From e540c9e39147b061ffbfba3c2ac807ed1c75050b Mon Sep 17 00:00:00 2001 From: epiforecasts-bot Date: Sat, 1 Nov 2025 05:05:31 +0000 Subject: [PATCH] Automated update of team publications --- _data/papers.bib | 174 ++++++++++++++++++++++++++++++++++++++--------- 1 file changed, 141 insertions(+), 33 deletions(-) diff --git a/_data/papers.bib b/_data/papers.bib index 4ab54bf..6c4b6dc 100644 --- a/_data/papers.bib +++ b/_data/papers.bib @@ -19,6 +19,9 @@ @Article{Funk_2019 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -41,6 +44,9 @@ @Article{Camacho_2015 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -66,6 +72,9 @@ @Article{Finger_2019 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -92,6 +101,9 @@ @Article{Hellewell_2020 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -117,6 +129,9 @@ @Article{Abbott_2020 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -142,6 +157,9 @@ @Article{Abbott_2020 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -167,6 +185,9 @@ @Article{Munday_2021 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -192,6 +213,9 @@ @Article{Sherratt_2021 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -217,6 +241,9 @@ @Article{Endo_2020 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -242,6 +269,9 @@ @Article{Endo_2021 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -267,6 +297,9 @@ @Article{Bracher2021 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, ISSN = {2041-1723}, N = {1}, ID = {1}, @@ -294,6 +327,9 @@ @Article{Pavelka_2021 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -315,6 +351,9 @@ @Article{Hart_2022 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -336,6 +375,9 @@ @Article{Meakin_2022 N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -357,6 +399,9 @@ @Article{pure_pipit N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -378,6 +423,9 @@ @Article{gangly_boubou N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -399,6 +447,9 @@ @Article{pharmaceutical_phoebe N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -420,6 +471,9 @@ @Article{irrationalistic_myotis N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -441,6 +495,9 @@ @Article{cleansable_armednylonshrimp N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -462,6 +519,9 @@ @Article{semiparalysis_olingo N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -483,6 +543,9 @@ @Article{malevolent_babirusa N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -504,6 +567,9 @@ @Article{gentlewomanly_bandicoot N.2 = {1}, ID.2 = {1}, N_PP.2 = {0}, + N.3 = {1}, + ID.3 = {1}, + N_PP.3 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -522,6 +588,9 @@ @Article{basehearted_bluejay N.1 = {1}, ID.1 = {1}, N_PP.1 = {1}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {1}, N = {1}, ID = {1}, N_PP = {1} @@ -540,24 +609,9 @@ @Article{red_waterbuffalo N.1 = {1}, ID.1 = {1}, N_PP.1 = {1}, - N = {1}, - ID = {1}, - N_PP = {1} -} - - -@Article{wellloved_anophelesmosquito, - AUTHOR = {Katharine Sherratt and Ajitesh Srivastava and Kylie Ainslie and David E. Singh and Aymar Cublier and Maria Cristina Marinescu and Jesus Carretero and Alberto Cascajo Garcia and Nicolas Franco and Lander Willem and Steven Abrams and Christel Faes and Philippe Beutels and Niel Hens and Sebastian Müller and Billy Charlton and Ricardo Ewert and Sydney Paltra and Christian Rakow and Jakob Rehmann and Tim Conrad and Christof Schütte and Kai Nagel and Sam Abbott and Rok Grah and Rene Niehus and Bastian Prasse and Frank Sandmann and Sebastian Funk}, - JOURNAL = {medRxiv}, - TITLE = {Characterising information gains and losses when collecting multiple epidemic model outputs}, - YEAR = {2023}, - DOI = {10.1101/2023.07.05.23292245}, - N = {1}, - N_PP = {1}, - ID = {1}, - N.1 = {1}, - ID.1 = {1}, - N_PP.1 = {1}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {1}, N = {1}, ID = {1}, N_PP = {1} @@ -576,6 +630,9 @@ @Article{sociological_imperatorangel N.1 = {1}, ID.1 = {1}, N_PP.1 = {1}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {1}, N = {1}, ID = {1}, N_PP = {1} @@ -594,6 +651,9 @@ @Article{cushy_joey N.1 = {1}, ID.1 = {1}, N_PP.1 = {0}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -612,6 +672,9 @@ @Article{magnesium_titmouse N.1 = {1}, ID.1 = {1}, N_PP.1 = {1}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {1}, N = {1}, ID = {1}, N_PP = {1} @@ -630,6 +693,9 @@ @Article{powderblue_mouflon N.1 = {1}, ID.1 = {1}, N_PP.1 = {0}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -648,6 +714,9 @@ @Article{unlucky_shark N.1 = {1}, ID.1 = {1}, N_PP.1 = {0}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -666,6 +735,9 @@ @Article{marginal_sturgeon N.1 = {1}, ID.1 = {1}, N_PP.1 = {0}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -684,6 +756,9 @@ @Article{subpericardiac_fish N.1 = {1}, ID.1 = {1}, N_PP.1 = {1}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {1}, N = {1}, ID = {1}, N_PP = {1} @@ -702,6 +777,9 @@ @Article{threatful_irishdraughthorse N.1 = {1}, ID.1 = {1}, N_PP.1 = {0}, + N.2 = {1}, + ID.2 = {1}, + N_PP.2 = {0}, N = {1}, ID = {1}, N_PP = {0} @@ -711,55 +789,85 @@ @Article{threatful_irishdraughthorse @Article{sherratt24_characterising, AUTHOR = {Katharine Sherratt and Ajitesh Srivastava and Kylie Ainslie and David E. Singh and Aymar Cublier and Maria Cristina Marinescu and Jesus Carretero and Alberto Cascajo Garcia and Nicolas Franco and Lander Willem and Steven Abrams and Christel Faes and Philippe Beutels and Niel Hens and Sebastian Müller and Billy Charlton and Ricardo Ewert and Sydney Paltra and Christian Rakow and Jakob Rehmann and Tim Conrad and Christof Schütte and Kai Nagel and Sam Abbott and Rok Grah and Rene Niehus and Bastian Prasse and Frank Sandmann and Sebastian Funk}, JOURNAL = {Epidemics}, - TITLE = {Characterising information gains and losses when collecting multiple epidemic model outputs}, MONTH = {jun}, PAGES = {}, PUBLISHER = {Elsevier BV}, - TITLE = {}, + TITLE = {Characterising information gains and losses when collecting multiple epidemic model outputs}, VOLUME = {47}, YEAR = {2024}, DOI = {10.1016/j.epidem.2024.100765}, N = {2}, + N_PP = {0}, ID = {1}, + N.1 = {1}, + ID.1 = {1}, ISSN = {1755-4365}, + TITLE.1 = {}, URL = {http://dx.doi.org/10.1016/j.epidem.2024.100765}, + N = {2}, + ID = {2}, + N_PP = {1} +} + + +@Article{restorable_cheetah, + AUTHOR = {Friederike Becker and Katharine Sherratt and Nikos I. Bosse and Sebastian Funk}, + JOURNAL = {medRxiv}, + TITLE = {The influence of ensemble size and composition on the performance of combined real-time COVID-19 forecasts}, + YEAR = {2025}, + DOI = {10.1101/2025.08.09.25331484}, N = {1}, + N_PP = {1}, ID = {1}, - N_PP = {0} + N = {1}, + ID = {1}, + N_PP = {1} } -@Article{pseudohistorical_sable, +@Article{werewolflike_italiangreyhound, AUTHOR = {Kaitlyn E. Johnson and Maria L. Tang and Emily Tyszka and Laura Jones and Barbora Nemcova and Daniel Wolffram and Rosa Ergas and Nicholas G. Reich and Sebastian Funk and Jonathon Mellor and Johannes Bracher and Sam Abbott}, JOURNAL = {medRxiv}, TITLE = {Baseline nowcasting methods for handling delays in epidemiological data}, YEAR = {2025}, DOI = {10.1101/2025.08.14.25333653}, + N = {2}, + ID = {2}, + N_PP = {2} +} + + +@Article{spherelike_stonefly, + AUTHOR = {Duaa Rao and Aleena Tanveer and Emil Nafis Iftekhar and Sophie Alice Müller and Katharine Sherratt and Klara Röbl and Paola Carrillo-Bustamante and Katharina Heldt and Julia Fitzner and Johanna Hanefeld and Sebastian Funk}, + JOURNAL = {PLOS Global Public Health}, + TITLE = {The utility of infectious disease modelling in informing decisions for outbreak response: A scoping review}, + YEAR = {2025}, + DOI = {10.1371/journal.pgph.0005120}, N = {1}, ID = {1}, - N_PP = {1} + N_PP = {0} } -@Article{restorable_cheetah, - AUTHOR = {Friederike Becker and Katharine Sherratt and Nikos I. Bosse and Sebastian Funk}, - JOURNAL = {medRxiv}, - TITLE = {The influence of ensemble size and composition on the performance of combined real-time COVID-19 forecasts}, +@Article{empirical_lemming, + AUTHOR = {Katharine Sherratt and Anna C. Carnegie and Adam Kucharski and Anne Cori and Carl A. B. Pearson and Edward M. Hill and Elizabeth Fearon and Emily Nightingale and Julian Villabona-Arenas and Li Pi and Nicholas G. Davies and Sabine {van Elsland} and Sebastian Funk and Yang Liu and Sam Abbott}, + JOURNAL = {Interface Focus}, + TITLE = {Improving modelling for epidemic response: a progress update from a community of UK infectious disease modellers}, YEAR = {2025}, - DOI = {10.1101/2025.08.09.25331484}, + DOI = {10.1098/rsfs.2025.0007}, N = {1}, ID = {1}, - N_PP = {1} + N_PP = {0} } -@Article{rubied_caudata, +@Article{rear_plainsqueaker, AUTHOR = {Manuel Stapper and Sebastian Funk}, JOURNAL = {medRxiv}, TITLE = {Mind the Baseline: The Hidden Impact of Reference Model Selection on Forecast Assessment}, YEAR = {2025}, DOI = {10.1101/2025.08.01.25332807}, - N = {1}, - ID = {1}, - N_PP = {1} + N = {2}, + ID = {2}, + N_PP = {2} }