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feat: Add backend configuration to DatabaseSettings
Implements Phase 3 of PostgreSQL support: Configuration Updates Changes: - Add backend field to DatabaseSettings with Literal["mysql", "postgresql"] - Port field now auto-detects based on backend (3306 for MySQL, 5432 for PostgreSQL) - Support DJ_BACKEND environment variable via ENV_VAR_MAPPING - Add 11 comprehensive unit tests for backend configuration - Update module docstring with backend usage examples Technical details: - Uses pydantic model_validator to set default port during initialization - Port can be explicitly overridden via DJ_PORT env var or config file - Fully backward compatible: default backend is "mysql" with port 3306 - Backend setting is prepared but not yet used by Connection class (Phase 4) All tests passing (65/65 in test_settings.py) All pre-commit hooks passing Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
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src/datajoint/settings.py

Lines changed: 19 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -15,6 +15,10 @@
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>>> import datajoint as dj
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>>> dj.config.database.host
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'localhost'
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>>> dj.config.database.backend
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'mysql'
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>>> dj.config.database.port # Auto-detects: 3306 for MySQL, 5432 for PostgreSQL
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3306
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>>> with dj.config.override(safemode=False):
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... # dangerous operations here
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... pass
@@ -43,7 +47,7 @@
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from pathlib import Path
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from typing import Any, Iterator, Literal
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from pydantic import Field, SecretStr, field_validator
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from pydantic import Field, SecretStr, field_validator, model_validator
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from pydantic_settings import BaseSettings, SettingsConfigDict
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from .errors import DataJointError
@@ -59,6 +63,7 @@
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"database.host": "DJ_HOST",
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"database.user": "DJ_USER",
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"database.password": "DJ_PASS",
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"database.backend": "DJ_BACKEND",
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"database.port": "DJ_PORT",
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"loglevel": "DJ_LOG_LEVEL",
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}
@@ -182,10 +187,22 @@ class DatabaseSettings(BaseSettings):
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host: str = Field(default="localhost", validation_alias="DJ_HOST")
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user: str | None = Field(default=None, validation_alias="DJ_USER")
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password: SecretStr | None = Field(default=None, validation_alias="DJ_PASS")
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port: int = Field(default=3306, validation_alias="DJ_PORT")
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backend: Literal["mysql", "postgresql"] = Field(
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default="mysql",
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validation_alias="DJ_BACKEND",
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description="Database backend: 'mysql' or 'postgresql'",
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)
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port: int | None = Field(default=None, validation_alias="DJ_PORT")
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reconnect: bool = True
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use_tls: bool | None = None
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@model_validator(mode="after")
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def set_default_port_from_backend(self) -> "DatabaseSettings":
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"""Set default port based on backend if not explicitly provided."""
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if self.port is None:
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self.port = 5432 if self.backend == "postgresql" else 3306
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return self
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class ConnectionSettings(BaseSettings):
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"""Connection behavior settings."""

tests/unit/test_settings.py

Lines changed: 120 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -748,3 +748,123 @@ def test_similar_prefix_names_allowed(self):
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finally:
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dj.config.stores.clear()
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dj.config.stores.update(original_stores)
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class TestBackendConfiguration:
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"""Test database backend configuration and port auto-detection."""
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def test_backend_default(self):
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"""Test default backend is mysql."""
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from datajoint.settings import DatabaseSettings
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settings = DatabaseSettings()
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assert settings.backend == "mysql"
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assert settings.port == 3306
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def test_backend_postgresql(self, monkeypatch):
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"""Test PostgreSQL backend with auto port."""
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from datajoint.settings import DatabaseSettings
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monkeypatch.setenv("DJ_BACKEND", "postgresql")
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settings = DatabaseSettings()
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assert settings.backend == "postgresql"
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assert settings.port == 5432
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def test_backend_explicit_port_overrides(self, monkeypatch):
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"""Test explicit port overrides auto-detection."""
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from datajoint.settings import DatabaseSettings
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monkeypatch.setenv("DJ_BACKEND", "postgresql")
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monkeypatch.setenv("DJ_PORT", "9999")
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settings = DatabaseSettings()
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assert settings.backend == "postgresql"
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assert settings.port == 9999
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def test_backend_env_var(self, monkeypatch):
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"""Test DJ_BACKEND environment variable."""
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from datajoint.settings import DatabaseSettings
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monkeypatch.setenv("DJ_BACKEND", "postgresql")
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settings = DatabaseSettings()
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assert settings.backend == "postgresql"
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assert settings.port == 5432
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def test_port_env_var_overrides_backend_default(self, monkeypatch):
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"""Test DJ_PORT overrides backend auto-detection."""
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from datajoint.settings import DatabaseSettings
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monkeypatch.setenv("DJ_BACKEND", "postgresql")
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monkeypatch.setenv("DJ_PORT", "8888")
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settings = DatabaseSettings()
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assert settings.backend == "postgresql"
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assert settings.port == 8888
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def test_invalid_backend(self, monkeypatch):
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"""Test invalid backend raises validation error."""
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from datajoint.settings import DatabaseSettings
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monkeypatch.setenv("DJ_BACKEND", "sqlite")
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with pytest.raises(ValidationError, match="Input should be 'mysql' or 'postgresql'"):
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DatabaseSettings()
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def test_config_file_backend(self, tmp_path, monkeypatch):
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"""Test loading backend from config file."""
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import json
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from datajoint.settings import Config
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# Include port in config since auto-detection only happens during initialization
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config_file = tmp_path / "test_config.json"
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config_file.write_text(json.dumps({"database": {"backend": "postgresql", "host": "db.example.com", "port": 5432}}))
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# Clear env vars so file values take effect
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monkeypatch.delenv("DJ_BACKEND", raising=False)
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monkeypatch.delenv("DJ_HOST", raising=False)
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monkeypatch.delenv("DJ_PORT", raising=False)
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cfg = Config()
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cfg.load(config_file)
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assert cfg.database.backend == "postgresql"
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assert cfg.database.port == 5432
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assert cfg.database.host == "db.example.com"
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def test_global_config_backend(self):
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"""Test global config has backend configuration."""
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# Global config should have backend field with default mysql
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assert hasattr(dj.config.database, "backend")
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# Backend should be one of the valid values
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assert dj.config.database.backend in ["mysql", "postgresql"]
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# Port should be set (either 3306 or 5432 or custom)
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assert isinstance(dj.config.database.port, int)
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assert 1 <= dj.config.database.port <= 65535
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def test_port_auto_detection_on_initialization(self):
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"""Test port auto-detects only during initialization, not on live updates."""
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from datajoint.settings import DatabaseSettings
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# Start with MySQL (default)
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settings = DatabaseSettings()
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assert settings.port == 3306
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# Change backend on live config - port won't auto-update
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settings.backend = "postgresql"
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# Port remains at previous value (this is expected behavior)
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# Users should set port explicitly when changing backend on live config
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assert settings.port == 3306 # Didn't auto-update
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def test_mysql_backend_with_explicit_port(self, monkeypatch):
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"""Test MySQL backend with explicit non-default port."""
857+
from datajoint.settings import DatabaseSettings
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monkeypatch.setenv("DJ_BACKEND", "mysql")
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monkeypatch.setenv("DJ_PORT", "3307")
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settings = DatabaseSettings()
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assert settings.backend == "mysql"
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assert settings.port == 3307
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def test_backend_field_in_env_var_mapping(self):
866+
"""Test that backend is mapped to DJ_BACKEND in ENV_VAR_MAPPING."""
867+
from datajoint.settings import ENV_VAR_MAPPING
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869+
assert "database.backend" in ENV_VAR_MAPPING
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assert ENV_VAR_MAPPING["database.backend"] == "DJ_BACKEND"

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