update submodules and runTests

Remi-Gau · Remi-Gau · commit 6dfb8f260187 · 2022-03-01T16:36:29.000+01:00
diff --git a/.gitignore b/.gitignore
@@ -16,6 +16,10 @@ venv/
 ## visual studio code
 .vscode
 
+# exclude temp files from tests and coverage
+test_report.log
+*coverage*
+
 ## MATLAB / OCTAVE gitignore template
 
 # From : https://github.com/github/gitignore/blob/master/Global/MATLAB.gitignore
diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS
@@ -1 +1 @@
-Subproject commit 46b475f33f26df088a7c6f8a61ed5a540c9bdcfb
+Subproject commit 87353186f2e5f60561e8c1221cdf68f217a3d25a
diff --git a/lib/CPP_PTB b/lib/CPP_PTB
@@ -1 +1 @@
-Subproject commit f4f5519cb5e0661b8559921d3b71a18351250a09
+Subproject commit 9f3ada3b53d456ac6fd471ee4191246136670322
diff --git a/runTests.m b/runTests.m
@@ -6,10 +6,7 @@ function runTests()
 
     tic;
 
-    cd(fileparts(mfilename('fullpath')));
-
-    cfg.verbose = 0;
-    checkCppBidsDependencies(cfg);
+    initEnv();
 
     if bids.internal.is_github_ci
         fprintf(1, '\nThis is github CI\n');
@@ -21,11 +18,9 @@ function runTests()
 
     warning('OFF');
 
-    folderToCover = fullfile(pwd, 'src');
+    folderToCover = fullfile(pwd, 'subfun');
     testFolder = fullfile(pwd, 'tests');
 
-    addpath(fullfile(testFolder, 'utils'));
-
     success = moxunit_runtests(testFolder, ...
                                '-verbose', '-recursive', '-with_coverage', ...
                                '-cover', folderToCover, ...
