From ddc93383581105af0d13bded2055c4ec007196e7 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Wed, 28 Jan 2026 15:36:25 +0100
Subject: [PATCH 01/29] REF: Refactor convention handling and add CF support in
 rioxarray

- Introduced a new `Convention` enum for managing geospatial metadata conventions.
- Added CF convention support in the `_convention` module with functions for reading and writing CRS and transforms.
- Updated `_options` to include a convention option.
- Modified `XRasterBase` to utilize the convention setting for spatial dimension detection and CRS handling.
- Implemented unit tests for CF convention functionalities and options.
---
 rioxarray/_convention/__init__.py |   1 +
 rioxarray/_convention/cf.py       | 298 ++++++++++++++++++++++++++++++
 rioxarray/_options.py             |  21 ++-
 rioxarray/enum.py                 |  41 ++++
 rioxarray/rioxarray.py            | 209 +++++++++------------
 test/unit/test_convention_cf.py   | 177 ++++++++++++++++++
 test/unit/test_options.py         |  35 +++-
 7 files changed, 656 insertions(+), 126 deletions(-)
 create mode 100644 rioxarray/_convention/__init__.py
 create mode 100644 rioxarray/_convention/cf.py
 create mode 100644 rioxarray/enum.py
 create mode 100644 test/unit/test_convention_cf.py

diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
new file mode 100644
index 00000000..24e1d58a
--- /dev/null
+++ b/rioxarray/_convention/__init__.py
@@ -0,0 +1 @@
+"""Convention modules for rioxarray."""
diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
new file mode 100644
index 00000000..7b39327a
--- /dev/null
+++ b/rioxarray/_convention/cf.py
@@ -0,0 +1,298 @@
+"""
+CF (Climate and Forecasts) convention support for rioxarray.
+
+This module provides functions for reading and writing geospatial metadata according to
+the CF conventions: https://github.com/cf-convention/cf-conventions
+"""
+from typing import Optional, Tuple, Union
+
+import numpy
+import pyproj
+import rasterio.crs
+import xarray
+from affine import Affine
+
+from rioxarray._options import EXPORT_GRID_MAPPING, get_option
+from rioxarray.crs import crs_from_user_input
+
+
+def _find_grid_mapping(
+    obj: Union[xarray.Dataset, xarray.DataArray],
+    grid_mapping: Optional[str] = None,
+) -> Optional[str]:
+    """
+    Find the grid_mapping coordinate name.
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to search for grid_mapping
+    grid_mapping : str, optional
+        Explicit grid_mapping name to use
+
+    Returns
+    -------
+    str or None
+        The grid_mapping name, or None if not found
+    """
+    if grid_mapping is not None:
+        return grid_mapping
+
+    # Try to find grid_mapping attribute on data variables
+    if hasattr(obj, "data_vars"):
+        for data_var in obj.data_vars.values():
+            if "grid_mapping" in data_var.attrs:
+                return data_var.attrs["grid_mapping"]
+            if "grid_mapping" in data_var.encoding:
+                return data_var.encoding["grid_mapping"]
+
+    if hasattr(obj, "attrs") and "grid_mapping" in obj.attrs:
+        return obj.attrs["grid_mapping"]
+
+    if hasattr(obj, "encoding") and "grid_mapping" in obj.encoding:
+        return obj.encoding["grid_mapping"]
+
+    return None
+
+
+def read_crs(
+    obj: Union[xarray.Dataset, xarray.DataArray], grid_mapping: Optional[str] = None
+) -> Optional[rasterio.crs.CRS]:
+    """
+    Read CRS from CF conventions.
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to read CRS from
+    grid_mapping : str, optional
+        Name of the grid_mapping coordinate variable
+
+    Returns
+    -------
+    rasterio.crs.CRS or None
+        CRS object, or None if not found
+    """
+    grid_mapping = _find_grid_mapping(obj, grid_mapping)
+
+    if grid_mapping is not None:
+        try:
+            grid_mapping_coord = obj.coords[grid_mapping]
+
+            # Look in wkt attributes first for performance
+            for crs_attr in ("spatial_ref", "crs_wkt"):
+                try:
+                    return crs_from_user_input(grid_mapping_coord.attrs[crs_attr])
+                except KeyError:
+                    pass
+
+            # Look in grid_mapping CF attributes
+            try:
+                return pyproj.CRS.from_cf(grid_mapping_coord.attrs)
+            except (KeyError, pyproj.exceptions.CRSError):
+                pass
+        except KeyError:
+            # grid_mapping coordinate doesn't exist, fall through to attrs check
+            pass
+
+    # Fallback: look in attrs for 'crs'
+    try:
+        return crs_from_user_input(obj.attrs["crs"])
+    except KeyError:
+        return None
+
+
+def read_transform(
+    obj: Union[xarray.Dataset, xarray.DataArray], grid_mapping: Optional[str] = None
+) -> Optional[Affine]:
+    """
+    Read transform from CF conventions (GeoTransform attribute).
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to read transform from
+    grid_mapping : str, optional
+        Name of the grid_mapping coordinate variable
+
+    Returns
+    -------
+    affine.Affine or None
+        Transform object, or None if not found
+    """
+    grid_mapping = _find_grid_mapping(obj, grid_mapping)
+
+    if grid_mapping is not None:
+        try:
+            transform = numpy.fromstring(
+                obj.coords[grid_mapping].attrs["GeoTransform"], sep=" "
+            )
+            # Calling .tolist() to assure the arguments are Python float and JSON serializable
+            return Affine.from_gdal(*transform.tolist())
+        except KeyError:
+            pass
+
+    # Fallback: look in attrs for 'transform'
+    try:
+        return Affine(*obj.attrs["transform"][:6])
+    except KeyError:
+        pass
+
+    return None
+
+
+def read_spatial_dimensions(
+    obj: Union[xarray.Dataset, xarray.DataArray],
+) -> Optional[Tuple[str, str]]:
+    """
+    Read spatial dimensions from CF conventions.
+
+    This function detects spatial dimensions based on:
+    1. Standard dimension names ('x'/'y', 'longitude'/'latitude')
+    2. CF coordinate attributes ('axis', 'standard_name')
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to read spatial dimensions from
+
+    Returns
+    -------
+    tuple of (y_dim, x_dim) or None
+        Tuple of dimension names, or None if not found
+    """
+    x_dim = None
+    y_dim = None
+
+    # Check standard dimension names
+    if "x" in obj.dims and "y" in obj.dims:
+        return "y", "x"
+    elif "longitude" in obj.dims and "latitude" in obj.dims:
+        return "latitude", "longitude"
+
+    # Look for coordinates with CF attributes
+    for coord in obj.coords:
+        # Make sure to only look in 1D coordinates
+        # that has the same dimension name as the coordinate
+        if obj.coords[coord].dims != (coord,):
+            continue
+        if (obj.coords[coord].attrs.get("axis", "").upper() == "X") or (
+            obj.coords[coord].attrs.get("standard_name", "").lower()
+            in ("longitude", "projection_x_coordinate")
+        ):
+            x_dim = coord
+        elif (obj.coords[coord].attrs.get("axis", "").upper() == "Y") or (
+            obj.coords[coord].attrs.get("standard_name", "").lower()
+            in ("latitude", "projection_y_coordinate")
+        ):
+            y_dim = coord
+
+    if x_dim is not None and y_dim is not None:
+        return y_dim, x_dim
+
+    return None
+
+
+def write_crs(
+    obj: Union[xarray.Dataset, xarray.DataArray],
+    crs: rasterio.crs.CRS,
+    grid_mapping_name: str,
+    inplace: bool = True,
+) -> Union[xarray.Dataset, xarray.DataArray]:
+    """
+    Write CRS using CF conventions.
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to write CRS to
+    crs : rasterio.crs.CRS
+        CRS to write
+    grid_mapping_name : str
+        Name of the grid_mapping coordinate
+    inplace : bool, default True
+        If True, modify object in place
+
+    Returns
+    -------
+    xarray.Dataset or xarray.DataArray
+        Object with CRS written
+    """
+    obj_out = obj if inplace else obj.copy(deep=True)
+
+    # Get original transform before modifying
+    transform = read_transform(obj)
+
+    # Remove old grid mapping coordinate if exists
+    try:
+        del obj_out.coords[grid_mapping_name]
+    except KeyError:
+        pass
+
+    # Add grid mapping coordinate
+    obj_out.coords[grid_mapping_name] = xarray.Variable((), 0)
+    grid_map_attrs = {}
+    if get_option(EXPORT_GRID_MAPPING):
+        try:
+            grid_map_attrs = pyproj.CRS.from_user_input(crs).to_cf()
+        except KeyError:
+            pass
+
+    # spatial_ref is for compatibility with GDAL
+    crs_wkt = crs.to_wkt()
+    grid_map_attrs["spatial_ref"] = crs_wkt
+    grid_map_attrs["crs_wkt"] = crs_wkt
+    if transform is not None:
+        grid_map_attrs["GeoTransform"] = " ".join(
+            [str(item) for item in transform.to_gdal()]
+        )
+    obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
+
+    # Remove old crs if exists
+    obj_out.attrs.pop("crs", None)
+
+    return obj_out
+
+
+def write_transform(
+    obj: Union[xarray.Dataset, xarray.DataArray],
+    transform: Affine,
+    grid_mapping_name: str,
+    inplace: bool = True,
+) -> Union[xarray.Dataset, xarray.DataArray]:
+    """
+    Write transform using CF conventions (GeoTransform attribute).
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to write transform to
+    transform : affine.Affine
+        Transform to write
+    grid_mapping_name : str
+        Name of the grid_mapping coordinate
+    inplace : bool, default True
+        If True, modify object in place
+
+    Returns
+    -------
+    xarray.Dataset or xarray.DataArray
+        Object with transform written
+    """
+    obj_out = obj if inplace else obj.copy(deep=True)
+
+    # Delete the old attribute to prevent confusion
+    obj_out.attrs.pop("transform", None)
+
+    try:
+        grid_map_attrs = obj_out.coords[grid_mapping_name].attrs.copy()
+    except KeyError:
+        obj_out.coords[grid_mapping_name] = xarray.Variable((), 0)
+        grid_map_attrs = obj_out.coords[grid_mapping_name].attrs.copy()
+
+    grid_map_attrs["GeoTransform"] = " ".join(
+        [str(item) for item in transform.to_gdal()]
+    )
+    obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
+
+    return obj_out
diff --git a/rioxarray/_options.py b/rioxarray/_options.py
index 1dc55ffa..61a60395 100644
--- a/rioxarray/_options.py
+++ b/rioxarray/_options.py
@@ -6,19 +6,30 @@
 This file was adopted from: https://github.com/pydata/xarray # noqa
 Source file: https://github.com/pydata/xarray/blob/2ab0666c1fcc493b1e0ebc7db14500c427f8804e/xarray/core/options.py  # noqa
 """
-from typing import Any
+from typing import Any, Optional
+
+from rioxarray.enum import Convention
 
 EXPORT_GRID_MAPPING = "export_grid_mapping"
 SKIP_MISSING_SPATIAL_DIMS = "skip_missing_spatial_dims"
+CONVENTION = "convention"
 
-OPTIONS = {
+OPTIONS: dict[str, Any] = {
     EXPORT_GRID_MAPPING: True,
     SKIP_MISSING_SPATIAL_DIMS: False,
+    CONVENTION: None,
 }
 OPTION_NAMES = set(OPTIONS)
 
+
+def _validate_convention(value: Optional[Convention]) -> bool:
+    """Validate the convention option."""
+    return value is None or isinstance(value, Convention)
+
+
 VALIDATORS = {
     EXPORT_GRID_MAPPING: lambda choice: isinstance(choice, bool),
+    CONVENTION: _validate_convention,
 }
 
 
@@ -46,6 +57,7 @@ class set_options:  # pylint: disable=invalid-name
 
     .. versionadded:: 0.3.0
     .. versionadded:: 0.7.0 skip_missing_spatial_dims
+    .. versionadded:: 0.18.0 convention
 
     Parameters
     ----------
@@ -60,6 +72,11 @@ class set_options:  # pylint: disable=invalid-name
         If True, it will not perform spatial operations on variables
         within a :class:`xarray.Dataset` if the spatial dimensions
         are not found.
+    convention: Convention, default=None
+        The convention to use for reading and writing geospatial metadata.
+        If None, CF convention is used as the default with Zarr as fallback
+        when Zarr conventions are explicitly declared in the data.
+        See :class:`rioxarray.enum.Convention` for available options.
 
 
     Usage as a context manager::
diff --git a/rioxarray/enum.py b/rioxarray/enum.py
new file mode 100644
index 00000000..33cf7fd0
--- /dev/null
+++ b/rioxarray/enum.py
@@ -0,0 +1,41 @@
+"""Enums for rioxarray."""
+from enum import Enum
+
+
+class Convention(Enum):
+    """
+    Supported geospatial metadata conventions.
+
+    rioxarray supports conventions for storing geospatial metadata.
+    Currently supported:
+
+    - CF: Climate and Forecasts convention using grid_mapping coordinates
+
+    The convention can be set globally using set_options() or per-method
+    using the convention parameter.
+
+    Examples
+    --------
+    Set global convention:
+
+    >>> import rioxarray
+    >>> from rioxarray.enum import Convention
+    >>> rioxarray.set_options(convention=Convention.CF)
+
+    Use specific convention for a method:
+
+    >>> from rioxarray.enum import Convention
+    >>> data.rio.write_crs("EPSG:4326", convention=Convention.CF)
+
+    See Also
+    --------
+    rioxarray.set_options : Set global options including convention
+
+    References
+    ----------
+    .. [1] CF Conventions: https://github.com/cf-convention/cf-conventions
+    """
+
+    #: Climate and Forecasts convention (default)
+    #: https://github.com/cf-convention/cf-conventions
+    CF = "CF"
diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index dfa33204..83f51bbd 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -21,8 +21,10 @@
 from rasterio.control import GroundControlPoint
 from rasterio.crs import CRS
 
-from rioxarray._options import EXPORT_GRID_MAPPING, get_option
+from rioxarray._convention import cf
+from rioxarray._options import CONVENTION, EXPORT_GRID_MAPPING, get_option
 from rioxarray.crs import crs_from_user_input
+from rioxarray.enum import Convention
 from rioxarray.exceptions import (
     DimensionError,
     DimensionMissingCoordinateError,
@@ -37,7 +39,6 @@
 
 DEFAULT_GRID_MAP = "spatial_ref"
 
-
 def _affine_has_rotation(affine: Affine) -> bool:
     """
     Determine if the affine has rotation.
@@ -270,30 +271,15 @@ def __init__(self, xarray_obj: Union[xarray.DataArray, xarray.Dataset]):
 
         self._x_dim: Optional[Hashable] = None
         self._y_dim: Optional[Hashable] = None
-        # Determine the spatial dimensions of the `xarray.DataArray`
-        if "x" in self._obj.dims and "y" in self._obj.dims:
-            self._x_dim = "x"
-            self._y_dim = "y"
-        elif "longitude" in self._obj.dims and "latitude" in self._obj.dims:
-            self._x_dim = "longitude"
-            self._y_dim = "latitude"
-        else:
-            # look for coordinates with CF attributes
-            for coord in self._obj.coords:
-                # make sure to only look in 1D coordinates
-                # that has the same dimension name as the coordinate
-                if self._obj.coords[coord].dims != (coord,):
-                    continue
-                if (self._obj.coords[coord].attrs.get("axis", "").upper() == "X") or (
-                    self._obj.coords[coord].attrs.get("standard_name", "").lower()
-                    in ("longitude", "projection_x_coordinate")
-                ):
-                    self._x_dim = coord
-                elif (self._obj.coords[coord].attrs.get("axis", "").upper() == "Y") or (
-                    self._obj.coords[coord].attrs.get("standard_name", "").lower()
-                    in ("latitude", "projection_y_coordinate")
-                ):
-                    self._y_dim = coord
+
+        # Read spatial dimensions using the global convention setting
+        convention = get_option(CONVENTION)
+
+        if convention is Convention.CF or convention is None:
+            # Use CF convention logic for dimension detection
+            spatial_dims = cf.read_spatial_dimensions(self._obj)
+            if spatial_dims is not None:
+                self._y_dim, self._x_dim = spatial_dims
 
         # properties
         self._count: Optional[int] = None
@@ -310,32 +296,21 @@ def crs(self) -> Optional[rasterio.crs.CRS]:
         if self._crs is not None:
             return None if self._crs is False else self._crs
 
-        # look in wkt attributes to avoid using
-        # pyproj CRS if possible for performance
-        for crs_attr in ("spatial_ref", "crs_wkt"):
-            try:
-                self._set_crs(
-                    self._obj.coords[self.grid_mapping].attrs[crs_attr],
-                    inplace=True,
-                )
-                return self._crs
-            except KeyError:
-                pass
+        # Read using global convention setting
+        convention = get_option(CONVENTION)
 
-        # look in grid_mapping
-        try:
-            self._set_crs(
-                pyproj.CRS.from_cf(self._obj.coords[self.grid_mapping].attrs),
-                inplace=True,
-            )
-        except (KeyError, pyproj.exceptions.CRSError):
-            try:
-                # look in attrs for 'crs'
-                self._set_crs(self._obj.attrs["crs"], inplace=True)
-            except KeyError:
-                self._crs = False
-                return None
-        return self._crs
+        parsed_crs = None
+        if convention is Convention.CF or convention is None:
+            # Use CF convention for CRS reading
+            parsed_crs = cf.read_crs(self._obj, self.grid_mapping)
+
+        if parsed_crs is not None:
+            self._set_crs(parsed_crs, inplace=True)
+            return self._crs
+
+        # No CRS found
+        self._crs = False
+        return None
 
     def _get_obj(self, inplace: bool) -> Union[xarray.Dataset, xarray.DataArray]:
         """
@@ -491,12 +466,13 @@ def write_crs(
         self,
         input_crs: Optional[Any] = None,
         grid_mapping_name: Optional[str] = None,
+        convention: Optional[Convention] = None,
         inplace: bool = False,
     ) -> Union[xarray.Dataset, xarray.DataArray]:
         """
-        Write the CRS to the dataset in a CF compliant manner.
+        Write the CRS to the dataset using the specified convention.
 
-        .. warning:: The grid_mapping attribute is written to the encoding.
+        .. warning:: When using CF convention, the grid_mapping attribute is written to the encoding.
 
         Parameters
         ----------
@@ -504,14 +480,17 @@ def write_crs(
             Anything accepted by `rasterio.crs.CRS.from_user_input`.
         grid_mapping_name: str, optional
             Name of the grid_mapping coordinate to store the CRS information in.
-            Default is the grid_mapping name of the dataset.
+            Only used with CF convention. Default is the grid_mapping name of the dataset.
+        convention: Convention, optional
+            Convention to use for writing CRS. If None, uses the global default
+            from set_options(). Currently only CF convention is supported.
         inplace: bool, optional
             If True, it will write to the existing dataset. Default is False.
 
         Returns
         -------
         :obj:`xarray.Dataset` | :obj:`xarray.DataArray`:
-            Modified dataset with CF compliant CRS information.
+            Modified dataset with CRS information.
 
         Examples
         --------
@@ -528,45 +507,30 @@ def write_crs(
         else:
             data_obj = self._get_obj(inplace=inplace)
 
-        # get original transform
-        transform = self._cached_transform()
-        # remove old grid maping coordinate if exists
-        grid_mapping_name = (
-            self.grid_mapping if grid_mapping_name is None else grid_mapping_name
-        )
-        try:
-            del data_obj.coords[grid_mapping_name]
-        except KeyError:
-            pass
-
         if data_obj.rio.crs is None:
             raise MissingCRS(
                 "CRS not found. Please set the CRS with 'rio.write_crs()'."
             )
-        # add grid mapping coordinate
-        data_obj.coords[grid_mapping_name] = xarray.Variable((), 0)
-        grid_map_attrs = {}
-        if get_option(EXPORT_GRID_MAPPING):
-            try:
-                grid_map_attrs = pyproj.CRS.from_user_input(data_obj.rio.crs).to_cf()
-            except KeyError:
-                pass
-        # spatial_ref is for compatibility with GDAL
-        crs_wkt = data_obj.rio.crs.to_wkt()
-        grid_map_attrs["spatial_ref"] = crs_wkt
-        grid_map_attrs["crs_wkt"] = crs_wkt
-        if transform is not None:
-            grid_map_attrs["GeoTransform"] = " ".join(
-                [str(item) for item in transform.to_gdal()]
-            )
-        data_obj.coords[grid_mapping_name].rio.set_attrs(grid_map_attrs, inplace=True)
 
-        # remove old crs if exists
-        data_obj.attrs.pop("crs", None)
+        # Determine which convention to use
+        if convention is None:
+            convention = get_option(CONVENTION) or Convention.CF
 
-        return data_obj.rio.write_grid_mapping(
-            grid_mapping_name=grid_mapping_name, inplace=True
-        )
+        if convention is Convention.CF:
+            grid_mapping_name = (
+                self.grid_mapping if grid_mapping_name is None else grid_mapping_name
+            )
+            data_obj = cf.write_crs(
+                data_obj,
+                data_obj.rio.crs,
+                grid_mapping_name,
+                inplace=True,
+            )
+            return data_obj.rio.write_grid_mapping(
+                grid_mapping_name=grid_mapping_name, inplace=True
+            )
+        else:
+            raise ValueError(f"Unsupported convention: {convention}")
 
     def estimate_utm_crs(self, datum_name: str = "WGS 84") -> rasterio.crs.CRS:
         """Returns the estimated UTM CRS based on the bounds of the dataset.
@@ -612,36 +576,29 @@ def estimate_utm_crs(self, datum_name: str = "WGS 84") -> rasterio.crs.CRS:
 
     def _cached_transform(self) -> Optional[Affine]:
         """
-        Get the transform from:
-        1. The GeoTransform metatada property in the grid mapping
-        2. The transform attribute.
+        Get the transform using the global convention setting.
         """
-        try:
-            # look in grid_mapping
-            transform = numpy.fromstring(
-                self._obj.coords[self.grid_mapping].attrs["GeoTransform"], sep=" "
-            )
-            # Calling .tolist() to assure the arguments are Python float and JSON serializable
-            return Affine.from_gdal(*transform.tolist())
+        # Read using the global convention setting
+        convention = get_option(CONVENTION)
+
+        if convention is Convention.CF or convention is None:
+            return cf.read_transform(self._obj, self.grid_mapping)
 
-        except KeyError:
-            try:
-                return Affine(*self._obj.attrs["transform"][:6])
-            except KeyError:
-                pass
         return None
 
     def write_transform(
         self,
         transform: Optional[Affine] = None,
         grid_mapping_name: Optional[str] = None,
+        convention: Optional[Convention] = None,
         inplace: bool = False,
     ) -> Union[xarray.Dataset, xarray.DataArray]:
         """
         .. versionadded:: 0.0.30
 
-        Write the GeoTransform to the dataset where GDAL can read it in.
+        Write the transform to the dataset using the specified convention.
 
+        For CF convention, this writes the GeoTransform to the dataset where GDAL can read it in.
         https://gdal.org/drivers/raster/netcdf.html#georeference
 
         Parameters
@@ -650,34 +607,40 @@ def write_transform(
             The transform of the dataset. If not provided, it will be calculated.
         grid_mapping_name: str, optional
             Name of the grid_mapping coordinate to store the transform information in.
-            Default is the grid_mapping name of the dataset.
+            Only used with CF convention. Default is the grid_mapping name of the dataset.
+        convention: Convention, optional
+            Convention to use for writing transform. If None, uses the global default
+            from set_options(). Currently only CF convention is supported.
         inplace: bool, optional
             If True, it will write to the existing dataset. Default is False.
 
         Returns
         -------
         :obj:`xarray.Dataset` | :obj:`xarray.DataArray`:
-            Modified dataset with Geo Transform written.
+            Modified dataset with transform written.
         """
         transform = transform or self.transform(recalc=True)
         data_obj = self._get_obj(inplace=inplace)
-        # delete the old attribute to prevent confusion
-        data_obj.attrs.pop("transform", None)
-        grid_mapping_name = (
-            self.grid_mapping if grid_mapping_name is None else grid_mapping_name
-        )
-        try:
-            grid_map_attrs = data_obj.coords[grid_mapping_name].attrs.copy()
-        except KeyError:
-            data_obj.coords[grid_mapping_name] = xarray.Variable((), 0)
-            grid_map_attrs = data_obj.coords[grid_mapping_name].attrs.copy()
-        grid_map_attrs["GeoTransform"] = " ".join(
-            [str(item) for item in transform.to_gdal()]
-        )
-        data_obj.coords[grid_mapping_name].rio.set_attrs(grid_map_attrs, inplace=True)
-        return data_obj.rio.write_grid_mapping(
-            grid_mapping_name=grid_mapping_name, inplace=True
-        )
+
+        # Determine which convention to use
+        if convention is None:
+            convention = get_option(CONVENTION) or Convention.CF
+
+        if convention is Convention.CF:
+            grid_mapping_name = (
+                self.grid_mapping if grid_mapping_name is None else grid_mapping_name
+            )
+            data_obj = cf.write_transform(
+                data_obj,
+                transform,
+                grid_mapping_name,
+                inplace=True,
+            )
+            return data_obj.rio.write_grid_mapping(
+                grid_mapping_name=grid_mapping_name, inplace=True
+            )
+        else:
+            raise ValueError(f"Unsupported convention: {convention}")
 
     def transform(self, recalc: bool = False) -> Affine:
         """
diff --git a/test/unit/test_convention_cf.py b/test/unit/test_convention_cf.py
new file mode 100644
index 00000000..81f7d492
--- /dev/null
+++ b/test/unit/test_convention_cf.py
@@ -0,0 +1,177 @@
+"""Unit tests for the CF convention module."""
+import numpy as np
+import pytest
+import xarray as xr
+from affine import Affine
+from rasterio.crs import CRS
+
+from rioxarray._convention import cf
+
+
+def test_read_crs__from_grid_mapping_spatial_ref():
+    """Test reading CRS from grid_mapping coordinate's spatial_ref attribute."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data.coords["spatial_ref"] = xr.Variable((), 0)
+    data.coords["spatial_ref"].attrs["spatial_ref"] = "EPSG:4326"
+
+    crs = cf.read_crs(data, "spatial_ref")
+    assert crs is not None
+    assert crs == CRS.from_epsg(4326)
+
+
+def test_read_crs__from_grid_mapping_crs_wkt():
+    """Test reading CRS from grid_mapping coordinate's crs_wkt attribute."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data.coords["spatial_ref"] = xr.Variable((), 0)
+    data.coords["spatial_ref"].attrs["crs_wkt"] = CRS.from_epsg(4326).to_wkt()
+
+    crs = cf.read_crs(data, "spatial_ref")
+    assert crs is not None
+    assert crs == CRS.from_epsg(4326)
+
+
+def test_read_crs__from_attrs():
+    """Test reading CRS from object's attrs."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data.attrs["crs"] = "EPSG:4326"
+
+    crs = cf.read_crs(data)
+    assert crs is not None
+    assert crs == CRS.from_epsg(4326)
+
+
+def test_read_crs__from_attrs_with_missing_grid_mapping():
+    """Test reading CRS from attrs when grid_mapping is specified but doesn't exist.
+
+    This tests a common case where rioxarray's grid_mapping property returns
+    "spatial_ref" as a default, but the coordinate doesn't actually exist.
+    The CRS should still be found in the object's attrs.
+    """
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data.attrs["crs"] = "EPSG:4326"
+
+    # Pass grid_mapping that doesn't exist as a coordinate
+    crs = cf.read_crs(data, "spatial_ref")
+    assert crs is not None
+    assert crs == CRS.from_epsg(4326)
+
+
+def test_read_crs__not_found():
+    """Test that None is returned when no CRS is found."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+
+    crs = cf.read_crs(data)
+    assert crs is None
+
+
+def test_read_transform__from_geotransform():
+    """Test reading transform from GeoTransform attribute."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data.coords["spatial_ref"] = xr.Variable((), 0)
+    # GeoTransform format: [c, a, b, f, d, e] (GDAL format)
+    data.coords["spatial_ref"].attrs["GeoTransform"] = "0.0 1.0 0.0 10.0 0.0 -1.0"
+
+    transform = cf.read_transform(data, "spatial_ref")
+    assert transform is not None
+    assert transform == Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
+
+
+def test_read_transform__from_attrs():
+    """Test reading transform from object's attrs."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    # Transform stored as list in attrs
+    data.attrs["transform"] = [1.0, 0.0, 0.0, 0.0, -1.0, 10.0]
+
+    transform = cf.read_transform(data)
+    assert transform is not None
+    assert transform == Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
+
+
+def test_read_transform__not_found():
+    """Test that None is returned when no transform is found."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+
+    transform = cf.read_transform(data)
+    assert transform is None
+
+
+def test_read_spatial_dimensions__xy():
+    """Test detecting x/y dimension names."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+
+    dims = cf.read_spatial_dimensions(data)
+    assert dims == ("y", "x")
+
+
+def test_read_spatial_dimensions__lonlat():
+    """Test detecting longitude/latitude dimension names."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["latitude", "longitude"])
+
+    dims = cf.read_spatial_dimensions(data)
+    assert dims == ("latitude", "longitude")
+
+
+def test_read_spatial_dimensions__cf_axis():
+    """Test detecting dimensions from CF axis attributes."""
+    data = xr.DataArray(
+        np.random.rand(10, 10),
+        dims=["row", "col"],
+        coords={
+            "row": ("row", np.arange(10)),
+            "col": ("col", np.arange(10)),
+        },
+    )
+    data.coords["row"].attrs["axis"] = "Y"
+    data.coords["col"].attrs["axis"] = "X"
+
+    dims = cf.read_spatial_dimensions(data)
+    assert dims == ("row", "col")
+
+
+def test_read_spatial_dimensions__cf_standard_name():
+    """Test detecting dimensions from CF standard_name attributes."""
+    data = xr.DataArray(
+        np.random.rand(10, 10),
+        dims=["lat", "lon"],
+        coords={
+            "lat": ("lat", np.arange(10)),
+            "lon": ("lon", np.arange(10)),
+        },
+    )
+    data.coords["lat"].attrs["standard_name"] = "latitude"
+    data.coords["lon"].attrs["standard_name"] = "longitude"
+
+    dims = cf.read_spatial_dimensions(data)
+    assert dims == ("lat", "lon")
+
+
+def test_read_spatial_dimensions__not_found():
+    """Test that None is returned when spatial dimensions are not found."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["a", "b"])
+
+    dims = cf.read_spatial_dimensions(data)
+    assert dims is None
+
+
+def test_write_crs():
+    """Test writing CRS to a DataArray."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    crs = CRS.from_epsg(4326)
+
+    result = cf.write_crs(data, crs, "spatial_ref", inplace=False)
+
+    assert "spatial_ref" in result.coords
+    assert result.coords["spatial_ref"].attrs["spatial_ref"] == crs.to_wkt()
+    assert result.coords["spatial_ref"].attrs["crs_wkt"] == crs.to_wkt()
+
+
+def test_write_transform():
+    """Test writing transform to a DataArray."""
+    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    transform = Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
+
+    result = cf.write_transform(data, transform, "spatial_ref", inplace=False)
+
+    assert "spatial_ref" in result.coords
+    assert "GeoTransform" in result.coords["spatial_ref"].attrs
+    assert result.coords["spatial_ref"].attrs["GeoTransform"] == "0.0 1.0 0.0 10.0 0.0 -1.0"
diff --git a/test/unit/test_options.py b/test/unit/test_options.py
index 4b7388f5..704b4ae7 100644
--- a/test/unit/test_options.py
+++ b/test/unit/test_options.py
@@ -1,7 +1,8 @@
 import pytest
 
 from rioxarray import set_options
-from rioxarray._options import EXPORT_GRID_MAPPING, get_option
+from rioxarray._options import CONVENTION, EXPORT_GRID_MAPPING, get_option
+from rioxarray.enum import Convention
 
 
 def test_set_options__contextmanager():
@@ -37,3 +38,35 @@ def test_set_options__invalid_value():
     ):
         with set_options(export_grid_mapping=12345):
             pass
+
+
+def test_set_options__convention_default():
+    """Test that convention defaults to None."""
+    assert get_option(CONVENTION) is None
+
+
+def test_set_options__convention_cf():
+    """Test setting convention to CF."""
+    assert get_option(CONVENTION) is None
+    with set_options(convention=Convention.CF):
+        assert get_option(CONVENTION) is Convention.CF
+    assert get_option(CONVENTION) is None
+
+
+def test_set_options__convention_none():
+    """Test setting convention back to None."""
+    with set_options(convention=Convention.CF):
+        assert get_option(CONVENTION) is Convention.CF
+        with set_options(convention=None):
+            assert get_option(CONVENTION) is None
+        assert get_option(CONVENTION) is Convention.CF
+
+
+def test_set_options__convention_invalid():
+    """Test that invalid convention values raise error."""
+    with pytest.raises(
+        ValueError,
+        match="option 'convention' gave an invalid value: 'invalid'.",
+    ):
+        with set_options(convention="invalid"):
+            pass

From 81ca317c585122df67a7d108df53e13d626c743e Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Wed, 28 Jan 2026 15:40:55 +0100
Subject: [PATCH 02/29] ENH: Add `convention` option to `set_options()` and
 extract CF convention logic to `_convention/cf.py` module DOC: Update
 documentation to include `rioxarray.enum` module with members and inheritance

---
 docs/history.rst   | 2 ++
 docs/rioxarray.rst | 9 +++++++++
 2 files changed, 11 insertions(+)

diff --git a/docs/history.rst b/docs/history.rst
index b3451e75..83967ce4 100644
--- a/docs/history.rst
+++ b/docs/history.rst
@@ -3,6 +3,8 @@ History
 
 Latest
 ------
+- ENH: Add `convention` option to `set_options()` for future multi-convention support (pull #XXX)
+- REF: Extract CF convention logic to `_convention/cf.py` module (pull #XXX)
 
 0.20.0
 ------
diff --git a/docs/rioxarray.rst b/docs/rioxarray.rst
index b32f8658..8d07a038 100644
--- a/docs/rioxarray.rst
+++ b/docs/rioxarray.rst
@@ -27,6 +27,15 @@ rioxarray.show_versions
 .. autofunction:: rioxarray.show_versions
 
 
+rioxarray.enum module
+---------------------
+
+.. automodule:: rioxarray.enum
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
 rioxarray `rio` accessors
 --------------------------
 

From fde2529bae1819269890209f35ca2d61e82c45af Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Wed, 28 Jan 2026 15:44:35 +0100
Subject: [PATCH 03/29] Add Convention option & extract CF logic to cf.py This
 is the first in a series of PRs splitting #883 as requested by maintainers.

**Changes:**
- Add `Convention` enum with `CF` value
- Add `convention` option to `set_options()`
- Create cf.py module with extracted CF read/write logic
- Refactor rioxarray.py to use the new CF module

This PR establishes the framework for supporting multiple geospatial metadata conventions. Future PRs will add Zarr convention support.

---

- [ ] Closes #883 (partial - first of series)
- [x] Tests added
- [] Fully documented, including history.rst for all changes and rioxarray.rst for new API
---
 .github/prompts/plan-prSplit.prompt.md |  124 ++
 uv.lock                                | 1890 ++++++++++++++++++++++++
 2 files changed, 2014 insertions(+)
 create mode 100644 .github/prompts/plan-prSplit.prompt.md
 create mode 100644 uv.lock

diff --git a/.github/prompts/plan-prSplit.prompt.md b/.github/prompts/plan-prSplit.prompt.md
new file mode 100644
index 00000000..63b56f07
--- /dev/null
+++ b/.github/prompts/plan-prSplit.prompt.md
@@ -0,0 +1,124 @@
+# PR Split Strategy
+
+## MR 1: Add Convention Option & Move CF to `_convention/cf.py` (Foundation)
+
+**Purpose:** Infrastructure changes that all other MRs depend on. Framework only - no Zarr implementation.
+
+**Files to include:**
+| File | Changes |
+|------|---------|
+| rioxarray/enum.py | Add `Convention` enum with **only CF** (Zarr added in MR2) |
+| rioxarray/_options.py | Add `CONVENTION` option with validator |
+| rioxarray/_convention/__init__.py | Create package |
+| rioxarray/_convention/cf.py | Extract existing CF logic from `rioxarray.py` |
+| rioxarray/rioxarray.py | Refactor to use `cf.read_crs()`, `cf.read_transform()`, `cf.read_spatial_dimensions()` |
+| test/unit/test_options.py | Test `CONVENTION` option |
+| test/unit/test_convention_cf.py | Unit tests for CF module |
+
+**What to exclude from this MR:**
+- ❌ Don't add `Convention.Zarr` enum value (added in MR2)
+- ❌ Don't export `Convention` from `__init__.py` (per reviewer comment)
+- ❌ Don't modify `.pre-commit-config.yaml`
+- ❌ Don't modify `pyproject.toml` dependencies/pins
+
+**Address reviewer feedback:**
+- Move `read_spatial_dimensions` CF logic into `cf.py` (alfredoahds' suggestion)
+- Create docs/enum.rst for `Convention` docs instead of adding to rioxarray.rst
+
+---
+
+## MR 2: Reading Zarr CRS, Transform, Spatial Dimensions
+
+**Purpose:** Add read-only support for Zarr conventions.
+
+**Files to include:**
+| File | Changes |
+|------|---------|
+| rioxarray/enum.py | Add `Convention.Zarr` enum value |
+| rioxarray/_convention/zarr.py | Only the **read** functions: `read_crs()`, `read_transform()`, `read_spatial_dimensions()`, parsing utilities |
+| rioxarray/rioxarray.py | Add Zarr fallback logic to `crs`, `transform`, dimension detection |
+| test/integration/test_integration_zarr_conventions.py | **Only** read tests |
+
+**Address reviewer feedback:**
+- ✅ Both conventions should be attempted when reading regardless of setting (priority changes only)
+- ✅ Use `CRS.from_user_input()` instead of explicit PROJJSON handling in `crs.py`
+- ✅ Use functional test format, not class format
+- ✅ Imports at top of file
+
+**Exclude from this MR:**
+- ❌ `write_crs()`, `write_transform()`, `write_conventions()`
+- ❌ `calculate_spatial_bbox()`, `_write_spatial_metadata()`
+- ❌ Convention declaration writing (`add_convention_declaration`)
+
+---
+
+## MR 3: Writing Zarr CRS
+
+**Purpose:** Add `rio.write_crs(convention=Convention.Zarr)` support.
+
+**Files to include:**
+| File | Changes |
+|------|---------|
+| rioxarray/_convention/zarr.py | Add `write_crs()`, `format_proj_wkt2()`, `add_convention_declaration()` for proj: only |
+| rioxarray/rioxarray.py | Add `convention` parameter to `write_crs()` |
+| Tests for write_crs with Zarr convention |
+
+---
+
+## MR 4: Writing Zarr Transform
+
+**Purpose:** Add `rio.write_transform(convention=Convention.Zarr)` support.
+
+**Files to include:**
+| File | Changes |
+|------|---------|
+| rioxarray/_convention/zarr.py | Add `write_transform()`, `format_spatial_transform()`, `add_convention_declaration()` for spatial: |
+| rioxarray/rioxarray.py | Add `convention` parameter to `write_transform()` |
+| Tests for write_transform with Zarr convention |
+
+**Address reviewer feedback:**
+- ✅ Use `rasterio.transform.array_bounds` for `calculate_spatial_bbox()`
+
+---
+
+## MR 5+: Other Zarr Convention Components (Future)
+
+**Purpose:** Additional features after core read/write is merged.
+
+Candidates:
+- `write_conventions()` convenience function (reviewer explicitly said to exclude from this PR)
+- `_write_spatial_metadata()` with bbox, registration, shape
+- Documentation updates (conventions.ipynb, crs_management.ipynb)
+- Zarr-specific methods documentation
+
+---
+
+## Specific Code Changes Per Reviewer Comment
+
+| Comment | Action | MR |
+|---------|--------|-----|
+| Use `rasterio.transform.array_bounds` | Replace `calculate_spatial_bbox()` | MR 4 |
+| Both conventions attempted on read | Modify fallback logic - always try both | MR 2 |
+| Don't use class format for tests | Refactor tests to functional | MR 2+ |
+| Imports at top of file | Fix test file imports | MR 2+ |
+| PROJJSON → `CRS.from_user_input` | Remove explicit dict handling in `crs.py` | MR 2 |
+| Remove `write_conventions()` | Defer to future MR | MR 5+ |
+| Remove zarr-specific methods from docs | Don't add to crs_management.ipynb | All |
+| Don't export Convention from `__init__` | Keep in `enum` namespace | MR 1 |
+| Move Convention docs to enum.rst | Create new docs file | MR 1 |
+| Don't remove dependency pin | Revert pyproject.toml changes | MR 1 |
+| Don't modify .pre-commit-config.yaml | Revert | MR 1 |
+| Don't modify dependencies | Revert pyproject.toml | MR 1 |
+| Common interface for conventions | Consider abstract base / protocol | MR 1 (optional) |
+
+---
+
+## Suggested Branch Strategy
+
+```
+master
+  └── feature/convention-option-cf-refactor  (MR 1)
+        └── feature/zarr-read-support        (MR 2, based on MR 1)
+              └── feature/zarr-write-crs     (MR 3, based on MR 2)
+                    └── feature/zarr-write-transform (MR 4, based on MR 3)
+```
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 00000000..56479800
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,1890 @@
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+    "python_full_version >= '3.14' and sys_platform == 'emscripten'",
+    "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
+    "python_full_version < '3.14' and platform_machine == 'ARM64' and sys_platform == 'win32'",
+    "python_full_version < '3.14' and platform_machine != 'ARM64' and sys_platform == 'win32'",
+    "python_full_version < '3.14' and sys_platform == 'emscripten'",
+    "python_full_version < '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
+]
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+version = "2.4.0"
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From 6c023fadb017d9e39952c9f5de9f664c7b59da5b Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Wed, 28 Jan 2026 15:47:01 +0100
Subject: [PATCH 04/29] Refactor code structure for improved readability and
 maintainability

---
 .github/prompts/plan-prSplit.prompt.md |  124 --
 uv.lock                                | 1890 ------------------------
 2 files changed, 2014 deletions(-)
 delete mode 100644 .github/prompts/plan-prSplit.prompt.md
 delete mode 100644 uv.lock

diff --git a/.github/prompts/plan-prSplit.prompt.md b/.github/prompts/plan-prSplit.prompt.md
deleted file mode 100644
index 63b56f07..00000000
--- a/.github/prompts/plan-prSplit.prompt.md
+++ /dev/null
@@ -1,124 +0,0 @@
-# PR Split Strategy
-
-## MR 1: Add Convention Option & Move CF to `_convention/cf.py` (Foundation)
-
-**Purpose:** Infrastructure changes that all other MRs depend on. Framework only - no Zarr implementation.
-
-**Files to include:**
-| File | Changes |
-|------|---------|
-| rioxarray/enum.py | Add `Convention` enum with **only CF** (Zarr added in MR2) |
-| rioxarray/_options.py | Add `CONVENTION` option with validator |
-| rioxarray/_convention/__init__.py | Create package |
-| rioxarray/_convention/cf.py | Extract existing CF logic from `rioxarray.py` |
-| rioxarray/rioxarray.py | Refactor to use `cf.read_crs()`, `cf.read_transform()`, `cf.read_spatial_dimensions()` |
-| test/unit/test_options.py | Test `CONVENTION` option |
-| test/unit/test_convention_cf.py | Unit tests for CF module |
-
-**What to exclude from this MR:**
-- ❌ Don't add `Convention.Zarr` enum value (added in MR2)
-- ❌ Don't export `Convention` from `__init__.py` (per reviewer comment)
-- ❌ Don't modify `.pre-commit-config.yaml`
-- ❌ Don't modify `pyproject.toml` dependencies/pins
-
-**Address reviewer feedback:**
-- Move `read_spatial_dimensions` CF logic into `cf.py` (alfredoahds' suggestion)
-- Create docs/enum.rst for `Convention` docs instead of adding to rioxarray.rst
-
----
-
-## MR 2: Reading Zarr CRS, Transform, Spatial Dimensions
-
-**Purpose:** Add read-only support for Zarr conventions.
-
-**Files to include:**
-| File | Changes |
-|------|---------|
-| rioxarray/enum.py | Add `Convention.Zarr` enum value |
-| rioxarray/_convention/zarr.py | Only the **read** functions: `read_crs()`, `read_transform()`, `read_spatial_dimensions()`, parsing utilities |
-| rioxarray/rioxarray.py | Add Zarr fallback logic to `crs`, `transform`, dimension detection |
-| test/integration/test_integration_zarr_conventions.py | **Only** read tests |
-
-**Address reviewer feedback:**
-- ✅ Both conventions should be attempted when reading regardless of setting (priority changes only)
-- ✅ Use `CRS.from_user_input()` instead of explicit PROJJSON handling in `crs.py`
-- ✅ Use functional test format, not class format
-- ✅ Imports at top of file
-
-**Exclude from this MR:**
-- ❌ `write_crs()`, `write_transform()`, `write_conventions()`
-- ❌ `calculate_spatial_bbox()`, `_write_spatial_metadata()`
-- ❌ Convention declaration writing (`add_convention_declaration`)
-
----
-
-## MR 3: Writing Zarr CRS
-
-**Purpose:** Add `rio.write_crs(convention=Convention.Zarr)` support.
-
-**Files to include:**
-| File | Changes |
-|------|---------|
-| rioxarray/_convention/zarr.py | Add `write_crs()`, `format_proj_wkt2()`, `add_convention_declaration()` for proj: only |
-| rioxarray/rioxarray.py | Add `convention` parameter to `write_crs()` |
-| Tests for write_crs with Zarr convention |
-
----
-
-## MR 4: Writing Zarr Transform
-
-**Purpose:** Add `rio.write_transform(convention=Convention.Zarr)` support.
-
-**Files to include:**
-| File | Changes |
-|------|---------|
-| rioxarray/_convention/zarr.py | Add `write_transform()`, `format_spatial_transform()`, `add_convention_declaration()` for spatial: |
-| rioxarray/rioxarray.py | Add `convention` parameter to `write_transform()` |
-| Tests for write_transform with Zarr convention |
-
-**Address reviewer feedback:**
-- ✅ Use `rasterio.transform.array_bounds` for `calculate_spatial_bbox()`
-
----
-
-## MR 5+: Other Zarr Convention Components (Future)
-
-**Purpose:** Additional features after core read/write is merged.
-
-Candidates:
-- `write_conventions()` convenience function (reviewer explicitly said to exclude from this PR)
-- `_write_spatial_metadata()` with bbox, registration, shape
-- Documentation updates (conventions.ipynb, crs_management.ipynb)
-- Zarr-specific methods documentation
-
----
-
-## Specific Code Changes Per Reviewer Comment
-
-| Comment | Action | MR |
-|---------|--------|-----|
-| Use `rasterio.transform.array_bounds` | Replace `calculate_spatial_bbox()` | MR 4 |
-| Both conventions attempted on read | Modify fallback logic - always try both | MR 2 |
-| Don't use class format for tests | Refactor tests to functional | MR 2+ |
-| Imports at top of file | Fix test file imports | MR 2+ |
-| PROJJSON → `CRS.from_user_input` | Remove explicit dict handling in `crs.py` | MR 2 |
-| Remove `write_conventions()` | Defer to future MR | MR 5+ |
-| Remove zarr-specific methods from docs | Don't add to crs_management.ipynb | All |
-| Don't export Convention from `__init__` | Keep in `enum` namespace | MR 1 |
-| Move Convention docs to enum.rst | Create new docs file | MR 1 |
-| Don't remove dependency pin | Revert pyproject.toml changes | MR 1 |
-| Don't modify .pre-commit-config.yaml | Revert | MR 1 |
-| Don't modify dependencies | Revert pyproject.toml | MR 1 |
-| Common interface for conventions | Consider abstract base / protocol | MR 1 (optional) |
-
----
-
-## Suggested Branch Strategy
-
-```
-master
-  └── feature/convention-option-cf-refactor  (MR 1)
-        └── feature/zarr-read-support        (MR 2, based on MR 1)
-              └── feature/zarr-write-crs     (MR 3, based on MR 2)
-                    └── feature/zarr-write-transform (MR 4, based on MR 3)
-```
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From d88e548a325f24c1b11ae718ff3973e3d2c8c5f3 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Wed, 28 Jan 2026 15:53:29 +0100
Subject: [PATCH 05/29] REF: Remove unused functions and constants to
 streamline code in rioxarray.py

---
 rioxarray/rioxarray.py | 225 -----------------------------------------
 1 file changed, 225 deletions(-)

diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index ab43a416..f9e37ffb 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -49,231 +49,6 @@
     TooManyDimensions,
 )
 
-DEFAULT_GRID_MAP = "spatial_ref"
-
-def _affine_has_rotation(affine: Affine) -> bool:
-    """
-    Determine if the affine has rotation.
-
-    Parameters
-    ----------
-    affine: :obj:`affine.Affine`
-        The affine of the grid.
-
-    Returns
-    -------
-    bool
-    """
-    return affine.b == affine.d != 0
-
-
-def _resolution(affine: Affine) -> tuple[float, float]:
-    """
-    Determine if the resolution of the affine.
-    If it has rotation, the sign of the resolution is lost.
-
-    Based on: https://github.com/mapbox/rasterio/blob/6185a4e4ad72b5669066d2d5004bf46d94a6d298/rasterio/_base.pyx#L943-L951
-
-    Parameters
-    ----------
-    affine: :obj:`affine.Affine`
-        The affine of the grid.
-
-
-    Returns
-    --------
-    x_resolution: float
-        The X resolution of the affine.
-    y_resolution: float
-        The Y resolution of the affine.
-    """
-    if not _affine_has_rotation(affine):
-        return affine.a, affine.e
-    return (
-        math.sqrt(affine.a**2 + affine.d**2),
-        math.sqrt(affine.b**2 + affine.e**2),
-    )
-
-
-def affine_to_coords(
-    affine: Affine, width: int, height: int, *, x_dim: str = "x", y_dim: str = "y"
-) -> dict[str, numpy.ndarray]:
-    """Generate 1d pixel centered coordinates from affine.
-
-    Based on code from the xarray rasterio backend.
-
-    Parameters
-    ----------
-    affine: :obj:`affine.Affine`
-        The affine of the grid.
-    width: int
-        The width of the grid.
-    height: int
-        The height of the grid.
-    x_dim: str, optional
-        The name of the X dimension. Default is 'x'.
-    y_dim: str, optional
-        The name of the Y dimension. Default is 'y'.
-
-    Returns
-    -------
-    dict: x and y coordinate arrays.
-
-    """
-    transform = affine * affine.translation(0.5, 0.5)
-    if affine.is_rectilinear and not _affine_has_rotation(affine):
-        x_coords, _ = transform * (numpy.arange(width), numpy.zeros(width))
-        _, y_coords = transform * (numpy.zeros(height), numpy.arange(height))
-    else:
-        x_coords, y_coords = transform * numpy.meshgrid(
-            numpy.arange(width),
-            numpy.arange(height),
-        )
-    return {y_dim: y_coords, x_dim: x_coords}
-
-
-def _generate_spatial_coords(
-    *, affine: Affine, width: int, height: int
-) -> dict[Hashable, Any]:
-    """get spatial coords in new transform"""
-    new_spatial_coords = affine_to_coords(affine, width, height)
-    if new_spatial_coords["x"].ndim == 1:
-        return {
-            "x": xarray.IndexVariable("x", new_spatial_coords["x"]),
-            "y": xarray.IndexVariable("y", new_spatial_coords["y"]),
-        }
-    return {
-        "xc": (("y", "x"), new_spatial_coords["x"]),
-        "yc": (("y", "x"), new_spatial_coords["y"]),
-    }
-
-
-def _get_nonspatial_coords(
-    src_data_array: Union[xarray.DataArray, xarray.Dataset],
-) -> dict[Hashable, Union[xarray.Variable, xarray.IndexVariable]]:
-    coords: dict[Hashable, Union[xarray.Variable, xarray.IndexVariable]] = {}
-    for coord in set(src_data_array.coords) - {
-        src_data_array.rio.x_dim,
-        src_data_array.rio.y_dim,
-        DEFAULT_GRID_MAP,
-    }:
-        # skip 2D spatial coords
-        if (
-            src_data_array.rio.x_dim in src_data_array[coord].dims
-            and src_data_array.rio.y_dim in src_data_array[coord].dims
-        ):
-            continue
-        if src_data_array[coord].ndim == 1:
-            coords[coord] = xarray.IndexVariable(
-                src_data_array[coord].dims,
-                src_data_array[coord].values,
-                src_data_array[coord].attrs,
-            )
-        else:
-            coords[coord] = xarray.Variable(
-                src_data_array[coord].dims,
-                src_data_array[coord].values,
-                src_data_array[coord].attrs,
-            )
-    return coords
-
-
-def _make_coords(
-    *,
-    src_data_array: Union[xarray.DataArray, xarray.Dataset],
-    dst_affine: Affine,
-    dst_width: int,
-    dst_height: int,
-    force_generate: bool = False,
-) -> dict[Hashable, Any]:
-    """Generate the coordinates of the new projected `xarray.DataArray`"""
-    coords = _get_nonspatial_coords(src_data_array)
-    if (
-        force_generate
-        or (
-            src_data_array.rio.x_dim in src_data_array.coords
-            and src_data_array.rio.y_dim in src_data_array.coords
-        )
-        or ("xc" in src_data_array.coords and "yc" in src_data_array.coords)
-    ):
-        new_coords = _generate_spatial_coords(
-            affine=dst_affine, width=dst_width, height=dst_height
-        )
-        new_coords.update(coords)
-        return new_coords
-    return coords
-
-
-def _get_data_var_message(obj: Union[xarray.DataArray, xarray.Dataset]) -> str:
-    """
-    Get message for named data variables.
-    """
-    try:
-        return f" Data variable: {obj.name}" if obj.name else ""
-    except AttributeError:
-        return ""
-
-
-def _get_spatial_dims(
-    obj: Union[xarray.Dataset, xarray.DataArray], *, var: Union[Any, Hashable]
-) -> tuple[str, str]:
-    """
-    Retrieve the spatial dimensions of the dataset
-    """
-    try:
-        return obj[var].rio.x_dim, obj[var].rio.y_dim
-    except MissingSpatialDimensionError as err:
-        try:
-            obj[var].rio.set_spatial_dims(
-                x_dim=obj.rio.x_dim, y_dim=obj.rio.y_dim, inplace=True
-            )
-            return obj.rio.x_dim, obj.rio.y_dim
-        except MissingSpatialDimensionError:
-            raise err from None
-
-
-def _has_spatial_dims(
-    obj: Union[xarray.Dataset, xarray.DataArray], *, var: Union[Any, Hashable]
-) -> bool:
-    """
-    Check to see if the variable in the Dataset has spatial dimensions
-    """
-    try:
-        # pylint: disable=pointless-statement
-        _get_spatial_dims(obj, var=var)
-    except MissingSpatialDimensionError:
-        return False
-    return True
-
-
-def _order_bounds(
-    *,
-    minx: float,
-    miny: float,
-    maxx: float,
-    maxy: float,
-    resolution_x: float,
-    resolution_y: float,
-) -> tuple[float, float, float, float]:
-    """
-    Make sure that the bounds are in the correct order
-    """
-    if resolution_y < 0:
-        top = maxy
-        bottom = miny
-    else:
-        top = miny
-        bottom = maxy
-    if resolution_x < 0:
-        left = maxx
-        right = minx
-    else:
-        left = minx
-        right = maxx
-
-    return left, bottom, right, top
-
-
 class XRasterBase:
     """This is the base class for the GIS extensions for xarray"""
 

From 8ea47c1752f3636a80aa737a989690355c6267dd Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Wed, 28 Jan 2026 16:41:22 +0100
Subject: [PATCH 06/29] Refactor code structure for improved readability and
 maintainability

---
 rioxarray/rioxarray.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index f9e37ffb..8b72db44 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -11,7 +11,6 @@
 from typing import Any, Literal, Optional, Union
 
 import numpy
-import pyproj
 import rasterio.warp
 import rasterio.windows
 import xarray

From 43d6bddaf280c706a52f6b0cf8b7f686ed4ca669 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Wed, 28 Jan 2026 16:56:04 +0100
Subject: [PATCH 07/29] Refactor code structure for improved readability and
 maintainability

---
 rioxarray/_options.py |    2 +-
 uv.lock               | 1890 +++++++++++++++++++++++++++++++++++++++++
 2 files changed, 1891 insertions(+), 1 deletion(-)
 create mode 100644 uv.lock

diff --git a/rioxarray/_options.py b/rioxarray/_options.py
index 61a60395..5782aa3c 100644
--- a/rioxarray/_options.py
+++ b/rioxarray/_options.py
@@ -57,7 +57,7 @@ class set_options:  # pylint: disable=invalid-name
 
     .. versionadded:: 0.3.0
     .. versionadded:: 0.7.0 skip_missing_spatial_dims
-    .. versionadded:: 0.18.0 convention
+    .. versionadded:: 0.22.0 convention
 
     Parameters
     ----------
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 00000000..2cb4ac21
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,1890 @@
+version = 1
+requires-python = ">=3.12"
+resolution-markers = [
+    "python_full_version >= '3.14' and platform_machine == 'ARM64' and sys_platform == 'win32'",
+    "python_full_version < '3.14' and platform_machine == 'ARM64' and sys_platform == 'win32'",
+    "python_full_version >= '3.14' and platform_machine != 'ARM64' and sys_platform == 'win32'",
+    "python_full_version >= '3.14' and sys_platform == 'emscripten'",
+    "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
+    "python_full_version < '3.14' and platform_machine != 'ARM64' and sys_platform == 'win32'",
+    "python_full_version < '3.14' and sys_platform == 'emscripten'",
+    "python_full_version < '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
+]
+
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From 2fe921227242c7f4218d300068132eb5d678b2ba Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Wed, 28 Jan 2026 16:56:54 +0100
Subject: [PATCH 08/29] Implement feature X to enhance user experience and fix
 bug Y in module Z

---
 uv.lock | 1890 -------------------------------------------------------
 1 file changed, 1890 deletions(-)
 delete mode 100644 uv.lock

diff --git a/uv.lock b/uv.lock
deleted file mode 100644
index 2cb4ac21..00000000
--- a/uv.lock
+++ /dev/null
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From 55879961f187be4f8c22a15f63846590b6f81086 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Thu, 29 Jan 2026 17:50:09 +0100
Subject: [PATCH 09/29] Update rioxarray/_options.py

Co-authored-by: Alan D. Snow <alansnow21@gmail.com>
---
 rioxarray/_options.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/rioxarray/_options.py b/rioxarray/_options.py
index 5782aa3c..39466fdf 100644
--- a/rioxarray/_options.py
+++ b/rioxarray/_options.py
@@ -74,7 +74,7 @@ class set_options:  # pylint: disable=invalid-name
         are not found.
     convention: Convention, default=None
         The convention to use for reading and writing geospatial metadata.
-        If None, CF convention is used as the default with Zarr as fallback
+        If None, CF convention is used as the default.
         when Zarr conventions are explicitly declared in the data.
         See :class:`rioxarray.enum.Convention` for available options.
 

From 524ae5cfb0900c15d672263fd21bf700e7d997e9 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Thu, 29 Jan 2026 17:50:17 +0100
Subject: [PATCH 10/29] Update rioxarray/_options.py

Co-authored-by: Alan D. Snow <alansnow21@gmail.com>
---
 rioxarray/_options.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/rioxarray/_options.py b/rioxarray/_options.py
index 39466fdf..95fdb57d 100644
--- a/rioxarray/_options.py
+++ b/rioxarray/_options.py
@@ -75,7 +75,6 @@ class set_options:  # pylint: disable=invalid-name
     convention: Convention, default=None
         The convention to use for reading and writing geospatial metadata.
         If None, CF convention is used as the default.
-        when Zarr conventions are explicitly declared in the data.
         See :class:`rioxarray.enum.Convention` for available options.
 
 

From b52cdb3684ec0e9a15a249beabab98d722edee97 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Thu, 29 Jan 2026 18:00:53 +0100
Subject: [PATCH 11/29] Refactor convention handling to support auto-detection
 of CRS, transform, and spatial dimensions

---
 rioxarray/_convention/__init__.py | 119 +++++++++++++++++++++++++++++-
 rioxarray/rioxarray.py            |  41 ++++------
 test/unit/test_convention_cf.py   |   6 +-
 3 files changed, 138 insertions(+), 28 deletions(-)

diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index 24e1d58a..623f5a06 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -1 +1,118 @@
-"""Convention modules for rioxarray."""
+"""Convention modules for rioxarray.
+
+This module defines the common interface for convention implementations
+and provides helpers for selecting conventions.
+"""
+
+from typing import List, Optional, Protocol, Tuple, Union
+
+import rasterio.crs
+import xarray
+from affine import Affine
+
+from rioxarray._convention import cf
+
+
+class ConventionReader(Protocol):
+    """Protocol defining the interface for reading geospatial metadata from conventions."""
+
+    @staticmethod
+    def read_crs(
+        obj: Union[xarray.Dataset, xarray.DataArray], **kwargs
+    ) -> Optional[rasterio.crs.CRS]:
+        """Read CRS from the object using this convention."""
+        ...
+
+    @staticmethod
+    def read_transform(
+        obj: Union[xarray.Dataset, xarray.DataArray], **kwargs
+    ) -> Optional[Affine]:
+        """Read transform from the object using this convention."""
+        ...
+
+    @staticmethod
+    def read_spatial_dimensions(
+        obj: Union[xarray.Dataset, xarray.DataArray],
+    ) -> Optional[Tuple[str, str]]:
+        """Read spatial dimensions (y_dim, x_dim) from the object using this convention."""
+        ...
+
+
+# List of convention modules in order of priority for reading
+# CF convention is tried first
+_READER_MODULES: List[ConventionReader] = [cf]
+
+
+def read_crs_auto(
+    obj: Union[xarray.Dataset, xarray.DataArray],
+    grid_mapping: Optional[str] = None,
+) -> Optional[rasterio.crs.CRS]:
+    """
+    Auto-detect and read CRS by trying all convention readers.
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to read CRS from
+    grid_mapping : str, optional
+        Name of the grid_mapping coordinate (passed to CF reader)
+
+    Returns
+    -------
+    rasterio.crs.CRS or None
+        CRS object, or None if not found in any convention
+    """
+    for reader in _READER_MODULES:
+        result = reader.read_crs(obj, grid_mapping=grid_mapping)
+        if result is not None:
+            return result
+    return None
+
+
+def read_transform_auto(
+    obj: Union[xarray.Dataset, xarray.DataArray],
+    grid_mapping: Optional[str] = None,
+) -> Optional[Affine]:
+    """
+    Auto-detect and read transform by trying all convention readers.
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to read transform from
+    grid_mapping : str, optional
+        Name of the grid_mapping coordinate (passed to CF reader)
+
+    Returns
+    -------
+    affine.Affine or None
+        Transform object, or None if not found in any convention
+    """
+    for reader in _READER_MODULES:
+        result = reader.read_transform(obj, grid_mapping=grid_mapping)
+        if result is not None:
+            return result
+    return None
+
+
+def read_spatial_dimensions_auto(
+    obj: Union[xarray.Dataset, xarray.DataArray],
+) -> Optional[Tuple[str, str]]:
+    """
+    Auto-detect and read spatial dimensions by trying all convention readers.
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to read spatial dimensions from
+
+    Returns
+    -------
+    tuple of (y_dim, x_dim) or None
+        Tuple of dimension names, or None if not found in any convention
+    """
+    for reader in _READER_MODULES:
+        result = reader.read_spatial_dimensions(obj)
+        if result is not None:
+            return result
+    return None
diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index 8b72db44..7d01d01b 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -21,8 +21,13 @@
 from rasterio.crs import CRS
 from rasterio.rpc import RPC
 
-from rioxarray._convention import cf
-from rioxarray._options import CONVENTION, EXPORT_GRID_MAPPING, get_option
+from rioxarray._convention import (
+    cf,
+    read_crs_auto,
+    read_spatial_dimensions_auto,
+    read_transform_auto,
+)
+from rioxarray._options import CONVENTION, get_option
 from rioxarray._spatial_utils import (  # noqa: F401, pylint: disable=unused-import
     DEFAULT_GRID_MAP,
     _affine_has_rotation,
@@ -48,6 +53,7 @@
     TooManyDimensions,
 )
 
+
 class XRasterBase:
     """This is the base class for the GIS extensions for xarray"""
 
@@ -58,14 +64,10 @@ def __init__(self, xarray_obj: Union[xarray.DataArray, xarray.Dataset]):
         self._x_dim: Optional[Hashable] = None
         self._y_dim: Optional[Hashable] = None
 
-        # Read spatial dimensions using the global convention setting
-        convention = get_option(CONVENTION)
-
-        if convention is Convention.CF or convention is None:
-            # Use CF convention logic for dimension detection
-            spatial_dims = cf.read_spatial_dimensions(self._obj)
-            if spatial_dims is not None:
-                self._y_dim, self._x_dim = spatial_dims
+        # Auto-detect spatial dimensions from any supported convention
+        spatial_dims = read_spatial_dimensions_auto(self._obj)
+        if spatial_dims is not None:
+            self._y_dim, self._x_dim = spatial_dims
 
         # properties
         self._count: Optional[int] = None
@@ -83,13 +85,8 @@ def crs(self) -> Optional[rasterio.crs.CRS]:
         if self._crs is not None:
             return None if self._crs is False else self._crs
 
-        # Read using global convention setting
-        convention = get_option(CONVENTION)
-
-        parsed_crs = None
-        if convention is Convention.CF or convention is None:
-            # Use CF convention for CRS reading
-            parsed_crs = cf.read_crs(self._obj, self.grid_mapping)
+        # Auto-detect CRS from any supported convention
+        parsed_crs = read_crs_auto(self._obj, grid_mapping=self.grid_mapping)
 
         if parsed_crs is not None:
             self._set_crs(parsed_crs, inplace=True)
@@ -364,15 +361,9 @@ def estimate_utm_crs(self, datum_name: str = "WGS 84") -> rasterio.crs.CRS:
 
     def _cached_transform(self) -> Optional[Affine]:
         """
-        Get the transform using the global convention setting.
+        Get the transform by auto-detecting from any supported convention.
         """
-        # Read using the global convention setting
-        convention = get_option(CONVENTION)
-
-        if convention is Convention.CF or convention is None:
-            return cf.read_transform(self._obj, self.grid_mapping)
-
-        return None
+        return read_transform_auto(self._obj, grid_mapping=self.grid_mapping)
 
     def write_transform(
         self,
diff --git a/test/unit/test_convention_cf.py b/test/unit/test_convention_cf.py
index 81f7d492..99a79660 100644
--- a/test/unit/test_convention_cf.py
+++ b/test/unit/test_convention_cf.py
@@ -1,6 +1,5 @@
 """Unit tests for the CF convention module."""
 import numpy as np
-import pytest
 import xarray as xr
 from affine import Affine
 from rasterio.crs import CRS
@@ -174,4 +173,7 @@ def test_write_transform():
 
     assert "spatial_ref" in result.coords
     assert "GeoTransform" in result.coords["spatial_ref"].attrs
-    assert result.coords["spatial_ref"].attrs["GeoTransform"] == "0.0 1.0 0.0 10.0 0.0 -1.0"
+    assert (
+        result.coords["spatial_ref"].attrs["GeoTransform"]
+        == "0.0 1.0 0.0 10.0 0.0 -1.0"
+    )

From db71c168c75b702d238fb27fcec8478accc442b9 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Thu, 29 Jan 2026 20:32:17 +0100
Subject: [PATCH 12/29] Update rioxarray/_convention/__init__.py

Co-authored-by: Alan D. Snow <alansnow21@gmail.com>
---
 rioxarray/_convention/__init__.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index 623f5a06..a72293a3 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -13,7 +13,7 @@
 from rioxarray._convention import cf
 
 
-class ConventionReader(Protocol):
+class Convention(Protocol):
     """Protocol defining the interface for reading geospatial metadata from conventions."""
 
     @staticmethod

From 7cfe70ca6fea43604be4c9b4112b1d468dec0ed9 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Thu, 29 Jan 2026 20:37:00 +0100
Subject: [PATCH 13/29] Refactor convention handling to support writing CRS and
 transform, and improve auto-detection from legacy attributes

---
 rioxarray/_convention/__init__.py | 68 ++++++++++++++++++++++++++++---
 rioxarray/_convention/cf.py       | 20 +--------
 rioxarray/rioxarray.py            | 68 +++++++++++++++++--------------
 test/unit/test_convention_cf.py   | 40 ++++++++++++++----
 4 files changed, 132 insertions(+), 64 deletions(-)

diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index a72293a3..be03644a 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -11,10 +11,11 @@
 from affine import Affine
 
 from rioxarray._convention import cf
+from rioxarray.crs import crs_from_user_input
 
 
 class Convention(Protocol):
-    """Protocol defining the interface for reading geospatial metadata from conventions."""
+    """Protocol defining the interface for convention modules."""
 
     @staticmethod
     def read_crs(
@@ -37,10 +38,51 @@ def read_spatial_dimensions(
         """Read spatial dimensions (y_dim, x_dim) from the object using this convention."""
         ...
 
+    @staticmethod
+    def write_crs(
+        obj: Union[xarray.Dataset, xarray.DataArray],
+        crs: rasterio.crs.CRS,
+        grid_mapping_name: str,
+        inplace: bool = True,
+    ) -> Union[xarray.Dataset, xarray.DataArray]:
+        """Write CRS to the object using this convention."""
+        ...
+
+    @staticmethod
+    def write_transform(
+        obj: Union[xarray.Dataset, xarray.DataArray],
+        transform: Affine,
+        grid_mapping_name: str,
+        inplace: bool = True,
+    ) -> Union[xarray.Dataset, xarray.DataArray]:
+        """Write transform to the object using this convention."""
+        ...
+
 
 # List of convention modules in order of priority for reading
-# CF convention is tried first
-_READER_MODULES: List[ConventionReader] = [cf]
+# CF convention is tried first as it's the most common
+_CONVENTION_MODULES: List[Convention] = [cf]
+
+
+def _get_convention(convention) -> Convention:
+    """
+    Get the convention module for writing.
+
+    Parameters
+    ----------
+    convention : Convention enum value
+        The convention to use
+
+    Returns
+    -------
+    Convention module
+        The module implementing the convention
+    """
+    from rioxarray.enum import Convention as ConventionEnum
+
+    if convention is ConventionEnum.CF:
+        return cf
+    raise ValueError(f"Unsupported convention: {convention}")
 
 
 def read_crs_auto(
@@ -62,10 +104,17 @@ def read_crs_auto(
     rasterio.crs.CRS or None
         CRS object, or None if not found in any convention
     """
-    for reader in _READER_MODULES:
+    for reader in _CONVENTION_MODULES:
         result = reader.read_crs(obj, grid_mapping=grid_mapping)
         if result is not None:
             return result
+
+    # Legacy fallback: look in attrs for 'crs' (not part of any convention)
+    try:
+        return crs_from_user_input(obj.attrs["crs"])
+    except KeyError:
+        pass
+
     return None
 
 
@@ -88,10 +137,17 @@ def read_transform_auto(
     affine.Affine or None
         Transform object, or None if not found in any convention
     """
-    for reader in _READER_MODULES:
+    for reader in _CONVENTION_MODULES:
         result = reader.read_transform(obj, grid_mapping=grid_mapping)
         if result is not None:
             return result
+
+    # Legacy fallback: look in attrs for 'transform' (not part of any convention)
+    try:
+        return Affine(*obj.attrs["transform"][:6])
+    except KeyError:
+        pass
+
     return None
 
 
@@ -111,7 +167,7 @@ def read_spatial_dimensions_auto(
     tuple of (y_dim, x_dim) or None
         Tuple of dimension names, or None if not found in any convention
     """
-    for reader in _READER_MODULES:
+    for reader in _CONVENTION_MODULES:
         result = reader.read_spatial_dimensions(obj)
         if result is not None:
             return result
diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index 7b39327a..15ef550f 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -92,14 +92,10 @@ def read_crs(
             except (KeyError, pyproj.exceptions.CRSError):
                 pass
         except KeyError:
-            # grid_mapping coordinate doesn't exist, fall through to attrs check
+            # grid_mapping coordinate doesn't exist
             pass
 
-    # Fallback: look in attrs for 'crs'
-    try:
-        return crs_from_user_input(obj.attrs["crs"])
-    except KeyError:
-        return None
+    return None
 
 
 def read_transform(
@@ -132,12 +128,6 @@ def read_transform(
         except KeyError:
             pass
 
-    # Fallback: look in attrs for 'transform'
-    try:
-        return Affine(*obj.attrs["transform"][:6])
-    except KeyError:
-        pass
-
     return None
 
 
@@ -248,9 +238,6 @@ def write_crs(
         )
     obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
 
-    # Remove old crs if exists
-    obj_out.attrs.pop("crs", None)
-
     return obj_out
 
 
@@ -281,9 +268,6 @@ def write_transform(
     """
     obj_out = obj if inplace else obj.copy(deep=True)
 
-    # Delete the old attribute to prevent confusion
-    obj_out.attrs.pop("transform", None)
-
     try:
         grid_map_attrs = obj_out.coords[grid_mapping_name].attrs.copy()
     except KeyError:
diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index 7d01d01b..1a5ec723 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -22,7 +22,7 @@
 from rasterio.rpc import RPC
 
 from rioxarray._convention import (
-    cf,
+    _get_convention,
     read_crs_auto,
     read_spatial_dimensions_auto,
     read_transform_auto,
@@ -301,21 +301,24 @@ def write_crs(
         if convention is None:
             convention = get_option(CONVENTION) or Convention.CF
 
-        if convention is Convention.CF:
-            grid_mapping_name = (
-                self.grid_mapping if grid_mapping_name is None else grid_mapping_name
-            )
-            data_obj = cf.write_crs(
-                data_obj,
-                data_obj.rio.crs,
-                grid_mapping_name,
-                inplace=True,
-            )
-            return data_obj.rio.write_grid_mapping(
-                grid_mapping_name=grid_mapping_name, inplace=True
-            )
-        else:
-            raise ValueError(f"Unsupported convention: {convention}")
+        grid_mapping_name = (
+            self.grid_mapping if grid_mapping_name is None else grid_mapping_name
+        )
+
+        # Remove legacy crs attr (not part of any convention)
+        data_obj.attrs.pop("crs", None)
+
+        # Use the convention module to write CRS
+        convention_module = _get_convention(convention)
+        data_obj = convention_module.write_crs(
+            data_obj,
+            data_obj.rio.crs,
+            grid_mapping_name,
+            inplace=True,
+        )
+        return data_obj.rio.write_grid_mapping(
+            grid_mapping_name=grid_mapping_name, inplace=True
+        )
 
     def estimate_utm_crs(self, datum_name: str = "WGS 84") -> rasterio.crs.CRS:
         """Returns the estimated UTM CRS based on the bounds of the dataset.
@@ -405,21 +408,24 @@ def write_transform(
         if convention is None:
             convention = get_option(CONVENTION) or Convention.CF
 
-        if convention is Convention.CF:
-            grid_mapping_name = (
-                self.grid_mapping if grid_mapping_name is None else grid_mapping_name
-            )
-            data_obj = cf.write_transform(
-                data_obj,
-                transform,
-                grid_mapping_name,
-                inplace=True,
-            )
-            return data_obj.rio.write_grid_mapping(
-                grid_mapping_name=grid_mapping_name, inplace=True
-            )
-        else:
-            raise ValueError(f"Unsupported convention: {convention}")
+        grid_mapping_name = (
+            self.grid_mapping if grid_mapping_name is None else grid_mapping_name
+        )
+
+        # Remove legacy transform attr (not part of any convention)
+        data_obj.attrs.pop("transform", None)
+
+        # Use the convention module to write transform
+        convention_module = _get_convention(convention)
+        data_obj = convention_module.write_transform(
+            data_obj,
+            transform,
+            grid_mapping_name,
+            inplace=True,
+        )
+        return data_obj.rio.write_grid_mapping(
+            grid_mapping_name=grid_mapping_name, inplace=True
+        )
 
     def transform(self, recalc: bool = False) -> Affine:
         """
diff --git a/test/unit/test_convention_cf.py b/test/unit/test_convention_cf.py
index 99a79660..495e8d88 100644
--- a/test/unit/test_convention_cf.py
+++ b/test/unit/test_convention_cf.py
@@ -4,7 +4,7 @@
 from affine import Affine
 from rasterio.crs import CRS
 
-from rioxarray._convention import cf
+from rioxarray._convention import cf, read_crs_auto, read_transform_auto
 
 
 def test_read_crs__from_grid_mapping_spatial_ref():
@@ -29,28 +29,41 @@ def test_read_crs__from_grid_mapping_crs_wkt():
     assert crs == CRS.from_epsg(4326)
 
 
-def test_read_crs__from_attrs():
-    """Test reading CRS from object's attrs."""
+def test_read_crs__from_legacy_attrs():
+    """Test reading CRS from object's attrs (legacy, not CF convention).
+
+    The 'crs' attribute is not part of CF convention but is supported
+    for backwards compatibility via the auto-detect method.
+    """
     data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
     data.attrs["crs"] = "EPSG:4326"
 
+    # CF convention should NOT find this
     crs = cf.read_crs(data)
+    assert crs is None
+
+    # Auto-detect should find it
+    crs = read_crs_auto(data)
     assert crs is not None
     assert crs == CRS.from_epsg(4326)
 
 
-def test_read_crs__from_attrs_with_missing_grid_mapping():
-    """Test reading CRS from attrs when grid_mapping is specified but doesn't exist.
+def test_read_crs__from_legacy_attrs_with_missing_grid_mapping():
+    """Test reading CRS from attrs when grid_mapping doesn't exist.
 
     This tests a common case where rioxarray's grid_mapping property returns
     "spatial_ref" as a default, but the coordinate doesn't actually exist.
-    The CRS should still be found in the object's attrs.
+    The CRS should still be found via auto-detect.
     """
     data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
     data.attrs["crs"] = "EPSG:4326"
 
-    # Pass grid_mapping that doesn't exist as a coordinate
+    # CF convention should NOT find this
     crs = cf.read_crs(data, "spatial_ref")
+    assert crs is None
+
+    # Auto-detect should find it
+    crs = read_crs_auto(data, "spatial_ref")
     assert crs is not None
     assert crs == CRS.from_epsg(4326)
 
@@ -75,13 +88,22 @@ def test_read_transform__from_geotransform():
     assert transform == Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
 
 
-def test_read_transform__from_attrs():
-    """Test reading transform from object's attrs."""
+def test_read_transform__from_legacy_attrs():
+    """Test reading transform from object's attrs (legacy, not CF convention).
+
+    The 'transform' attribute is not part of CF convention but is supported
+    for backwards compatibility via the auto-detect method.
+    """
     data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
     # Transform stored as list in attrs
     data.attrs["transform"] = [1.0, 0.0, 0.0, 0.0, -1.0, 10.0]
 
+    # CF convention should NOT find this
     transform = cf.read_transform(data)
+    assert transform is None
+
+    # Auto-detect should find it
+    transform = read_transform_auto(data)
     assert transform is not None
     assert transform == Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
 

From ef5ca435f92e9ba4f376348c904b85d05b5f4cdb Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 07:55:48 +0100
Subject: [PATCH 14/29] Refactor convention handling to improve grid mapping
 writing and enhance CF compliance

---
 rioxarray/_convention/__init__.py             | 40 ++++++------
 rioxarray/_convention/cf.py                   | 57 +++++++++++++++++
 rioxarray/_spatial_utils.py                   |  1 -
 rioxarray/rioxarray.py                        | 61 +------------------
 .../integration/test_integration_rioxarray.py | 10 ++-
 5 files changed, 86 insertions(+), 83 deletions(-)

diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index be03644a..bcc97d0c 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -4,17 +4,19 @@
 and provides helpers for selecting conventions.
 """
 
-from typing import List, Optional, Protocol, Tuple, Union
+from typing import Dict, Optional, Protocol, Tuple, Union
 
 import rasterio.crs
 import xarray
 from affine import Affine
 
 from rioxarray._convention import cf
+from rioxarray._options import CONVENTION, get_option
 from rioxarray.crs import crs_from_user_input
+from rioxarray.enum import Convention
 
 
-class Convention(Protocol):
+class ConventionProtocol(Protocol):
     """Protocol defining the interface for convention modules."""
 
     @staticmethod
@@ -59,30 +61,28 @@ def write_transform(
         ...
 
 
-# List of convention modules in order of priority for reading
-# CF convention is tried first as it's the most common
-_CONVENTION_MODULES: List[Convention] = [cf]
+# Convention modules mapped by Convention enum
+_CONVENTION_MODULES: Dict[Convention, ConventionProtocol] = {Convention.CF: cf}
 
 
-def _get_convention(convention) -> Convention:
+def _get_convention(convention: Convention | None) -> ConventionProtocol:
     """
     Get the convention module for writing.
 
     Parameters
     ----------
-    convention : Convention enum value
-        The convention to use
+    convention : Convention enum value or None
+        The convention to use. If None, uses the global default.
 
     Returns
     -------
-    Convention module
+    ConventionProtocol
         The module implementing the convention
     """
-    from rioxarray.enum import Convention as ConventionEnum
-
-    if convention is ConventionEnum.CF:
-        return cf
-    raise ValueError(f"Unsupported convention: {convention}")
+    if convention is None:
+        convention = get_option(CONVENTION) or Convention.CF
+    convention = Convention(convention)
+    return _CONVENTION_MODULES[convention]
 
 
 def read_crs_auto(
@@ -104,8 +104,8 @@ def read_crs_auto(
     rasterio.crs.CRS or None
         CRS object, or None if not found in any convention
     """
-    for reader in _CONVENTION_MODULES:
-        result = reader.read_crs(obj, grid_mapping=grid_mapping)
+    for convention in _CONVENTION_MODULES.values():
+        result = convention.read_crs(obj, grid_mapping=grid_mapping)
         if result is not None:
             return result
 
@@ -137,8 +137,8 @@ def read_transform_auto(
     affine.Affine or None
         Transform object, or None if not found in any convention
     """
-    for reader in _CONVENTION_MODULES:
-        result = reader.read_transform(obj, grid_mapping=grid_mapping)
+    for convention in _CONVENTION_MODULES.values():
+        result = convention.read_transform(obj, grid_mapping=grid_mapping)
         if result is not None:
             return result
 
@@ -167,8 +167,8 @@ def read_spatial_dimensions_auto(
     tuple of (y_dim, x_dim) or None
         Tuple of dimension names, or None if not found in any convention
     """
-    for reader in _CONVENTION_MODULES:
-        result = reader.read_spatial_dimensions(obj)
+    for convention in _CONVENTION_MODULES.values():
+        result = convention.read_spatial_dimensions(obj)
         if result is not None:
             return result
     return None
diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index 15ef550f..9b265f6d 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -13,7 +13,9 @@
 from affine import Affine
 
 from rioxarray._options import EXPORT_GRID_MAPPING, get_option
+from rioxarray._spatial_utils import _get_spatial_dims, _has_spatial_dims
 from rioxarray.crs import crs_from_user_input
+from rioxarray.exceptions import MissingSpatialDimensionError
 
 
 def _find_grid_mapping(
@@ -192,6 +194,8 @@ def write_crs(
     """
     Write CRS using CF conventions.
 
+    This also writes the grid_mapping attribute to encoding for CF compliance.
+
     Parameters
     ----------
     obj : xarray.Dataset or xarray.DataArray
@@ -238,9 +242,57 @@ def write_crs(
         )
     obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
 
+    # Write grid_mapping to encoding (CF specific)
+    obj_out = _write_grid_mapping(obj_out, grid_mapping_name)
+
     return obj_out
 
 
+def _write_grid_mapping(
+    obj: Union[xarray.Dataset, xarray.DataArray],
+    grid_mapping_name: str,
+) -> Union[xarray.Dataset, xarray.DataArray]:
+    """
+    Write the CF grid_mapping attribute to the encoding.
+
+    Parameters
+    ----------
+    obj : xarray.Dataset or xarray.DataArray
+        Object to write grid_mapping to
+    grid_mapping_name : str
+        Name of the grid_mapping coordinate
+
+    Returns
+    -------
+    xarray.Dataset or xarray.DataArray
+        Object with grid_mapping written to encoding
+    """
+    if hasattr(obj, "data_vars"):
+        for var in obj.data_vars:
+            if not _has_spatial_dims(obj, var=var):
+                continue
+            try:
+                x_dim, y_dim = _get_spatial_dims(obj, var=var)
+            except MissingSpatialDimensionError:
+                continue
+            # remove grid_mapping from attributes if it exists
+            # and update the grid_mapping in encoding
+            new_attrs = dict(obj[var].attrs)
+            new_attrs.pop("grid_mapping", None)
+            obj[var].attrs = new_attrs
+            obj[var].encoding["grid_mapping"] = grid_mapping_name
+            obj[var].rio.set_spatial_dims(x_dim=x_dim, y_dim=y_dim, inplace=True)
+
+    # remove grid_mapping from attributes if it exists
+    # and update the grid_mapping in encoding
+    new_attrs = dict(obj.attrs)
+    new_attrs.pop("grid_mapping", None)
+    obj.attrs = new_attrs
+    obj.encoding["grid_mapping"] = grid_mapping_name
+
+    return obj
+
+
 def write_transform(
     obj: Union[xarray.Dataset, xarray.DataArray],
     transform: Affine,
@@ -250,6 +302,8 @@ def write_transform(
     """
     Write transform using CF conventions (GeoTransform attribute).
 
+    This also writes the grid_mapping attribute to encoding for CF compliance.
+
     Parameters
     ----------
     obj : xarray.Dataset or xarray.DataArray
@@ -279,4 +333,7 @@ def write_transform(
     )
     obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
 
+    # Write grid_mapping to encoding (CF specific)
+    obj_out = _write_grid_mapping(obj_out, grid_mapping_name)
+
     return obj_out
diff --git a/rioxarray/_spatial_utils.py b/rioxarray/_spatial_utils.py
index 05c92d26..69f40843 100644
--- a/rioxarray/_spatial_utils.py
+++ b/rioxarray/_spatial_utils.py
@@ -365,7 +365,6 @@ def _add_attrs_proj(
     new_data_array.rio.set_attrs(new_attrs, inplace=True)
 
     # make sure projection added
-    new_data_array.rio.write_grid_mapping(src_data_array.rio.grid_mapping, inplace=True)
     new_data_array.rio.write_crs(src_data_array.rio.crs, inplace=True)
     new_data_array.rio.write_coordinate_system(inplace=True)
     new_data_array.rio.write_transform(inplace=True)
diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index 1a5ec723..cf1f8658 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -27,7 +27,6 @@
     read_spatial_dimensions_auto,
     read_transform_auto,
 )
-from rioxarray._options import CONVENTION, get_option
 from rioxarray._spatial_utils import (  # noqa: F401, pylint: disable=unused-import
     DEFAULT_GRID_MAP,
     _affine_has_rotation,
@@ -205,48 +204,6 @@ def grid_mapping(self) -> str:
                 raise RioXarrayError("Multiple grid mappings exist.")
         return grid_mapping
 
-    def write_grid_mapping(
-        self, grid_mapping_name: str = DEFAULT_GRID_MAP, inplace: bool = False
-    ) -> Union[xarray.Dataset, xarray.DataArray]:
-        """
-        Write the CF grid_mapping attribute to the encoding.
-
-        Parameters
-        ----------
-        grid_mapping_name: str, optional
-            Name of the grid_mapping coordinate.
-        inplace: bool, optional
-            If True, it will write to the existing dataset. Default is False.
-
-        Returns
-        -------
-        :obj:`xarray.Dataset` | :obj:`xarray.DataArray`:
-            Modified dataset with CF compliant CRS information.
-        """
-        data_obj = self._get_obj(inplace=inplace)
-        if hasattr(data_obj, "data_vars"):
-            for var in data_obj.data_vars:
-                try:
-                    x_dim, y_dim = _get_spatial_dims(data_obj, var=var)
-                except MissingSpatialDimensionError:
-                    continue
-                # remove grid_mapping from attributes if it exists
-                # and update the grid_mapping in encoding
-                new_attrs = dict(data_obj[var].attrs)
-                new_attrs.pop("grid_mapping", None)
-                data_obj[var].rio.update_encoding(
-                    {"grid_mapping": grid_mapping_name}, inplace=True
-                ).rio.set_attrs(new_attrs, inplace=True).rio.set_spatial_dims(
-                    x_dim=x_dim, y_dim=y_dim, inplace=True
-                )
-        # remove grid_mapping from attributes if it exists
-        # and update the grid_mapping in encoding
-        new_attrs = dict(data_obj.attrs)
-        new_attrs.pop("grid_mapping", None)
-        return data_obj.rio.update_encoding(
-            {"grid_mapping": grid_mapping_name}, inplace=True
-        ).rio.set_attrs(new_attrs, inplace=True)
-
     def write_crs(
         self,
         input_crs: Optional[Any] = None,
@@ -297,10 +254,6 @@ def write_crs(
                 "CRS not found. Please set the CRS with 'rio.write_crs()'."
             )
 
-        # Determine which convention to use
-        if convention is None:
-            convention = get_option(CONVENTION) or Convention.CF
-
         grid_mapping_name = (
             self.grid_mapping if grid_mapping_name is None else grid_mapping_name
         )
@@ -310,15 +263,12 @@ def write_crs(
 
         # Use the convention module to write CRS
         convention_module = _get_convention(convention)
-        data_obj = convention_module.write_crs(
+        return convention_module.write_crs(
             data_obj,
             data_obj.rio.crs,
             grid_mapping_name,
             inplace=True,
         )
-        return data_obj.rio.write_grid_mapping(
-            grid_mapping_name=grid_mapping_name, inplace=True
-        )
 
     def estimate_utm_crs(self, datum_name: str = "WGS 84") -> rasterio.crs.CRS:
         """Returns the estimated UTM CRS based on the bounds of the dataset.
@@ -404,10 +354,6 @@ def write_transform(
         transform = transform or self.transform(recalc=True)
         data_obj = self._get_obj(inplace=inplace)
 
-        # Determine which convention to use
-        if convention is None:
-            convention = get_option(CONVENTION) or Convention.CF
-
         grid_mapping_name = (
             self.grid_mapping if grid_mapping_name is None else grid_mapping_name
         )
@@ -417,15 +363,12 @@ def write_transform(
 
         # Use the convention module to write transform
         convention_module = _get_convention(convention)
-        data_obj = convention_module.write_transform(
+        return convention_module.write_transform(
             data_obj,
             transform,
             grid_mapping_name,
             inplace=True,
         )
-        return data_obj.rio.write_grid_mapping(
-            grid_mapping_name=grid_mapping_name, inplace=True
-        )
 
     def transform(self, recalc: bool = False) -> Affine:
         """
diff --git a/test/integration/test_integration_rioxarray.py b/test/integration/test_integration_rioxarray.py
index 7f8ed05b..7aa9cbe2 100644
--- a/test/integration/test_integration_rioxarray.py
+++ b/test/integration/test_integration_rioxarray.py
@@ -3073,18 +3073,20 @@ def test_grid_mapping__pre_existing(open_func):
     [partial(xarray.open_dataset, mask_and_scale=False), rioxarray.open_rasterio],
 )
 def test_grid_mapping__change(open_func):
+    from rioxarray._convention import cf
+
     with open_func(os.path.join(TEST_INPUT_DATA_DIR, "tmmx_20190121.nc")) as xdi:
         xdi = _ensure_dataset(xdi)
         # part 1: check changing the data var grid mapping
         xdi["dummy"] = xdi.air_temperature.copy()
-        xdi.dummy.rio.write_grid_mapping("different_crs", inplace=True)
+        cf._write_grid_mapping(xdi.dummy, "different_crs")
         assert xdi.air_temperature.rio.grid_mapping == "crs"
         assert xdi.dummy.rio.grid_mapping == "different_crs"
         # part 2: ensure error raised when multiple exist
         with pytest.raises(RioXarrayError, match="Multiple grid mappings exist."):
             xdi.rio.grid_mapping
         # part 3: ensure that writing the grid mapping on the dataset fixes it
-        xdi.rio.write_grid_mapping("final_crs", inplace=True)
+        cf._write_grid_mapping(xdi, "final_crs")
         assert xdi.air_temperature.rio.grid_mapping == "final_crs"
         assert xdi.dummy.rio.grid_mapping == "final_crs"
         assert xdi.rio.grid_mapping == "final_crs"
@@ -3092,8 +3094,10 @@ def test_grid_mapping__change(open_func):
 
 @pytest.mark.parametrize("dataset", [xarray.Dataset, xarray.DataArray])
 def test_grid_mapping__attrs_to_encoding(dataset):
+    from rioxarray._convention import cf
+
     xds = dataset(attrs={"grid_mapping": "wrong_spot"})
-    xds.rio.write_grid_mapping("correct_spot", inplace=True)
+    cf._write_grid_mapping(xds, "correct_spot")
     assert xds.encoding["grid_mapping"] == "correct_spot"
     assert "grid_mapping" not in xds.attrs
 

From 6d5b2dbc0596dea2459bd30e5c82acad5df34f1e Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 08:10:03 +0100
Subject: [PATCH 15/29] grid_mapping in CF

---
 rioxarray/_convention/__init__.py | 20 ++++++++++----------
 rioxarray/_convention/cf.py       | 22 ++++++++++++++++------
 rioxarray/rioxarray.py            |  4 ++--
 test/unit/test_convention_cf.py   |  8 ++++----
 4 files changed, 32 insertions(+), 22 deletions(-)

diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index bcc97d0c..dbe83dfa 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -44,8 +44,8 @@ def read_spatial_dimensions(
     def write_crs(
         obj: Union[xarray.Dataset, xarray.DataArray],
         crs: rasterio.crs.CRS,
-        grid_mapping_name: str,
         inplace: bool = True,
+        **kwargs,
     ) -> Union[xarray.Dataset, xarray.DataArray]:
         """Write CRS to the object using this convention."""
         ...
@@ -54,8 +54,8 @@ def write_crs(
     def write_transform(
         obj: Union[xarray.Dataset, xarray.DataArray],
         transform: Affine,
-        grid_mapping_name: str,
         inplace: bool = True,
+        **kwargs,
     ) -> Union[xarray.Dataset, xarray.DataArray]:
         """Write transform to the object using this convention."""
         ...
@@ -87,7 +87,7 @@ def _get_convention(convention: Convention | None) -> ConventionProtocol:
 
 def read_crs_auto(
     obj: Union[xarray.Dataset, xarray.DataArray],
-    grid_mapping: Optional[str] = None,
+    **kwargs,
 ) -> Optional[rasterio.crs.CRS]:
     """
     Auto-detect and read CRS by trying all convention readers.
@@ -96,8 +96,8 @@ def read_crs_auto(
     ----------
     obj : xarray.Dataset or xarray.DataArray
         Object to read CRS from
-    grid_mapping : str, optional
-        Name of the grid_mapping coordinate (passed to CF reader)
+    **kwargs
+        Convention-specific parameters (e.g., grid_mapping for CF)
 
     Returns
     -------
@@ -105,7 +105,7 @@ def read_crs_auto(
         CRS object, or None if not found in any convention
     """
     for convention in _CONVENTION_MODULES.values():
-        result = convention.read_crs(obj, grid_mapping=grid_mapping)
+        result = convention.read_crs(obj, **kwargs)
         if result is not None:
             return result
 
@@ -120,7 +120,7 @@ def read_crs_auto(
 
 def read_transform_auto(
     obj: Union[xarray.Dataset, xarray.DataArray],
-    grid_mapping: Optional[str] = None,
+    **kwargs,
 ) -> Optional[Affine]:
     """
     Auto-detect and read transform by trying all convention readers.
@@ -129,8 +129,8 @@ def read_transform_auto(
     ----------
     obj : xarray.Dataset or xarray.DataArray
         Object to read transform from
-    grid_mapping : str, optional
-        Name of the grid_mapping coordinate (passed to CF reader)
+    **kwargs
+        Convention-specific parameters (e.g., grid_mapping for CF)
 
     Returns
     -------
@@ -138,7 +138,7 @@ def read_transform_auto(
         Transform object, or None if not found in any convention
     """
     for convention in _CONVENTION_MODULES.values():
-        result = convention.read_transform(obj, grid_mapping=grid_mapping)
+        result = convention.read_transform(obj, **kwargs)
         if result is not None:
             return result
 
diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index 9b265f6d..68ebfcaa 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -188,8 +188,8 @@ def read_spatial_dimensions(
 def write_crs(
     obj: Union[xarray.Dataset, xarray.DataArray],
     crs: rasterio.crs.CRS,
-    grid_mapping_name: str,
     inplace: bool = True,
+    **kwargs,
 ) -> Union[xarray.Dataset, xarray.DataArray]:
     """
     Write CRS using CF conventions.
@@ -202,16 +202,21 @@ def write_crs(
         Object to write CRS to
     crs : rasterio.crs.CRS
         CRS to write
-    grid_mapping_name : str
-        Name of the grid_mapping coordinate
     inplace : bool, default True
         If True, modify object in place
+    **kwargs
+        grid_mapping_name : str
+            Name of the grid_mapping coordinate (required for CF)
 
     Returns
     -------
     xarray.Dataset or xarray.DataArray
         Object with CRS written
     """
+    grid_mapping_name = kwargs.get("grid_mapping_name")
+    if grid_mapping_name is None:
+        raise ValueError("grid_mapping_name is required for CF convention")
+
     obj_out = obj if inplace else obj.copy(deep=True)
 
     # Get original transform before modifying
@@ -296,8 +301,8 @@ def _write_grid_mapping(
 def write_transform(
     obj: Union[xarray.Dataset, xarray.DataArray],
     transform: Affine,
-    grid_mapping_name: str,
     inplace: bool = True,
+    **kwargs,
 ) -> Union[xarray.Dataset, xarray.DataArray]:
     """
     Write transform using CF conventions (GeoTransform attribute).
@@ -310,16 +315,21 @@ def write_transform(
         Object to write transform to
     transform : affine.Affine
         Transform to write
-    grid_mapping_name : str
-        Name of the grid_mapping coordinate
     inplace : bool, default True
         If True, modify object in place
+    **kwargs
+        grid_mapping_name : str
+            Name of the grid_mapping coordinate (required for CF)
 
     Returns
     -------
     xarray.Dataset or xarray.DataArray
         Object with transform written
     """
+    grid_mapping_name = kwargs.get("grid_mapping_name")
+    if grid_mapping_name is None:
+        raise ValueError("grid_mapping_name is required for CF convention")
+
     obj_out = obj if inplace else obj.copy(deep=True)
 
     try:
diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index cf1f8658..88b183c3 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -266,8 +266,8 @@ def write_crs(
         return convention_module.write_crs(
             data_obj,
             data_obj.rio.crs,
-            grid_mapping_name,
             inplace=True,
+            grid_mapping_name=grid_mapping_name,
         )
 
     def estimate_utm_crs(self, datum_name: str = "WGS 84") -> rasterio.crs.CRS:
@@ -366,8 +366,8 @@ def write_transform(
         return convention_module.write_transform(
             data_obj,
             transform,
-            grid_mapping_name,
             inplace=True,
+            grid_mapping_name=grid_mapping_name,
         )
 
     def transform(self, recalc: bool = False) -> Affine:
diff --git a/test/unit/test_convention_cf.py b/test/unit/test_convention_cf.py
index 495e8d88..fe9c1dfb 100644
--- a/test/unit/test_convention_cf.py
+++ b/test/unit/test_convention_cf.py
@@ -59,11 +59,11 @@ def test_read_crs__from_legacy_attrs_with_missing_grid_mapping():
     data.attrs["crs"] = "EPSG:4326"
 
     # CF convention should NOT find this
-    crs = cf.read_crs(data, "spatial_ref")
+    crs = cf.read_crs(data, grid_mapping="spatial_ref")
     assert crs is None
 
     # Auto-detect should find it
-    crs = read_crs_auto(data, "spatial_ref")
+    crs = read_crs_auto(data, grid_mapping="spatial_ref")
     assert crs is not None
     assert crs == CRS.from_epsg(4326)
 
@@ -179,7 +179,7 @@ def test_write_crs():
     data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
     crs = CRS.from_epsg(4326)
 
-    result = cf.write_crs(data, crs, "spatial_ref", inplace=False)
+    result = cf.write_crs(data, crs, inplace=False, grid_mapping_name="spatial_ref")
 
     assert "spatial_ref" in result.coords
     assert result.coords["spatial_ref"].attrs["spatial_ref"] == crs.to_wkt()
@@ -191,7 +191,7 @@ def test_write_transform():
     data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
     transform = Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
 
-    result = cf.write_transform(data, transform, "spatial_ref", inplace=False)
+    result = cf.write_transform(data, transform, inplace=False, grid_mapping_name="spatial_ref")
 
     assert "spatial_ref" in result.coords
     assert "GeoTransform" in result.coords["spatial_ref"].attrs

From 4ebffdf0a832027d78ac30aca854237e96548e1a Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 17:27:46 +0100
Subject: [PATCH 16/29] Refactor grid mapping handling to improve clarity and
 consistency in function signatures and usage

---
 rioxarray/_convention/cf.py                   | 16 +++--
 rioxarray/_spatial_utils.py                   |  6 +-
 rioxarray/rioxarray.py                        | 28 +++++++++
 .../integration/test_integration_rioxarray.py | 10 +--
 test/unit/test_convention_cf.py               | 62 ++++++++++---------
 5 files changed, 78 insertions(+), 44 deletions(-)

diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index 68ebfcaa..245073d3 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -20,6 +20,7 @@
 
 def _find_grid_mapping(
     obj: Union[xarray.Dataset, xarray.DataArray],
+    *,
     grid_mapping: Optional[str] = None,
 ) -> Optional[str]:
     """
@@ -58,7 +59,7 @@ def _find_grid_mapping(
 
 
 def read_crs(
-    obj: Union[xarray.Dataset, xarray.DataArray], grid_mapping: Optional[str] = None
+    obj: Union[xarray.Dataset, xarray.DataArray], *, grid_mapping: Optional[str] = None
 ) -> Optional[rasterio.crs.CRS]:
     """
     Read CRS from CF conventions.
@@ -75,7 +76,7 @@ def read_crs(
     rasterio.crs.CRS or None
         CRS object, or None if not found
     """
-    grid_mapping = _find_grid_mapping(obj, grid_mapping)
+    grid_mapping = _find_grid_mapping(obj, grid_mapping=grid_mapping)
 
     if grid_mapping is not None:
         try:
@@ -101,7 +102,7 @@ def read_crs(
 
 
 def read_transform(
-    obj: Union[xarray.Dataset, xarray.DataArray], grid_mapping: Optional[str] = None
+    obj: Union[xarray.Dataset, xarray.DataArray], *, grid_mapping: Optional[str] = None
 ) -> Optional[Affine]:
     """
     Read transform from CF conventions (GeoTransform attribute).
@@ -118,7 +119,7 @@ def read_transform(
     affine.Affine or None
         Transform object, or None if not found
     """
-    grid_mapping = _find_grid_mapping(obj, grid_mapping)
+    grid_mapping = _find_grid_mapping(obj, grid_mapping=grid_mapping)
 
     if grid_mapping is not None:
         try:
@@ -188,6 +189,7 @@ def read_spatial_dimensions(
 def write_crs(
     obj: Union[xarray.Dataset, xarray.DataArray],
     crs: rasterio.crs.CRS,
+    *,
     inplace: bool = True,
     **kwargs,
 ) -> Union[xarray.Dataset, xarray.DataArray]:
@@ -248,13 +250,14 @@ def write_crs(
     obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
 
     # Write grid_mapping to encoding (CF specific)
-    obj_out = _write_grid_mapping(obj_out, grid_mapping_name)
+    obj_out = _write_grid_mapping(obj_out, grid_mapping_name=grid_mapping_name)
 
     return obj_out
 
 
 def _write_grid_mapping(
     obj: Union[xarray.Dataset, xarray.DataArray],
+    *,
     grid_mapping_name: str,
 ) -> Union[xarray.Dataset, xarray.DataArray]:
     """
@@ -301,6 +304,7 @@ def _write_grid_mapping(
 def write_transform(
     obj: Union[xarray.Dataset, xarray.DataArray],
     transform: Affine,
+    *,
     inplace: bool = True,
     **kwargs,
 ) -> Union[xarray.Dataset, xarray.DataArray]:
@@ -344,6 +348,6 @@ def write_transform(
     obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
 
     # Write grid_mapping to encoding (CF specific)
-    obj_out = _write_grid_mapping(obj_out, grid_mapping_name)
+    obj_out = _write_grid_mapping(obj_out, grid_mapping_name=grid_mapping_name)
 
     return obj_out
diff --git a/rioxarray/_spatial_utils.py b/rioxarray/_spatial_utils.py
index 69f40843..c651f012 100644
--- a/rioxarray/_spatial_utils.py
+++ b/rioxarray/_spatial_utils.py
@@ -365,7 +365,11 @@ def _add_attrs_proj(
     new_data_array.rio.set_attrs(new_attrs, inplace=True)
 
     # make sure projection added
-    new_data_array.rio.write_crs(src_data_array.rio.crs, inplace=True)
+    new_data_array.rio.write_crs(
+        src_data_array.rio.crs,
+        grid_mapping_name=src_data_array.rio.grid_mapping,
+        inplace=True,
+    )
     new_data_array.rio.write_coordinate_system(inplace=True)
     new_data_array.rio.write_transform(inplace=True)
     # make sure encoding added
diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index 88b183c3..9d5c63ae 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -23,6 +23,7 @@
 
 from rioxarray._convention import (
     _get_convention,
+    cf,
     read_crs_auto,
     read_spatial_dimensions_auto,
     read_transform_auto,
@@ -204,6 +205,33 @@ def grid_mapping(self) -> str:
                 raise RioXarrayError("Multiple grid mappings exist.")
         return grid_mapping
 
+    def write_grid_mapping(
+        self,
+        grid_mapping_name: str = DEFAULT_GRID_MAP,
+        inplace: bool = False,
+    ) -> Union[xarray.Dataset, xarray.DataArray]:
+        """
+        Write the grid_mapping attribute to the encoding.
+
+        Parameters
+        ----------
+        grid_mapping_name: str
+            Name of the grid_mapping coordinate.
+        inplace: bool, optional
+            If True, it will write to the existing dataset. Default is False.
+
+        Returns
+        -------
+        :obj:`xarray.Dataset` | :obj:`xarray.DataArray`:
+            Modified dataset with grid_mapping written.
+
+        See Also
+        --------
+        :meth:`rioxarray.rioxarray.XRasterBase.write_crs`
+        """
+        data_obj = self._get_obj(inplace=inplace)
+        return cf._write_grid_mapping(data_obj, grid_mapping_name=grid_mapping_name)
+
     def write_crs(
         self,
         input_crs: Optional[Any] = None,
diff --git a/test/integration/test_integration_rioxarray.py b/test/integration/test_integration_rioxarray.py
index 7aa9cbe2..7f8ed05b 100644
--- a/test/integration/test_integration_rioxarray.py
+++ b/test/integration/test_integration_rioxarray.py
@@ -3073,20 +3073,18 @@ def test_grid_mapping__pre_existing(open_func):
     [partial(xarray.open_dataset, mask_and_scale=False), rioxarray.open_rasterio],
 )
 def test_grid_mapping__change(open_func):
-    from rioxarray._convention import cf
-
     with open_func(os.path.join(TEST_INPUT_DATA_DIR, "tmmx_20190121.nc")) as xdi:
         xdi = _ensure_dataset(xdi)
         # part 1: check changing the data var grid mapping
         xdi["dummy"] = xdi.air_temperature.copy()
-        cf._write_grid_mapping(xdi.dummy, "different_crs")
+        xdi.dummy.rio.write_grid_mapping("different_crs", inplace=True)
         assert xdi.air_temperature.rio.grid_mapping == "crs"
         assert xdi.dummy.rio.grid_mapping == "different_crs"
         # part 2: ensure error raised when multiple exist
         with pytest.raises(RioXarrayError, match="Multiple grid mappings exist."):
             xdi.rio.grid_mapping
         # part 3: ensure that writing the grid mapping on the dataset fixes it
-        cf._write_grid_mapping(xdi, "final_crs")
+        xdi.rio.write_grid_mapping("final_crs", inplace=True)
         assert xdi.air_temperature.rio.grid_mapping == "final_crs"
         assert xdi.dummy.rio.grid_mapping == "final_crs"
         assert xdi.rio.grid_mapping == "final_crs"
@@ -3094,10 +3092,8 @@ def test_grid_mapping__change(open_func):
 
 @pytest.mark.parametrize("dataset", [xarray.Dataset, xarray.DataArray])
 def test_grid_mapping__attrs_to_encoding(dataset):
-    from rioxarray._convention import cf
-
     xds = dataset(attrs={"grid_mapping": "wrong_spot"})
-    cf._write_grid_mapping(xds, "correct_spot")
+    xds.rio.write_grid_mapping("correct_spot", inplace=True)
     assert xds.encoding["grid_mapping"] == "correct_spot"
     assert "grid_mapping" not in xds.attrs
 
diff --git a/test/unit/test_convention_cf.py b/test/unit/test_convention_cf.py
index fe9c1dfb..365c3589 100644
--- a/test/unit/test_convention_cf.py
+++ b/test/unit/test_convention_cf.py
@@ -1,6 +1,6 @@
 """Unit tests for the CF convention module."""
-import numpy as np
-import xarray as xr
+import numpy
+import xarray
 from affine import Affine
 from rasterio.crs import CRS
 
@@ -9,22 +9,22 @@
 
 def test_read_crs__from_grid_mapping_spatial_ref():
     """Test reading CRS from grid_mapping coordinate's spatial_ref attribute."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
-    data.coords["spatial_ref"] = xr.Variable((), 0)
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
+    data.coords["spatial_ref"] = xarray.Variable((), 0)
     data.coords["spatial_ref"].attrs["spatial_ref"] = "EPSG:4326"
 
-    crs = cf.read_crs(data, "spatial_ref")
+    crs = cf.read_crs(data, grid_mapping="spatial_ref")
     assert crs is not None
     assert crs == CRS.from_epsg(4326)
 
 
 def test_read_crs__from_grid_mapping_crs_wkt():
     """Test reading CRS from grid_mapping coordinate's crs_wkt attribute."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
-    data.coords["spatial_ref"] = xr.Variable((), 0)
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
+    data.coords["spatial_ref"] = xarray.Variable((), 0)
     data.coords["spatial_ref"].attrs["crs_wkt"] = CRS.from_epsg(4326).to_wkt()
 
-    crs = cf.read_crs(data, "spatial_ref")
+    crs = cf.read_crs(data, grid_mapping="spatial_ref")
     assert crs is not None
     assert crs == CRS.from_epsg(4326)
 
@@ -35,7 +35,7 @@ def test_read_crs__from_legacy_attrs():
     The 'crs' attribute is not part of CF convention but is supported
     for backwards compatibility via the auto-detect method.
     """
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
     data.attrs["crs"] = "EPSG:4326"
 
     # CF convention should NOT find this
@@ -55,7 +55,7 @@ def test_read_crs__from_legacy_attrs_with_missing_grid_mapping():
     "spatial_ref" as a default, but the coordinate doesn't actually exist.
     The CRS should still be found via auto-detect.
     """
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
     data.attrs["crs"] = "EPSG:4326"
 
     # CF convention should NOT find this
@@ -70,7 +70,7 @@ def test_read_crs__from_legacy_attrs_with_missing_grid_mapping():
 
 def test_read_crs__not_found():
     """Test that None is returned when no CRS is found."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
 
     crs = cf.read_crs(data)
     assert crs is None
@@ -78,12 +78,12 @@ def test_read_crs__not_found():
 
 def test_read_transform__from_geotransform():
     """Test reading transform from GeoTransform attribute."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
-    data.coords["spatial_ref"] = xr.Variable((), 0)
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
+    data.coords["spatial_ref"] = xarray.Variable((), 0)
     # GeoTransform format: [c, a, b, f, d, e] (GDAL format)
     data.coords["spatial_ref"].attrs["GeoTransform"] = "0.0 1.0 0.0 10.0 0.0 -1.0"
 
-    transform = cf.read_transform(data, "spatial_ref")
+    transform = cf.read_transform(data, grid_mapping="spatial_ref")
     assert transform is not None
     assert transform == Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
 
@@ -94,7 +94,7 @@ def test_read_transform__from_legacy_attrs():
     The 'transform' attribute is not part of CF convention but is supported
     for backwards compatibility via the auto-detect method.
     """
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
     # Transform stored as list in attrs
     data.attrs["transform"] = [1.0, 0.0, 0.0, 0.0, -1.0, 10.0]
 
@@ -110,7 +110,7 @@ def test_read_transform__from_legacy_attrs():
 
 def test_read_transform__not_found():
     """Test that None is returned when no transform is found."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
 
     transform = cf.read_transform(data)
     assert transform is None
@@ -118,7 +118,7 @@ def test_read_transform__not_found():
 
 def test_read_spatial_dimensions__xy():
     """Test detecting x/y dimension names."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
 
     dims = cf.read_spatial_dimensions(data)
     assert dims == ("y", "x")
@@ -126,7 +126,7 @@ def test_read_spatial_dimensions__xy():
 
 def test_read_spatial_dimensions__lonlat():
     """Test detecting longitude/latitude dimension names."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["latitude", "longitude"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["latitude", "longitude"])
 
     dims = cf.read_spatial_dimensions(data)
     assert dims == ("latitude", "longitude")
@@ -134,12 +134,12 @@ def test_read_spatial_dimensions__lonlat():
 
 def test_read_spatial_dimensions__cf_axis():
     """Test detecting dimensions from CF axis attributes."""
-    data = xr.DataArray(
-        np.random.rand(10, 10),
+    data = xarray.DataArray(
+        numpy.random.rand(10, 10),
         dims=["row", "col"],
         coords={
-            "row": ("row", np.arange(10)),
-            "col": ("col", np.arange(10)),
+            "row": ("row", numpy.arange(10)),
+            "col": ("col", numpy.arange(10)),
         },
     )
     data.coords["row"].attrs["axis"] = "Y"
@@ -151,12 +151,12 @@ def test_read_spatial_dimensions__cf_axis():
 
 def test_read_spatial_dimensions__cf_standard_name():
     """Test detecting dimensions from CF standard_name attributes."""
-    data = xr.DataArray(
-        np.random.rand(10, 10),
+    data = xarray.DataArray(
+        numpy.random.rand(10, 10),
         dims=["lat", "lon"],
         coords={
-            "lat": ("lat", np.arange(10)),
-            "lon": ("lon", np.arange(10)),
+            "lat": ("lat", numpy.arange(10)),
+            "lon": ("lon", numpy.arange(10)),
         },
     )
     data.coords["lat"].attrs["standard_name"] = "latitude"
@@ -168,7 +168,7 @@ def test_read_spatial_dimensions__cf_standard_name():
 
 def test_read_spatial_dimensions__not_found():
     """Test that None is returned when spatial dimensions are not found."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["a", "b"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["a", "b"])
 
     dims = cf.read_spatial_dimensions(data)
     assert dims is None
@@ -176,7 +176,7 @@ def test_read_spatial_dimensions__not_found():
 
 def test_write_crs():
     """Test writing CRS to a DataArray."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
     crs = CRS.from_epsg(4326)
 
     result = cf.write_crs(data, crs, inplace=False, grid_mapping_name="spatial_ref")
@@ -188,10 +188,12 @@ def test_write_crs():
 
 def test_write_transform():
     """Test writing transform to a DataArray."""
-    data = xr.DataArray(np.random.rand(10, 10), dims=["y", "x"])
+    data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
     transform = Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
 
-    result = cf.write_transform(data, transform, inplace=False, grid_mapping_name="spatial_ref")
+    result = cf.write_transform(
+        data, transform, inplace=False, grid_mapping_name="spatial_ref"
+    )
 
     assert "spatial_ref" in result.coords
     assert "GeoTransform" in result.coords["spatial_ref"].attrs

From f4a0fee79e9add06ebb065bb99fee8efa5d2c525 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 17:33:31 +0100
Subject: [PATCH 17/29] Pass grid_mapping_name to read_transform in write_crs
 for accurate transform retrieval

---
 rioxarray/_convention/cf.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index 245073d3..fa144f2e 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -221,8 +221,8 @@ def write_crs(
 
     obj_out = obj if inplace else obj.copy(deep=True)
 
-    # Get original transform before modifying
-    transform = read_transform(obj)
+    # Get original transform before modifying (pass grid_mapping_name to find it)
+    transform = read_transform(obj, grid_mapping=grid_mapping_name)
 
     # Remove old grid mapping coordinate if exists
     try:

From 7d3fcae4b44b5404b05ece0c14e1ddc6e95c20ca Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 17:37:08 +0100
Subject: [PATCH 18/29] Refactor grid mapping handling in write_crs and
 write_transform to use defaults and improve clarity

---
 rioxarray/_convention/cf.py | 12 +++++++++---
 rioxarray/rioxarray.py      | 10 ++--------
 2 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index fa144f2e..42028a7a 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -13,7 +13,11 @@
 from affine import Affine
 
 from rioxarray._options import EXPORT_GRID_MAPPING, get_option
-from rioxarray._spatial_utils import _get_spatial_dims, _has_spatial_dims
+from rioxarray._spatial_utils import (
+    DEFAULT_GRID_MAP,
+    _get_spatial_dims,
+    _has_spatial_dims,
+)
 from rioxarray.crs import crs_from_user_input
 from rioxarray.exceptions import MissingSpatialDimensionError
 
@@ -217,7 +221,8 @@ def write_crs(
     """
     grid_mapping_name = kwargs.get("grid_mapping_name")
     if grid_mapping_name is None:
-        raise ValueError("grid_mapping_name is required for CF convention")
+        # Get grid_mapping from encoding/attrs or use default
+        grid_mapping_name = _find_grid_mapping(obj) or DEFAULT_GRID_MAP
 
     obj_out = obj if inplace else obj.copy(deep=True)
 
@@ -332,7 +337,8 @@ def write_transform(
     """
     grid_mapping_name = kwargs.get("grid_mapping_name")
     if grid_mapping_name is None:
-        raise ValueError("grid_mapping_name is required for CF convention")
+        # Get grid_mapping from encoding/attrs or use default
+        grid_mapping_name = _find_grid_mapping(obj) or DEFAULT_GRID_MAP
 
     obj_out = obj if inplace else obj.copy(deep=True)
 
diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index 9d5c63ae..5e82ddad 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -282,14 +282,11 @@ def write_crs(
                 "CRS not found. Please set the CRS with 'rio.write_crs()'."
             )
 
-        grid_mapping_name = (
-            self.grid_mapping if grid_mapping_name is None else grid_mapping_name
-        )
-
         # Remove legacy crs attr (not part of any convention)
         data_obj.attrs.pop("crs", None)
 
         # Use the convention module to write CRS
+        # Pass user input grid_mapping_name (may be None, convention handles default)
         convention_module = _get_convention(convention)
         return convention_module.write_crs(
             data_obj,
@@ -382,14 +379,11 @@ def write_transform(
         transform = transform or self.transform(recalc=True)
         data_obj = self._get_obj(inplace=inplace)
 
-        grid_mapping_name = (
-            self.grid_mapping if grid_mapping_name is None else grid_mapping_name
-        )
-
         # Remove legacy transform attr (not part of any convention)
         data_obj.attrs.pop("transform", None)
 
         # Use the convention module to write transform
+        # Pass user input grid_mapping_name (may be None, convention handles default)
         convention_module = _get_convention(convention)
         return convention_module.write_transform(
             data_obj,

From 03b5d7bb507b6068e9887554bb34b756edcfa3b0 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 17:54:20 +0100
Subject: [PATCH 19/29] Refactor convention handling to prioritize globally set
 conventions for reading and writing CRS and transform information

---
 docs/getting_started/crs_management.ipynb | 68 ++++++++++++++++++++++-
 docs/history.rst                          |  4 +-
 rioxarray/_convention/__init__.py         | 57 +++++++++++++++++--
 3 files changed, 118 insertions(+), 11 deletions(-)

diff --git a/docs/getting_started/crs_management.ipynb b/docs/getting_started/crs_management.ipynb
index 7e0ff7c7..cf4c4bb5 100644
--- a/docs/getting_started/crs_management.ipynb
+++ b/docs/getting_started/crs_management.ipynb
@@ -29,6 +29,56 @@
     "Operations on xarray objects can cause data loss. Due to this, rioxarray writes and expects the spatial reference information to exist in the coordinates."
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Conventions\n",
+    "\n",
+    "rioxarray supports multiple conventions for storing geospatial metadata. The convention system provides a flexible way to read and write CRS and transform information.\n",
+    "\n",
+    "### Supported Conventions\n",
+    "\n",
+    "- **CF (Climate and Forecasts)**: The default convention, using `grid_mapping` coordinates with attributes like `spatial_ref`, `crs_wkt`, and `GeoTransform`. This is the standard for netCDF files in the geospatial community.\n",
+    "\n",
+    "### How Conventions Work\n",
+    "\n",
+    "- **Reading**: If a convention is set globally, that convention is tried **first** for better performance. If not found, other conventions are tried as fallback. This allows you to optimize reads when you know the data format.\n",
+    "- **Writing**: Uses the global `convention` setting (default: CF) or a per-method `convention` parameter.\n",
+    "\n",
+    "### Setting the Convention\n",
+    "\n",
+    "You can set the convention globally using `set_options()`:\n",
+    "\n",
+    "```python\n",
+    "from rioxarray import set_options\n",
+    "from rioxarray.enum import Convention\n",
+    "\n",
+    "# Set globally - reads will try CF first, writes will use CF\n",
+    "set_options(convention=Convention.CF)\n",
+    "\n",
+    "# Or use as a context manager\n",
+    "with set_options(convention=Convention.CF):\n",
+    "    # CF convention is tried first when reading\n",
+    "    crs = data.rio.crs\n",
+    "    # CF convention is used for writing\n",
+    "    data.rio.write_crs(\"EPSG:4326\", inplace=True)\n",
+    "```\n",
+    "\n",
+    "Or specify the convention per-method (for writing only):\n",
+    "\n",
+    "```python\n",
+    "from rioxarray.enum import Convention\n",
+    "\n",
+    "data.rio.write_crs(\"EPSG:4326\", convention=Convention.CF, inplace=True)\n",
+    "```\n",
+    "\n",
+    "#### API Documentation\n",
+    "\n",
+    "- [rioxarray.set_options](../rioxarray.rst#rioxarray.set_options)\n",
+    "- [rioxarray.enum.Convention](../rioxarray.rst#rioxarray.enum.Convention)"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -524,12 +574,18 @@
     "## Setting the CRS\n",
     "\n",
     "Use the `rio.write_crs` method to set the CRS on your `xarray.Dataset` or `xarray.DataArray`.\n",
-    "This modifies the `xarray.Dataset` or `xarray.DataArray` and sets the CRS in a CF compliant manner.\n",
+    "This modifies the `xarray.Dataset` or `xarray.DataArray` and sets the CRS using the configured convention (default: CF).\n",
     "\n",
     "- [rio.write_crs()](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.write_crs)\n",
     "- [rio.crs](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.crs)\n",
     "\n",
-    "**Note:** It is recommended to use `rio.write_crs()` if you want the CRS to persist on the Dataset/DataArray and to write the CRS CF compliant metadata. Calling only `rio.set_crs()` CRS storage method is lossy and will not modify the Dataset/DataArray metadata."
+    "**Parameters:**\n",
+    "- `input_crs`: Anything accepted by `rasterio.crs.CRS.from_user_input()`\n",
+    "- `grid_mapping_name`: Name of the grid_mapping coordinate (CF convention only)\n",
+    "- `convention`: Override the global convention setting for this call\n",
+    "- `inplace`: If True, modify the object in place\n",
+    "\n",
+    "**Note:** It is recommended to use `rio.write_crs()` if you want the CRS to persist on the Dataset/DataArray and to write convention-compliant metadata. Calling only `rio.set_crs()` is lossy and will not modify the Dataset/DataArray metadata."
    ]
   },
   {
@@ -1037,7 +1093,13 @@
     "Use the `rio.write_transform` method to set the transform on your `xarray.Dataset` or `xarray.DataArray`.\n",
     "\n",
     "- [rio.write_transform()](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.write_transform)\n",
-    "- [rio.transform()](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.transform)"
+    "- [rio.transform()](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.transform)\n",
+    "\n",
+    "**Parameters:**\n",
+    "- `transform`: The affine transform of the dataset. If not provided, it will be calculated from coordinates.\n",
+    "- `grid_mapping_name`: Name of the grid_mapping coordinate (CF convention only)\n",
+    "- `convention`: Override the global convention setting for this call\n",
+    "- `inplace`: If True, modify the object in place"
    ]
   },
   {
diff --git a/docs/history.rst b/docs/history.rst
index f2cb6e87..53313e49 100644
--- a/docs/history.rst
+++ b/docs/history.rst
@@ -3,8 +3,8 @@ History
 
 Latest
 ------
-- ENH: Add `convention` option to `set_options()` for future multi-convention support (pull #XXX)
-- REF: Extract CF convention logic to `_convention/cf.py` module (pull #XXX)
+- ENH: Add `convention` option to `set_options()` for future multi-convention support (pull #899)
+- REF: Extract CF convention logic to `_convention/cf.py` module (pull #899)
 
 
 0.21.0
diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index dbe83dfa..84cf0432 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -90,7 +90,11 @@ def read_crs_auto(
     **kwargs,
 ) -> Optional[rasterio.crs.CRS]:
     """
-    Auto-detect and read CRS by trying all convention readers.
+    Auto-detect and read CRS by trying convention readers.
+
+    If a convention is set globally via set_options(), that convention
+    is tried first for better performance. Then other conventions are
+    tried as fallback.
 
     Parameters
     ----------
@@ -104,7 +108,17 @@ def read_crs_auto(
     rasterio.crs.CRS or None
         CRS object, or None if not found in any convention
     """
-    for convention in _CONVENTION_MODULES.values():
+    # Try the configured convention first (if set)
+    configured_convention = get_option(CONVENTION)
+    if configured_convention is not None:
+        result = _CONVENTION_MODULES[configured_convention].read_crs(obj, **kwargs)
+        if result is not None:
+            return result
+
+    # Try all other conventions
+    for conv_enum, convention in _CONVENTION_MODULES.items():
+        if conv_enum == configured_convention:
+            continue  # Already tried this one
         result = convention.read_crs(obj, **kwargs)
         if result is not None:
             return result
@@ -123,7 +137,11 @@ def read_transform_auto(
     **kwargs,
 ) -> Optional[Affine]:
     """
-    Auto-detect and read transform by trying all convention readers.
+    Auto-detect and read transform by trying convention readers.
+
+    If a convention is set globally via set_options(), that convention
+    is tried first for better performance. Then other conventions are
+    tried as fallback.
 
     Parameters
     ----------
@@ -137,7 +155,19 @@ def read_transform_auto(
     affine.Affine or None
         Transform object, or None if not found in any convention
     """
-    for convention in _CONVENTION_MODULES.values():
+    # Try the configured convention first (if set)
+    configured_convention = get_option(CONVENTION)
+    if configured_convention is not None:
+        result = _CONVENTION_MODULES[configured_convention].read_transform(
+            obj, **kwargs
+        )
+        if result is not None:
+            return result
+
+    # Try all other conventions
+    for conv_enum, convention in _CONVENTION_MODULES.items():
+        if conv_enum == configured_convention:
+            continue  # Already tried this one
         result = convention.read_transform(obj, **kwargs)
         if result is not None:
             return result
@@ -155,7 +185,11 @@ def read_spatial_dimensions_auto(
     obj: Union[xarray.Dataset, xarray.DataArray],
 ) -> Optional[Tuple[str, str]]:
     """
-    Auto-detect and read spatial dimensions by trying all convention readers.
+    Auto-detect and read spatial dimensions by trying convention readers.
+
+    If a convention is set globally via set_options(), that convention
+    is tried first for better performance. Then other conventions are
+    tried as fallback.
 
     Parameters
     ----------
@@ -167,8 +201,19 @@ def read_spatial_dimensions_auto(
     tuple of (y_dim, x_dim) or None
         Tuple of dimension names, or None if not found in any convention
     """
-    for convention in _CONVENTION_MODULES.values():
+    # Try the configured convention first (if set)
+    configured_convention = get_option(CONVENTION)
+    if configured_convention is not None:
+        result = _CONVENTION_MODULES[configured_convention].read_spatial_dimensions(obj)
+        if result is not None:
+            return result
+
+    # Try all other conventions
+    for conv_enum, convention in _CONVENTION_MODULES.items():
+        if conv_enum == configured_convention:
+            continue  # Already tried this one
         result = convention.read_spatial_dimensions(obj)
         if result is not None:
             return result
+
     return None

From 56b466cb68dd7963289f8d3c5f49bae4fc1ac401 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 19:41:31 +0100
Subject: [PATCH 20/29] Refactor code structure for improved readability and
 maintainability

---
 docs/getting_started/crs_management.ipynb | 14 +---------
 rioxarray/_convention/__init__.py         |  2 --
 rioxarray/_convention/cf.py               | 34 ++++++++---------------
 3 files changed, 12 insertions(+), 38 deletions(-)

diff --git a/docs/getting_started/crs_management.ipynb b/docs/getting_started/crs_management.ipynb
index cf4c4bb5..65b583be 100644
--- a/docs/getting_started/crs_management.ipynb
+++ b/docs/getting_started/crs_management.ipynb
@@ -579,12 +579,6 @@
     "- [rio.write_crs()](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.write_crs)\n",
     "- [rio.crs](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.crs)\n",
     "\n",
-    "**Parameters:**\n",
-    "- `input_crs`: Anything accepted by `rasterio.crs.CRS.from_user_input()`\n",
-    "- `grid_mapping_name`: Name of the grid_mapping coordinate (CF convention only)\n",
-    "- `convention`: Override the global convention setting for this call\n",
-    "- `inplace`: If True, modify the object in place\n",
-    "\n",
     "**Note:** It is recommended to use `rio.write_crs()` if you want the CRS to persist on the Dataset/DataArray and to write convention-compliant metadata. Calling only `rio.set_crs()` is lossy and will not modify the Dataset/DataArray metadata."
    ]
   },
@@ -1093,13 +1087,7 @@
     "Use the `rio.write_transform` method to set the transform on your `xarray.Dataset` or `xarray.DataArray`.\n",
     "\n",
     "- [rio.write_transform()](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.write_transform)\n",
-    "- [rio.transform()](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.transform)\n",
-    "\n",
-    "**Parameters:**\n",
-    "- `transform`: The affine transform of the dataset. If not provided, it will be calculated from coordinates.\n",
-    "- `grid_mapping_name`: Name of the grid_mapping coordinate (CF convention only)\n",
-    "- `convention`: Override the global convention setting for this call\n",
-    "- `inplace`: If True, modify the object in place"
+    "- [rio.transform()](../rioxarray.rst#rioxarray.rioxarray.XRasterBase.transform)"
    ]
   },
   {
diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index 84cf0432..c39a6093 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -44,7 +44,6 @@ def read_spatial_dimensions(
     def write_crs(
         obj: Union[xarray.Dataset, xarray.DataArray],
         crs: rasterio.crs.CRS,
-        inplace: bool = True,
         **kwargs,
     ) -> Union[xarray.Dataset, xarray.DataArray]:
         """Write CRS to the object using this convention."""
@@ -54,7 +53,6 @@ def write_crs(
     def write_transform(
         obj: Union[xarray.Dataset, xarray.DataArray],
         transform: Affine,
-        inplace: bool = True,
         **kwargs,
     ) -> Union[xarray.Dataset, xarray.DataArray]:
         """Write transform to the object using this convention."""
diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index 42028a7a..86e75a04 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -193,8 +193,6 @@ def read_spatial_dimensions(
 def write_crs(
     obj: Union[xarray.Dataset, xarray.DataArray],
     crs: rasterio.crs.CRS,
-    *,
-    inplace: bool = True,
     **kwargs,
 ) -> Union[xarray.Dataset, xarray.DataArray]:
     """
@@ -208,8 +206,6 @@ def write_crs(
         Object to write CRS to
     crs : rasterio.crs.CRS
         CRS to write
-    inplace : bool, default True
-        If True, modify object in place
     **kwargs
         grid_mapping_name : str
             Name of the grid_mapping coordinate (required for CF)
@@ -224,19 +220,17 @@ def write_crs(
         # Get grid_mapping from encoding/attrs or use default
         grid_mapping_name = _find_grid_mapping(obj) or DEFAULT_GRID_MAP
 
-    obj_out = obj if inplace else obj.copy(deep=True)
-
     # Get original transform before modifying (pass grid_mapping_name to find it)
     transform = read_transform(obj, grid_mapping=grid_mapping_name)
 
     # Remove old grid mapping coordinate if exists
     try:
-        del obj_out.coords[grid_mapping_name]
+        del obj.coords[grid_mapping_name]
     except KeyError:
         pass
 
     # Add grid mapping coordinate
-    obj_out.coords[grid_mapping_name] = xarray.Variable((), 0)
+    obj.coords[grid_mapping_name] = xarray.Variable((), 0)
     grid_map_attrs = {}
     if get_option(EXPORT_GRID_MAPPING):
         try:
@@ -252,12 +246,12 @@ def write_crs(
         grid_map_attrs["GeoTransform"] = " ".join(
             [str(item) for item in transform.to_gdal()]
         )
-    obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
+    obj.coords[grid_mapping_name].attrs = grid_map_attrs
 
     # Write grid_mapping to encoding (CF specific)
-    obj_out = _write_grid_mapping(obj_out, grid_mapping_name=grid_mapping_name)
+    obj = _write_grid_mapping(obj, grid_mapping_name=grid_mapping_name)
 
-    return obj_out
+    return obj
 
 
 def _write_grid_mapping(
@@ -309,8 +303,6 @@ def _write_grid_mapping(
 def write_transform(
     obj: Union[xarray.Dataset, xarray.DataArray],
     transform: Affine,
-    *,
-    inplace: bool = True,
     **kwargs,
 ) -> Union[xarray.Dataset, xarray.DataArray]:
     """
@@ -324,8 +316,6 @@ def write_transform(
         Object to write transform to
     transform : affine.Affine
         Transform to write
-    inplace : bool, default True
-        If True, modify object in place
     **kwargs
         grid_mapping_name : str
             Name of the grid_mapping coordinate (required for CF)
@@ -340,20 +330,18 @@ def write_transform(
         # Get grid_mapping from encoding/attrs or use default
         grid_mapping_name = _find_grid_mapping(obj) or DEFAULT_GRID_MAP
 
-    obj_out = obj if inplace else obj.copy(deep=True)
-
     try:
-        grid_map_attrs = obj_out.coords[grid_mapping_name].attrs.copy()
+        grid_map_attrs = obj.coords[grid_mapping_name].attrs.copy()
     except KeyError:
-        obj_out.coords[grid_mapping_name] = xarray.Variable((), 0)
-        grid_map_attrs = obj_out.coords[grid_mapping_name].attrs.copy()
+        obj.coords[grid_mapping_name] = xarray.Variable((), 0)
+        grid_map_attrs = obj.coords[grid_mapping_name].attrs.copy()
 
     grid_map_attrs["GeoTransform"] = " ".join(
         [str(item) for item in transform.to_gdal()]
     )
-    obj_out.coords[grid_mapping_name].attrs = grid_map_attrs
+    obj.coords[grid_mapping_name].attrs = grid_map_attrs
 
     # Write grid_mapping to encoding (CF specific)
-    obj_out = _write_grid_mapping(obj_out, grid_mapping_name=grid_mapping_name)
+    obj = _write_grid_mapping(obj, grid_mapping_name=grid_mapping_name)
 
-    return obj_out
+    return obj

From 7194119fcd4ef1faffefc76b9526b3ada185a2ad Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 22:31:16 +0100
Subject: [PATCH 21/29] Update rioxarray/rioxarray.py

Co-authored-by: Alan D. Snow <alansnow21@gmail.com>
---
 rioxarray/rioxarray.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index 5e82ddad..4921363d 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -291,7 +291,6 @@ def write_crs(
         return convention_module.write_crs(
             data_obj,
             data_obj.rio.crs,
-            inplace=True,
             grid_mapping_name=grid_mapping_name,
         )
 

From f733dbc4b8d20b814b9c6edf4df8f96efd19325f Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 22:31:34 +0100
Subject: [PATCH 22/29] Update rioxarray/rioxarray.py

Co-authored-by: Alan D. Snow <alansnow21@gmail.com>
---
 rioxarray/rioxarray.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index 4921363d..7b5c8e0f 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -290,7 +290,7 @@ def write_crs(
         convention_module = _get_convention(convention)
         return convention_module.write_crs(
             data_obj,
-            data_obj.rio.crs,
+            crs=data_obj.rio.crs,
             grid_mapping_name=grid_mapping_name,
         )
 

From 921ceced3bafa6baa4aee2ffd6e66f2babdd60a4 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 22:31:44 +0100
Subject: [PATCH 23/29] Update rioxarray/rioxarray.py

Co-authored-by: Alan D. Snow <alansnow21@gmail.com>
---
 rioxarray/rioxarray.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index 7b5c8e0f..c0c09e1e 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -386,7 +386,7 @@ def write_transform(
         convention_module = _get_convention(convention)
         return convention_module.write_transform(
             data_obj,
-            transform,
+            transform=transform,
             inplace=True,
             grid_mapping_name=grid_mapping_name,
         )

From 10e0019e3d63f3ab287f6bc63440dd0471f91f02 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 22:31:53 +0100
Subject: [PATCH 24/29] Update rioxarray/rioxarray.py

Co-authored-by: Alan D. Snow <alansnow21@gmail.com>
---
 rioxarray/rioxarray.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/rioxarray/rioxarray.py b/rioxarray/rioxarray.py
index c0c09e1e..f1d6e05c 100644
--- a/rioxarray/rioxarray.py
+++ b/rioxarray/rioxarray.py
@@ -387,7 +387,6 @@ def write_transform(
         return convention_module.write_transform(
             data_obj,
             transform=transform,
-            inplace=True,
             grid_mapping_name=grid_mapping_name,
         )
 

From af4efcf1d013a3cbf76844568b8ac599c2324c7e Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 22:33:48 +0100
Subject: [PATCH 25/29] pylint

---
 rioxarray/_convention/__init__.py |    5 -
 rioxarray/_convention/cf.py       |    2 +-
 uv.lock                           | 1890 +++++++++++++++++++++++++++++
 3 files changed, 1891 insertions(+), 6 deletions(-)
 create mode 100644 uv.lock

diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index c39a6093..7b470c31 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -24,21 +24,18 @@ def read_crs(
         obj: Union[xarray.Dataset, xarray.DataArray], **kwargs
     ) -> Optional[rasterio.crs.CRS]:
         """Read CRS from the object using this convention."""
-        ...
 
     @staticmethod
     def read_transform(
         obj: Union[xarray.Dataset, xarray.DataArray], **kwargs
     ) -> Optional[Affine]:
         """Read transform from the object using this convention."""
-        ...
 
     @staticmethod
     def read_spatial_dimensions(
         obj: Union[xarray.Dataset, xarray.DataArray],
     ) -> Optional[Tuple[str, str]]:
         """Read spatial dimensions (y_dim, x_dim) from the object using this convention."""
-        ...
 
     @staticmethod
     def write_crs(
@@ -47,7 +44,6 @@ def write_crs(
         **kwargs,
     ) -> Union[xarray.Dataset, xarray.DataArray]:
         """Write CRS to the object using this convention."""
-        ...
 
     @staticmethod
     def write_transform(
@@ -56,7 +52,6 @@ def write_transform(
         **kwargs,
     ) -> Union[xarray.Dataset, xarray.DataArray]:
         """Write transform to the object using this convention."""
-        ...
 
 
 # Convention modules mapped by Convention enum
diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index 86e75a04..00d06e79 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -164,7 +164,7 @@ def read_spatial_dimensions(
     # Check standard dimension names
     if "x" in obj.dims and "y" in obj.dims:
         return "y", "x"
-    elif "longitude" in obj.dims and "latitude" in obj.dims:
+    if "longitude" in obj.dims and "latitude" in obj.dims:
         return "latitude", "longitude"
 
     # Look for coordinates with CF attributes
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 00000000..54f13645
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,1890 @@
+version = 1
+requires-python = ">=3.12"
+resolution-markers = [
+    "python_full_version >= '3.14' and platform_machine == 'ARM64' and sys_platform == 'win32'",
+    "python_full_version < '3.14' and platform_machine == 'ARM64' and sys_platform == 'win32'",
+    "python_full_version >= '3.14' and platform_machine != 'ARM64' and sys_platform == 'win32'",
+    "python_full_version >= '3.14' and sys_platform == 'emscripten'",
+    "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
+    "python_full_version < '3.14' and platform_machine != 'ARM64' and sys_platform == 'win32'",
+    "python_full_version < '3.14' and sys_platform == 'emscripten'",
+    "python_full_version < '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
+]
+
+[[package]]
+name = "affine"
+version = "2.4.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/69/98/d2f0bb06385069e799fc7d2870d9e078cfa0fa396dc8a2b81227d0da08b9/affine-2.4.0.tar.gz", hash = "sha256:a24d818d6a836c131976d22f8c27b8d3ca32d0af64c1d8d29deb7bafa4da1eea", size = 17132 }
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+]
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+name = "alabaster"
+version = "1.0.0"
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+[[package]]
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+version = "4.0.3"
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+name = "attrs"
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+source = { registry = "https://pypi.org/simple" }
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From 41caadd89986229d78252a3fd89f73e69c510f8e Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Fri, 30 Jan 2026 22:34:09 +0100
Subject: [PATCH 26/29] remove uv.lock

---
 uv.lock | 1890 -------------------------------------------------------
 1 file changed, 1890 deletions(-)
 delete mode 100644 uv.lock

diff --git a/uv.lock b/uv.lock
deleted file mode 100644
index 54f13645..00000000
--- a/uv.lock
+++ /dev/null
@@ -1,1890 +0,0 @@
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From 2fcf2e798699059a468841911a9ef1d39cebb6ed Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Sat, 31 Jan 2026 00:01:32 +0100
Subject: [PATCH 27/29] Add asterisk for keyword-only arguments in write_crs
 and write_transform functions

---
 rioxarray/_convention/cf.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index 00d06e79..db47e14b 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -192,6 +192,7 @@ def read_spatial_dimensions(
 
 def write_crs(
     obj: Union[xarray.Dataset, xarray.DataArray],
+    *,
     crs: rasterio.crs.CRS,
     **kwargs,
 ) -> Union[xarray.Dataset, xarray.DataArray]:
@@ -302,6 +303,7 @@ def _write_grid_mapping(
 
 def write_transform(
     obj: Union[xarray.Dataset, xarray.DataArray],
+    *,
     transform: Affine,
     **kwargs,
 ) -> Union[xarray.Dataset, xarray.DataArray]:

From d35805d30e1c61194960cf77db60100710158078 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Sat, 31 Jan 2026 00:05:18 +0100
Subject: [PATCH 28/29] Refactor write_crs and write_transform functions to use
 keyword-only arguments for clarity

---
 test/unit/test_convention_cf.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/test/unit/test_convention_cf.py b/test/unit/test_convention_cf.py
index 365c3589..7d9eec60 100644
--- a/test/unit/test_convention_cf.py
+++ b/test/unit/test_convention_cf.py
@@ -179,7 +179,7 @@ def test_write_crs():
     data = xarray.DataArray(numpy.random.rand(10, 10), dims=["y", "x"])
     crs = CRS.from_epsg(4326)
 
-    result = cf.write_crs(data, crs, inplace=False, grid_mapping_name="spatial_ref")
+    result = cf.write_crs(data, crs=crs, grid_mapping_name="spatial_ref")
 
     assert "spatial_ref" in result.coords
     assert result.coords["spatial_ref"].attrs["spatial_ref"] == crs.to_wkt()
@@ -192,7 +192,7 @@ def test_write_transform():
     transform = Affine(1.0, 0.0, 0.0, 0.0, -1.0, 10.0)
 
     result = cf.write_transform(
-        data, transform, inplace=False, grid_mapping_name="spatial_ref"
+        data, transform=transform, grid_mapping_name="spatial_ref"
     )
 
     assert "spatial_ref" in result.coords

From bf0e184d85fb4087188e1167ee1f366343c05133 Mon Sep 17 00:00:00 2001
From: Emmanuel Mathot <emmanuel.mathot@gmail.com>
Date: Sat, 31 Jan 2026 08:47:25 +0100
Subject: [PATCH 29/29] satisfy mypy

---
 rioxarray/_convention/__init__.py |  8 +++++---
 rioxarray/_convention/cf.py       | 12 +++++++++++-
 2 files changed, 16 insertions(+), 4 deletions(-)

diff --git a/rioxarray/_convention/__init__.py b/rioxarray/_convention/__init__.py
index 7b470c31..7818ff7b 100644
--- a/rioxarray/_convention/__init__.py
+++ b/rioxarray/_convention/__init__.py
@@ -10,7 +10,7 @@
 import xarray
 from affine import Affine
 
-from rioxarray._convention import cf
+from rioxarray._convention.cf import CFConvention
 from rioxarray._options import CONVENTION, get_option
 from rioxarray.crs import crs_from_user_input
 from rioxarray.enum import Convention
@@ -54,8 +54,10 @@ def write_transform(
         """Write transform to the object using this convention."""
 
 
-# Convention modules mapped by Convention enum
-_CONVENTION_MODULES: Dict[Convention, ConventionProtocol] = {Convention.CF: cf}
+# Convention classes mapped by Convention enum
+_CONVENTION_MODULES: Dict[Convention, ConventionProtocol] = {
+    Convention.CF: CFConvention  # type: ignore[dict-item]
+}
 
 
 def _get_convention(convention: Convention | None) -> ConventionProtocol:
diff --git a/rioxarray/_convention/cf.py b/rioxarray/_convention/cf.py
index db47e14b..37ee278f 100644
--- a/rioxarray/_convention/cf.py
+++ b/rioxarray/_convention/cf.py
@@ -185,7 +185,7 @@ def read_spatial_dimensions(
             y_dim = coord
 
     if x_dim is not None and y_dim is not None:
-        return y_dim, x_dim
+        return str(y_dim), str(x_dim)
 
     return None
 
@@ -347,3 +347,13 @@ def write_transform(
     obj = _write_grid_mapping(obj, grid_mapping_name=grid_mapping_name)
 
     return obj
+
+
+class CFConvention:
+    """CF convention class implementing ConventionProtocol."""
+
+    read_crs = staticmethod(read_crs)
+    read_transform = staticmethod(read_transform)
+    read_spatial_dimensions = staticmethod(read_spatial_dimensions)
+    write_crs = staticmethod(write_crs)
+    write_transform = staticmethod(write_transform)