Played through the whole game 100% on my Steam Deck using the flatpack version of the game, also using the redub mod. 90% of the game ran great, but at key points in the game, there was significant slowdown to the audio, framerate was unaffected. First really noticeable location was Tsurumi bossfight. I think it might be related to transparency. Would also sometimes happen during mech battles. There were a few rooms in the gourmet submarine dungeon this was apparent too.