Synchronized with the source at 6204217.

pavoljuhas · pavoljuhas · commit dcebfa8a0ee9 · 2016-06-16T15:22:23.000-04:00
diff --git a/_sources/index.txt b/_sources/index.txt
@@ -15,7 +15,7 @@
 
 
 
-DiffPy - Atomic Structure Analysis in Python 
+DiffPy - Atomic Structure Analysis in Python
 ============================================
 A free and open source software project to provide python software for
 diffraction analysis and the study of the atomic structure of materials.
@@ -29,14 +29,14 @@ diffraction analysis and the study of the atomic structure of materials.
 .. include:: abbreviations.txt
 
 DiffPy is the home of the |DiffPyCMI|
-Complex Modeling framework, a modular software framework for robust and extensible 
-modeling of diffraction data.  We welcome contributions to this project from the 
+Complex Modeling framework, a modular software framework for robust and extensible
+modeling of diffraction data.  We welcome contributions to this project from the
 community.
 
-The project is currently centered at `Brookhaven National Laboratory`_, a US `Department of 
-Energy, Office of Basic Energy Sciences`_ funded laboratory. 
+The project is currently centered at `Brookhaven National Laboratory`_, a US `Department of
+Energy, Office of Basic Energy Sciences`_ funded laboratory.
 Many parts of the code were developed under the diffraction part of the DANSE_ project,
-a software construction project funded by the `National Science Foundation`_ to provide 
+a software construction project funded by the `National Science Foundation`_ to provide
 data analysis software tools for neutron scattering experiments.  This project was previously
 centered at Columbia University and, before that, Michigan State University.
 
@@ -56,7 +56,7 @@ centered at Columbia University and, before that, Michigan State University.
    :height: 10
 
 .. figure:: logos/BNL_logo.jpg
-   :align: left 
+   :align: left
    :target: `Brookhaven National Laboratory`_
 
 .. figure:: logos/DOE_logo.png
@@ -80,6 +80,6 @@ centered at Columbia University and, before that, Michigan State University.
    products/xPDFsuite
    products/pdfgui
    products/pdfgetx3
-   products/pythonpackages 
+   products/pythonpackages
    products/SrMise
    products/mPDF
diff --git a/_sources/products/SrMiselicense.txt b/_sources/products/SrMiselicense.txt
@@ -1,4 +1,6 @@
 .. this page only contains the LICENSE text for SrMise
 
+.. title:: SrMise License
+
 .. literalinclude:: SrMise_LICENSE.txt
    :language: text
diff --git a/_sources/products/diffpycmi/index.txt b/_sources/products/diffpycmi/index.txt
@@ -48,7 +48,6 @@ from http://www.continuum.io/downloads.
       conda create --name=py27 python=2.7
       source activate py27
 
-      
 Once Anaconda is ready, DiffPy-CMI can be installed from the "diffpy"
 channel of Anaconda packages as follows ::
 
diff --git a/_sources/products/diffpycmi/license.txt b/_sources/products/diffpycmi/license.txt
@@ -1,4 +1,6 @@
 .. this page only contains the LICENSE text for DiffPy-CMI
 
+.. title:: DiffPy-CMI License
+
 .. literalinclude:: LICENSE.txt
    :language: text
diff --git a/_sources/products/mPDF.txt b/_sources/products/mPDF.txt
@@ -42,7 +42,7 @@ Installation
 The recommended way to install this package is through conda. For help installing conda,
 please visit `https://www.continuum.io/downloads <https://www.continuum.io/downloads>`__.
 Once conda is installed, you can follow the simple steps below to install diffpy.mpdf.
-You will also install the full diffpy-cmi suite along the way. 
+You will also install the full diffpy-cmi suite along the way.
 
 *Step 1: Add the appropriate conda channels to your conda configuration.* ::
 
@@ -59,14 +59,14 @@ find the appropriate software.
 
 Note that you can name the environment anything you choose by passing it a different name
 after the --name flag in the first command.
-    
+
 *Step 3: Install diffpy.mpdf.* ::
 
     conda install diffpy.mpdf
 
 Note that this will also install the full diffpy-cmi suite if it has not already been
 installed in this environment.
-    
+
 *Alternative option: Install from the python package index.*
 
 If you prefer to use the python package index and have pip installed, please install the
diff --git a/_sources/products/mPDFlicense.txt b/_sources/products/mPDFlicense.txt
@@ -1,4 +1,6 @@
 .. this page only contains the LICENSE text for mPDF
 
+.. title:: mPDF License
+
 .. literalinclude:: mPDF_LICENSE.txt
    :language: text
diff --git a/_sources/products/pdfgui.txt b/_sources/products/pdfgui.txt
@@ -48,7 +48,7 @@ https://www.continuum.io/downloads.
 
       conda create --name=py27 python=2.7
       source activate py27
-      
+
    On Windows use just ``activate py27``.  Make sure that *py27*
    environment is activated in your shell prior to running
    the "install" or "update" commands below.
diff --git a/_sources/products/pdfguilicense.txt b/_sources/products/pdfguilicense.txt
@@ -1,4 +1,6 @@
 .. this page only contains the LICENSE text for PDFgui
 
+.. title:: PDFgui License
+
 .. literalinclude:: PDFgui_LICENSE.txt
    :language: text
diff --git a/_sources/publications.txt b/_sources/publications.txt
@@ -24,6 +24,12 @@ Publications using DiffPy-CMI
 The following papers made use of DiffPy developed software for analysis
 and/or modeling.
 
+* |citeJensenNc16|
+
+* |citeFrandsenPrl16|
+
+* |citeTerbanCgd16|
+
 * |citePrillAca16|
 
 * |citeTerbanNan15|
diff --git a/products/SrMiselicense.html b/products/SrMiselicense.html
@@ -6,7 +6,7 @@
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
     
-    <title>&lt;no title&gt; &mdash; DiffPy  documentation</title>
+    <title>SrMise License &mdash; DiffPy  documentation</title>
     
     <link rel="stylesheet" href="../_static/basic.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
diff --git a/products/diffpycmi/license.html b/products/diffpycmi/license.html
@@ -6,7 +6,7 @@
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
     
-    <title>&lt;no title&gt; &mdash; DiffPy  documentation</title>
+    <title>DiffPy-CMI License &mdash; DiffPy  documentation</title>
     
     <link rel="stylesheet" href="../../_static/basic.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
diff --git a/products/mPDFlicense.html b/products/mPDFlicense.html
@@ -6,7 +6,7 @@
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
     
-    <title>&lt;no title&gt; &mdash; DiffPy  documentation</title>
+    <title>mPDF License &mdash; DiffPy  documentation</title>
     
     <link rel="stylesheet" href="../_static/basic.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
diff --git a/products/pdfguilicense.html b/products/pdfguilicense.html
@@ -6,7 +6,7 @@
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
     
-    <title>&lt;no title&gt; &mdash; DiffPy  documentation</title>
+    <title>PDFgui License &mdash; DiffPy  documentation</title>
     
     <link rel="stylesheet" href="../_static/basic.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
diff --git a/publications.html b/publications.html
@@ -144,9 +144,25 @@ <h1>Publications using DiffPy-CMI<a class="headerlink" href="#publications-using
 <p>The following papers made use of DiffPy developed software for analysis
 and/or modeling.</p>
 <ul class="simple">
-<li>Dragica Prill, Pavol Juhas, S. J. L. Billinge and Martin U. Schmidt,
-<a class="reference external" href="https://dx.doi.org/10.1107/S2053273315022457">Solution and refinement of organic crystal structures by fitting to
-the atomic pair distribution function (PDF)</a>,
+<li>Kirsten M. Ø. Jensen, Pavol Juhás, Marcus A. Tofanelli,
+Christine L. Heinecke, Gavin Vaughan, Christopher J. Ackerson,
+Simon J. L. Billinge,
+<a class="reference external" href="http://dx.doi.org/10.1038/ncomms11859">Polymorphism in magic-sized Au<sub>144</sub>(SR)<sub>60</sub> clusters</a>,
+<em>Nat. Commun.</em> <strong>7</strong> (2016)</li>
+<li>Benjamin A. Frandsen, Michela Brunelli, Katharine Page,
+Yasutomo J. Uemura, Julie B. Staunton, Simon J. L. Billinge,
+<a class="reference external" href="http://link.aps.org/doi/10.1103/PhysRevLett.116.197204">Verification of Anderson Superexchange in MnO via magnetic pair
+distribution function analysis and <em>ab initio</em> theory</a>,
+<em>Phys. Rev. Lett.</em> <strong>116</strong>, 197204 (2016).</li>
+<li>Maxwell W. Terban, Eugene Y. Cheung, Paul Krolikowski,
+Simon J. L. Billinge,
+<a class="reference external" href="http://dx.doi.org/10.1021/acs.cgd.5b01100">Recrystallization, phase composition, and local structure of
+amorphous lactose from the total scattering pair distribution
+function</a>,
+<em>Cryst. Growth Des.</em> <strong>16</strong>, 210-220 (2016).</li>
+<li>Dragica Prill, Pavol Juhás, Simon J. L. Billinge and Martin U. Schmidt,
+<a class="reference external" href="https://dx.doi.org/10.1107/S2053273315022457">Towards solution and refinement of organic crystal structures by
+fitting to the atomic pair distribution function</a>,
 <em>Acta Crystallogr. A</em> <strong>72</strong>, 62-72 (2016).</li>
 <li>Maxwell W. Terban, Matthew Johnson, Marco Di Michiel and Simon J. L.
 Billinge, <a class="reference external" href="http://dx.doi.org/10.1039/C4NR06486K">Detection and characterization of nanoparticles in suspension at
@@ -180,7 +196,7 @@ <h1>Publications using DiffPy-CMI<a class="headerlink" href="#publications-using
 <a class="reference external" href="http://link.aps.org/doi/10.1103/PhysRevLett.112.125501">Structure of nanocrystalline Ti<sub>3</sub>C<sub>2</sub> MXene using
 atomic pair distribution function</a>,
 <em>Phys. Rev. Lett.</em> <strong>112</strong>, 125501 (2014).</li>
-<li>Christoper L. Farrow, Chenyang Shi, Pavol Juhás, Xiaogang Peng, and
+<li>Christopher L. Farrow, Chenyang Shi, Pavol Juhás, Xiaogang Peng, and
 Simon J. L. Billinge, <a class="reference external" href="http://dx.doi.org/10.1107/S1600576713034055">Robust structure and morphology parameters for
 CdS nanoparticles by combining small angle X-ray scattering and atomic
 pair distribution function data in a complex modeling framework</a>,
diff --git a/searchindex.js b/searchindex.js
