Hi 👋 !
I am one of the project leads for mybinder.org and saw you are doing some fairly complex stuff in your Dockerfile as well as rebuilding the repo a lot. Wanted to point you towards http://repo2docker.readthedocs.io/ which is the tool we use on mybinder.org that you can run locally. I find that with running it locally I get much faster turn around on debugging and easier to read logs. I don't know if you are debugging, just an educated guess :)
Super cool to see people from eurostat interested in Binder and making the data you have easier to access!