [ + "sqlalchemy (>=2.0.41,<3.0.0)" +] + + +[build-system] +requires = ["poetry-core>=2.0.0,<3.0.0"] +build-backend = "poetry.core.masonry.api" + +[tool.poetry.group.dev.dependencies] +alembic = "1.15.2" +async-timeout = "5.0.1" +asyncpg = "0.30.0" +attrs = "25.3.0" +futures = "3.0.5" +greenlet = "3.1.1" +iniconfig = "2.1.0" +mako = "1.3.9" +markupsafe = "3.0.2" +mock = "5.2.0" +more-itertools = "10.6.0" +packaging = "24.2" +pluggy = "1.5.0" +psycopg = "3.2.6" +psycopg2 = "2.9.10" +py = "1.11.0" +pytest = "7.1.3" +tomli = "2.2.1" +typing-extensions = "4.13.1" + [tool.pytest.ini_options] addopts = "--tb native -v -r sfxX --maxfail=250 -p warnings -p logging --strict-markers" markers = [ diff --git a/sqlalchemy_cockroachdb/transaction.py b/sqlalchemy_cockroachdb/transaction.py index 95ef429..795fb70 100644 --- a/sqlalchemy_cockroachdb/transaction.py +++ b/sqlalchemy_cockroachdb/transaction.py @@ -8,7 +8,16 @@ from .base import savepoint_state -def run_transaction(transactor, callback, max_retries=None, max_backoff=0): +class ChainTransaction: + def __init__(self, transactions=None): + self.results = [] + self.transactions = transactions or [] + + def add_result(self, result): + self.results.append(result) + + +def run_transaction(transactor, callback, max_retries=None, max_backoff=0, **kwargs): """Run a transaction with retries. ``callback()`` will be called with one argument to execute the @@ -26,15 +35,18 @@ def run_transaction(transactor, callback, max_retries=None, max_backoff=0): transaction should be retried before giving up. ``max_backoff`` is an optional integer that specifies the capped number of seconds for the exponential back-off. + ``inject_error`` forces retry loop to run via SET inject_retry_errors_enabled = 'true' + ``use_cockroach_restart``, default true, utilizes the special cockroach_restart protocol, + as outlined in: https://www.cockroachlabs.com/blog/nested-transactions-in-cockroachdb-20-1/ """ if isinstance(transactor, (sqlalchemy.engine.Connection, sqlalchemy.orm.Session)): - return _txn_retry_loop(transactor, callback, max_retries, max_backoff) + return _txn_retry_loop(transactor, callback, max_retries, max_backoff, **kwargs) elif isinstance(transactor, sqlalchemy.engine.Engine): with transactor.connect() as connection: - return _txn_retry_loop(connection, callback, max_retries, max_backoff) + return _txn_retry_loop(connection, callback, max_retries, max_backoff, **kwargs) elif isinstance(transactor, sqlalchemy.orm.sessionmaker): session = transactor() - return _txn_retry_loop(session, callback, max_retries, max_backoff) + return _txn_retry_loop(session, callback, max_retries, max_backoff, **kwargs) else: raise TypeError("don't know how to run a transaction on %s", type(transactor)) @@ -46,27 +58,32 @@ class _NestedTransaction: loop to be rewritten by the dialect. """ - def __init__(self, conn): + def __init__(self, conn, use_cockroach_restart=True): self.conn = conn + self.use_cockroach_restart = use_cockroach_restart def __enter__(self): try: - savepoint_state.cockroach_restart = True + if self.use_cockroach_restart: + savepoint_state.cockroach_restart = True self.txn = self.conn.begin_nested() - if isinstance(self.conn, sqlalchemy.orm.Session): + if self.use_cockroach_restart and isinstance(self.conn, sqlalchemy.orm.Session): # Sessions are lazy and don't execute the savepoint # query until you ask for the connection. self.conn.connection() finally: - savepoint_state.cockroach_restart = False + if self.use_cockroach_restart: + savepoint_state.cockroach_restart = False return self def __exit__(self, typ, value, tb): try: - savepoint_state.cockroach_restart = True + if self.use_cockroach_restart: + savepoint_state.cockroach_restart = True self.txn.__exit__(typ, value, tb) finally: - savepoint_state.cockroach_restart = False + if self.use_cockroach_restart: + savepoint_state.cockroach_restart = False def retry_exponential_backoff(retry_count: int, max_backoff: int = 0) -> None: @@ -85,41 +102,52 @@ def retry_exponential_backoff(retry_count: int, max_backoff: int = 0) -> None: sleep(sleep_secs) -def _txn_retry_loop(conn, callback, max_retries, max_backoff): - """Inner transaction retry loop. - - ``conn`` may be either a Connection or a Session, but they both - have compatible ``begin()`` and ``begin_nested()`` methods. - """ +def run_in_nested_transaction(conn, callback, max_retries, max_backoff, inject_error=False, **kwargs): if isinstance(conn, sqlalchemy.orm.Session): dbapi_name = conn.bind.driver else: dbapi_name = conn.engine.driver retry_count = 0 - with conn.begin(): - while True: - try: - with _NestedTransaction(conn): - ret = callback(conn) - return ret - except sqlalchemy.exc.DatabaseError as e: - if max_retries is not None and retry_count >= max_retries: - raise - do_retry = False - if dbapi_name == "psycopg2": - import psycopg2 - import psycopg2.errorcodes - if isinstance(e.orig, psycopg2.OperationalError): - if e.orig.pgcode == psycopg2.errorcodes.SERIALIZATION_FAILURE: - do_retry = True - else: - import psycopg - if isinstance(e.orig, psycopg.errors.SerializationFailure): - do_retry = True - if do_retry: - retry_count += 1 - if max_backoff > 0: - retry_exponential_backoff(retry_count, max_backoff) - continue + while True: + if inject_error and retry_count == 0: + conn.execute(sqlalchemy.text("SET inject_retry_errors_enabled = 'true'")) + elif inject_error: + conn.execute(sqlalchemy.text("SET inject_retry_errors_enabled = 'false'")) + try: + with _NestedTransaction(conn, **kwargs): + return callback(conn) + except sqlalchemy.exc.DatabaseError as e: + if max_retries is not None and retry_count >= max_retries: raise + do_retry = False + if dbapi_name == "psycopg2": + import psycopg2 + import psycopg2.errorcodes + if isinstance(e.orig, psycopg2.OperationalError): + if e.orig.pgcode == psycopg2.errorcodes.SERIALIZATION_FAILURE: + do_retry = True + else: + import psycopg + if isinstance(e.orig, psycopg.errors.SerializationFailure): + do_retry = True + if do_retry: + retry_count += 1 + if max_backoff > 0: + retry_exponential_backoff(retry_count, max_backoff) + continue + raise + + +def _txn_retry_loop(conn, callback, max_retries, max_backoff, **kwargs): + """Inner transaction retry loop. + + ``conn`` may be either a Connection or a Session, but they both + have compatible ``begin()`` and ``begin_nested()`` methods. + """ + with conn.begin(): + result = run_in_nested_transaction(conn, callback, max_retries, max_backoff, **kwargs) + if isinstance(result, ChainTransaction): + for transaction in result.transactions: + result.add_result(run_in_nested_transaction(conn, transaction, max_retries, max_backoff, **kwargs)) + return result diff --git a/test/test_run_transaction_core.py b/test/test_run_transaction_core.py index da14e6b..1627dc1 100644 --- a/test/test_run_transaction_core.py +++ b/test/test_run_transaction_core.py @@ -3,8 +3,11 @@ from sqlalchemy.testing import fixtures from sqlalchemy.types import Integer import threading +from sqlalchemy.orm import sessionmaker, scoped_session, relationship + from sqlalchemy_cockroachdb import run_transaction +from sqlalchemy_cockroachdb.transaction import ChainTransaction meta = MetaData() @@ -25,7 +28,9 @@ def setup_method(self, method): ) def teardown_method(self, method): - meta.drop_all(testing.db) + session = scoped_session(sessionmaker(bind=testing.db)) + session.query(account_table).delete() + session.commit() def get_balances(self, conn): """Returns the balances of the two accounts as a list.""" @@ -134,3 +139,37 @@ def txn_body(conn): with testing.db.connect() as conn: rs = run_transaction(conn, txn_body) assert rs[0] == (1, 100) + + + def test_run_transaction_retry_with_nested(self): + def txn_body(conn): + rs = conn.execute(text("select acct, balance from account where acct = 1")) + conn.execute(text("select crdb_internal.force_retry('1s')")) + return [r for r in rs] + + with testing.db.connect() as conn: + rs = run_transaction(conn, txn_body, use_cockroach_restart=False) + assert rs[0] == (1, 100) + + + def test_run_chained_transaction(self): + def txn_body(conn): + # first transaction inserts + conn.execute( + account_table.insert(), [dict(acct=99, balance=100)] + ) + conn.execute(text("select crdb_internal.force_retry('1s')")) + + def _get_val(s): + rs = s.execute(text("select acct, balance from account where acct = 99")) + return [r for r in rs] + + # chain the get into a separate nested transaction, so that the value + # in the previous nested transaction is flushed and available + return ChainTransaction([lambda s : _get_val(s), lambda s : _get_val(s)]) + + with testing.db.connect() as conn: + rs = run_transaction(conn, txn_body, use_cockroach_restart=False) + assert len(rs.results) == 2 + assert rs.results[0][0] == (99,100) + assert rs.results[1][0] == (99,100) diff --git a/tox.ini b/tox.ini index a7c991b..7d37096 100644 --- a/tox.ini +++ b/tox.ini @@ -2,6 +2,7 @@ # We do not currently test with pypy because psycopg2 does not work there. envlist = py39 + py312 lint [testenv] From 10ded66dcbaaa70ba641b138d1f31d4936de7ee2 Mon Sep 17 00:00:00 2001 From: Gord Thompson Date: Fri, 16 May 2025 07:37:04 -0600 Subject: [PATCH 2/4] Avoid lint errors and SQLA version mismatch in CI --- pyproject.toml | 5 ++++- sqlalchemy_cockroachdb/transaction.py | 12 +++++++++--- test/test_run_transaction_core.py | 16 ++++++---------- 3 files changed, 19 insertions(+), 14 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 91a8f7d..839fda8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,7 +9,7 @@ authors = [ readme = "README.md" requires-python = ">=3.9" dependencies = [ - "sqlalchemy (>=2.0.41,<3.0.0)" + "sqlalchemy (>=2.0.40,<3.0.0)" ] @@ -17,6 +17,9 @@ dependencies = [ requires = ["poetry-core>=2.0.0,<3.0.0"] build-backend = "poetry.core.masonry.api" +[tool.black] +line-length = 100 + [tool.poetry.group.dev.dependencies] alembic = "1.15.2" async-timeout = "5.0.1" diff --git a/sqlalchemy_cockroachdb/transaction.py b/sqlalchemy_cockroachdb/transaction.py index 795fb70..3ccc4bd 100644 --- a/sqlalchemy_cockroachdb/transaction.py +++ b/sqlalchemy_cockroachdb/transaction.py @@ -98,11 +98,13 @@ def retry_exponential_backoff(retry_count: int, max_backoff: int = 0) -> None: :return: None """ - sleep_secs = uniform(0, min(max_backoff, 0.1 * (2 ** retry_count))) + sleep_secs = uniform(0, min(max_backoff, 0.1 * (2**retry_count))) sleep(sleep_secs) -def run_in_nested_transaction(conn, callback, max_retries, max_backoff, inject_error=False, **kwargs): +def run_in_nested_transaction( + conn, callback, max_retries, max_backoff, inject_error=False, **kwargs +): if isinstance(conn, sqlalchemy.orm.Session): dbapi_name = conn.bind.driver else: @@ -124,11 +126,13 @@ def run_in_nested_transaction(conn, callback, max_retries, max_backoff, inject_e if dbapi_name == "psycopg2": import psycopg2 import psycopg2.errorcodes + if isinstance(e.orig, psycopg2.OperationalError): if e.orig.pgcode == psycopg2.errorcodes.SERIALIZATION_FAILURE: do_retry = True else: import psycopg + if isinstance(e.orig, psycopg.errors.SerializationFailure): do_retry = True if do_retry: @@ -149,5 +153,7 @@ def _txn_retry_loop(conn, callback, max_retries, max_backoff, **kwargs): result = run_in_nested_transaction(conn, callback, max_retries, max_backoff, **kwargs) if isinstance(result, ChainTransaction): for transaction in result.transactions: - result.add_result(run_in_nested_transaction(conn, transaction, max_retries, max_backoff, **kwargs)) + result.add_result( + run_in_nested_transaction(conn, transaction, max_retries, max_backoff, **kwargs) + ) return result diff --git a/test/test_run_transaction_core.py b/test/test_run_transaction_core.py index 1627dc1..c1431b9 100644 --- a/test/test_run_transaction_core.py +++ b/test/test_run_transaction_core.py @@ -3,7 +3,7 @@ from sqlalchemy.testing import fixtures from sqlalchemy.types import Integer import threading -from sqlalchemy.orm import sessionmaker, scoped_session, relationship +from sqlalchemy.orm import sessionmaker, scoped_session from sqlalchemy_cockroachdb import run_transaction @@ -140,7 +140,6 @@ def txn_body(conn): rs = run_transaction(conn, txn_body) assert rs[0] == (1, 100) - def test_run_transaction_retry_with_nested(self): def txn_body(conn): rs = conn.execute(text("select acct, balance from account where acct = 1")) @@ -151,25 +150,22 @@ def txn_body(conn): rs = run_transaction(conn, txn_body, use_cockroach_restart=False) assert rs[0] == (1, 100) - def test_run_chained_transaction(self): def txn_body(conn): # first transaction inserts - conn.execute( - account_table.insert(), [dict(acct=99, balance=100)] - ) + conn.execute(account_table.insert(), [dict(acct=99, balance=100)]) conn.execute(text("select crdb_internal.force_retry('1s')")) def _get_val(s): rs = s.execute(text("select acct, balance from account where acct = 99")) return [r for r in rs] - # chain the get into a separate nested transaction, so that the value + # chain the get into a separate nested transaction, so that the value # in the previous nested transaction is flushed and available - return ChainTransaction([lambda s : _get_val(s), lambda s : _get_val(s)]) + return ChainTransaction([lambda s: _get_val(s), lambda s: _get_val(s)]) with testing.db.connect() as conn: rs = run_transaction(conn, txn_body, use_cockroach_restart=False) assert len(rs.results) == 2 - assert rs.results[0][0] == (99,100) - assert rs.results[1][0] == (99,100) + assert rs.results[0][0] == (99, 100) + assert rs.results[1][0] == (99, 100) From 95c2346ef3530bc19b528d86af850ac4c3680c55 Mon Sep 17 00:00:00 2001 From: Gord Thompson Date: Mon, 9 Jun 2025 09:38:26 -0600 Subject: [PATCH 3/4] Remove items not applicable to project --- .github/workflows/ci.yml | 3 +- poetry.lock | 640 --------------------------------------- pyproject.toml | 40 --- tox.ini | 1 - 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[tool.pytest.ini_options] addopts = "--tb native -v -r sfxX --maxfail=250 -p warnings -p logging --strict-markers" markers = [ diff --git a/tox.ini b/tox.ini index 7d37096..a7c991b 100644 --- a/tox.ini +++ b/tox.ini @@ -2,7 +2,6 @@ # We do not currently test with pypy because psycopg2 does not work there. envlist = py39 - py312 lint [testenv] From 4e86f5ae6ebde309fa615ca8d3f1f41cd9966db6 Mon Sep 17 00:00:00 2001 From: Gord Thompson Date: Tue, 10 Jun 2025 06:21:25 -0600 Subject: [PATCH 4/4] Update CHANGES.md --- CHANGES.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGES.md b/CHANGES.md index 126413c..3de60cd 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -6,7 +6,7 @@ Unreleased - Add column comment to get_columns method (#253), thanks to @dotan-mor - Fix autogenerate with ON UPDATE / DELETE (#258, #262), thanks to @idumitrescu-dn - Improve support for table/column comments (via SQLA 2.0.36) - +- Add nested transaction support (#267), thanks to @mfmarche # Version 2.0.2 January 10, 2023