Merge pull request #2589 from QuentinCody/add-quentin-mcp-servers

Add 12 bioinformatics and research MCP servers to community section

Author: olaservo

README.md

@@ -555,6 +555,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[ChessPal Chess Engine (stockfish)](https://github.com/wilson-urdaneta/chesspal-mcp-engine)** - A Stockfish-powered chess engine exposed as an MCP server. Calculates best moves and supports both HTTP/SSE and stdio transports.
 - **[Chroma](https://github.com/privetin/chroma)** - Vector database server for semantic document search and metadata filtering, built on Chroma
 - **[Chrome history](https://github.com/vincent-pli/chrome-history-mcp)** - Talk with AI about your browser history, get fun ^_^
+- **[CIViC](https://github.com/QuentinCody/civic-mcp-server)** - MCP server for the Clinical Interpretation of Variants in Cancer (CIViC) database, providing access to clinical variant interpretations and genomic evidence for cancer research.
 - **[Claude Thread Continuity](https://github.com/peless/claude-thread-continuity)** - Persistent memory system enabling Claude Desktop conversations to resume with full context across sessions. Maintains conversation history, project states, and user preferences for seamless multi-session workflows.
 - **[ClaudePost](https://github.com/ZilongXue/claude-post)** - ClaudePost enables seamless email management for Gmail, offering secure features like email search, reading, and sending.
 - **[CLDGeminiPDF Analyzer](https://github.com/tfll37/CLDGeminiPDF-Analyzer)** - MCP server tool enabling sharing large PDF files to Google LLMs via API for further/additional analysis and response retrieval to Claude Desktop.
@@ -596,6 +597,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[Databricks](https://github.com/JordiNeil/mcp-databricks-server)** - Allows LLMs to run SQL queries, list and get details of jobs executions in a Databricks account.
 - **[Databricks Genie](https://github.com/yashshingvi/databricks-genie-MCP)** - A server that connects to the Databricks Genie, allowing LLMs to ask natural language questions, run SQL queries, and interact with Databricks conversational agents.
 - **[Databricks Smart SQL](https://github.com/RafaelCartenet/mcp-databricks-server)** - Leveraging Databricks Unity Catalog metadata, perform smart efficient SQL queries to solve Ad-hoc queries and explore data.
+- **[DataCite](https://github.com/QuentinCody/datacite-mcp-server)** - Unofficial MCP server for DataCite, providing access to research data and publication metadata through DataCite's REST API and GraphQL interface for scholarly research discovery.
 - **[Datadog](https://github.com/GeLi2001/datadog-mcp-server)** - Datadog MCP Server for application tracing, monitoring, dashboard, incidents queries built on official datadog api.
 - **[Dataset Viewer](https://github.com/privetin/dataset-viewer)** - Browse and analyze Hugging Face datasets with features like search, filtering, statistics, and data export
 - **[DataWorks](https://github.com/aliyun/alibabacloud-dataworks-mcp-server)** - A Model Context Protocol (MCP) server that provides tools for AI, allowing it to interact with the [DataWorks](https://www.alibabacloud.com/help/en/dataworks/) Open API through a standardized interface. This implementation is based on the Alibaba Cloud Open API and enables AI agents to perform cloud resources operations seamlessly.
@@ -614,6 +616,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[DevDb](https://github.com/damms005/devdb-vscode?tab=readme-ov-file#mcp-configuration)** - An MCP server that runs right inside the IDE, for connecting to MySQL, Postgres, SQLite, and MSSQL databases.
 - **[DevOps AI Toolkit](https://github.com/vfarcic/dot-ai)** - AI-powered development productivity platform that enhances software development workflows through intelligent automation and AI-driven assistance.
 - **[DevOps-MCP](https://github.com/wangkanai/devops-mcp)** - Dynamic Azure DevOps MCP server with directory-based authentication switching, supporting work items, repositories, builds, pipelines, and multi-project management with local configuration files.
+- **[DGIdb](https://github.com/QuentinCody/dgidb-mcp-server)** - MCP server for the Drug Gene Interaction Database (DGIdb), providing access to drug-gene interaction data, druggable genome information, and pharmacogenomics research.
 - **[Dicom](https://github.com/ChristianHinge/dicom-mcp)** - An MCP server to query and retrieve medical images and for parsing and reading dicom-encapsulated documents (pdf etc.). 
 - **[Dify](https://github.com/YanxingLiu/dify-mcp-server)** - A simple implementation of an MCP server for dify workflows.
 - **[Discogs](https://github.com/cswkim/discogs-mcp-server)** - An MCP server that connects to the Discogs API for interacting with your music collection.
@@ -643,6 +646,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[Email](https://github.com/Shy2593666979/mcp-server-email)** - This server enables users to send emails through various email providers, including Gmail, Outlook, Yahoo, Sina, Sohu, 126, 163, and QQ Mail. It also supports attaching files from specified directories, making it easy to upload attachments along with the email content.
 - **[Email SMTP](https://github.com/egyptianego17/email-mcp-server)** - A simple MCP server that lets your AI agent send emails and attach files through SMTP.
 - **[Enhance Prompt](https://github.com/FelixFoster/mcp-enhance-prompt)** - An MCP service for enhance you prompt.
+- **[Entrez](https://github.com/QuentinCody/entrez-mcp-server)** - Unofficial MCP server for NCBI Entrez databases, providing access to PubMed articles, gene information, protein data, and other biomedical research resources through NCBI's E-utilities API.
 - **[Ergo Blockchain MCP](https://github.com/marctheshark3/ergo-mcp)** -An MCP server to integrate Ergo Blockchain Node and Explorer APIs for checking address balances, analyzing transactions, viewing transaction history, performing forensic analysis of addresses, searching for tokens, and monitoring network status.
 - **[ESP MCP Server](https://github.com/horw/esp-mcp)** - An MCP server that integrates ESP IDF commands like building and flashing code for ESP Microcontrollers using an LLM.
 - **[Eunomia](https://github.com/whataboutyou-ai/eunomia-MCP-server)** - Extension of the Eunomia framework that connects Eunomia instruments with MCP servers
@@ -922,6 +926,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[NAVER](https://github.com/pfldy2850/py-mcp-naver)** (by pfldy2850) - This MCP server provides tools to interact with various Naver services, such as searching blogs, news, books, and more.
 - **[Naver](https://github.com/isnow890/naver-search-mcp)** (by isnow890) - MCP server for Naver Search API integration, supporting blog, news, shopping search and DataLab analytics features.
 - **[NBA](https://github.com/Taidgh-Robinson/nba-mcp-server)** - This MCP server provides tools to fetch recent and historical NBA games including basic and advanced statistics.
+- **[NCI GDC](https://github.com/QuentinCody/nci-gdc-mcp-server)** - Unofficial MCP server for the National Cancer Institute's Genomic Data Commons (GDC), providing access to harmonized cancer genomic and clinical data for oncology research.
 - **[Neo4j](https://github.com/da-okazaki/mcp-neo4j-server)** - A community built server that interacts with Neo4j Graph Database.
 - **[Neovim](https://github.com/bigcodegen/mcp-neovim-server)** - An MCP Server for your Neovim session.
 - **[Netbird](https://github.com/aantti/mcp-netbird)** - List and analyze Netbird network peers, groups, policies, and more.
@@ -963,9 +968,11 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[OpenLink Generic Python Open Database Connectivity](https://github.com/OpenLinkSoftware/mcp-pyodbc-server)** - Generic Database Management System (DBMS) access via Open Database Connectivity (ODBC) Connectors (Drivers) for PyODBC
 - **[OpenLink Generic SQLAlchemy Object-Relational Database Connectivity for PyODBC](https://github.com/OpenLinkSoftware/mcp-sqlalchemy-server)** - Generic Database Management System (DBMS) access via SQLAlchemy (PyODBC) Connectors (Drivers)
 - **[OpenMetadata](https://github.com/yangkyeongmo/mcp-server-openmetadata)** - MCP Server for OpenMetadata, an open-source metadata management platform.
+- **[OpenNeuro](https://github.com/QuentinCody/open-neuro-mcp-server)** - Unofficial MCP server for OpenNeuro, providing access to open neuroimaging datasets, study metadata, and brain imaging data for neuroscience research and analysis.
 - **[OpenReview](https://github.com/anyakors/openreview-mcp-server)** - An MCP server for [OpenReview](https://openreview.net/) to fetch, read and save manuscripts from AI/ML conferences.
 - **[OpenRPC](https://github.com/shanejonas/openrpc-mpc-server)** - Interact with and discover JSON-RPC APIs via [OpenRPC](https://open-rpc.org).
 - **[OpenStack](https://github.com/wangsqly0407/openstack-mcp-server)** - MCP server implementation that provides OpenStack interaction.
+- **[Open Targets](https://github.com/QuentinCody/open-targets-mcp-server)** - Unofficial MCP server for the Open Targets Platform, providing access to target-disease associations, drug discovery data, and therapeutic hypothesis generation for biomedical research.
 - **[OpenWeather](https://github.com/mschneider82/mcp-openweather)** - Interact with the free openweathermap API to get the current and forecast weather for a location.
 - **[Operative WebEvalAgent](https://github.com/Operative-Sh/web-eval-agent)** (by [Operative.sh](https://www.operative.sh)) - An MCP server to test, debug, and fix web applications autonomously.
 - **[OPNSense MCP](https://github.com/vespo92/OPNSenseMCP)** - MCP Server for OPNSense Firewall Management and API access
@@ -987,6 +994,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[PDMT](https://github.com/paiml/pdmt)** - Pragmatic Deterministic MCP Templating - High-performance deterministic templating library with comprehensive todo validation, quality enforcement, and 0.0 temperature generation for reproducible outputs.
 - **[Peacock for VS Code](https://github.com/johnpapa/peacock-mcp)** - MCP Server for the Peacock extension for VS Code, coloring your world, one Code editor at a time. The main goal of the project is to show how an MCP server can be used to interact with APIs.
 - **[persistproc](https://github.com/irskep/persistproc)** - MCP server + command line tool that allows agents to see & control long-running processes like web servers.
+- **[Pharos](https://github.com/QuentinCody/pharos-mcp-server)** - Unofficial MCP server for the Pharos database by the National Center for Advancing Translational Sciences (NCATS), providing access to target, drug, and disease information for drug discovery research.
 - **[Phone MCP](https://github.com/hao-cyber/phone-mcp)** - 📱 A powerful plugin that lets you control your Android phone. Enables AI agents to perform complex tasks like automatically playing music based on weather or making calls and sending texts.
 - **[PIF](https://github.com/hungryrobot1/MCP-PIF)** - A Personal Intelligence Framework (PIF), providing tools for file operations, structured reasoning, and journal-based documentation to support continuity and evolving human-AI collaboration across sessions.
 - **[Pinecone](https://github.com/sirmews/mcp-pinecone)** - MCP server for searching and uploading records to Pinecone. Allows for simple RAG features, leveraging Pinecone's Inference API.
@@ -1024,6 +1032,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[RAG Web Browser](https://github.com/apify/mcp-server-rag-web-browser)** An MCP server for Apify's open-source RAG Web Browser [Actor](https://apify.com/apify/rag-web-browser) to perform web searches, scrape URLs, and return content in Markdown.
 - **[Raindrop.io](https://github.com/hiromitsusasaki/raindrop-io-mcp-server)** - An integration that allows LLMs to interact with Raindrop.io bookmarks using the Model Context Protocol (MCP).
 - **[Random Number](https://github.com/zazencodes/random-number-mcp)** - Provides LLMs with essential random generation abilities, built entirely on Python's standard library.
+- **[RCSB PDB](https://github.com/QuentinCody/rcsb-pdb-mcp-server)** - Unofficial MCP server for the Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), providing access to 3D protein structures, experimental data, and structural bioinformatics information.
 - **[Reaper](https://github.com/dschuler36/reaper-mcp-server)** - Interact with your [Reaper](https://www.reaper.fm/) (Digital Audio Workstation) projects.
 - **[Redbee](https://github.com/Tamsi/redbee-mcp)** - Redbee MCP server that provides support for interacting with Redbee API.
 - **[Redis](https://github.com/GongRzhe/REDIS-MCP-Server)** - Redis database operations and caching microservice server with support for key-value operations, expiration management, and pattern-based key listing.
@@ -1143,6 +1152,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[Tyk API Management](https://github.com/TykTechnologies/tyk-dashboard-mcp)** - Chat with all of your organization's managed APIs and perform other API lifecycle operations, managing tokens, users, analytics, and more.
 - **[Typesense](https://github.com/suhail-ak-s/mcp-typesense-server)** - A Model Context Protocol (MCP) server implementation that provides AI models with access to Typesense search capabilities. This server enables LLMs to discover, search, and analyze data stored in Typesense collections.
 - **[UniFi Dream Machine](https://github.com/sabler/mcp-unifi)** An MCP server that gets your network telemetry from the UniFi Site Manager and your local UniFi router.
+- **[UniProt](https://github.com/QuentinCody/uniprot-mcp-server)** - Unofficial MCP server for UniProt, providing access to protein sequence data, functional annotations, taxonomic information, and cross-references for proteomics and bioinformatics research.
 - **[uniswap-poolspy-mcp](https://github.com/kukapay/uniswap-poolspy-mcp)** - An MCP server that tracks newly created liquidity pools on Uniswap across nine blockchain networks.
 - **[uniswap-trader-mcp](https://github.com/kukapay/uniswap-trader-mcp)** -An MCP server for AI agents to automate token swaps on Uniswap DEX across multiple blockchains.
 - **[Unity Catalog](https://github.com/ognis1205/mcp-server-unitycatalog)** - An MCP server that enables LLMs to interact with Unity Catalog AI, supporting CRUD operations on Unity Catalog Functions and executing them as MCP tools.
@@ -1177,6 +1187,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[WhatsApp MCP Server](https://github.com/lharries/whatsapp-mcp)** - MCP server for your personal WhatsApp handling individuals, groups, searching and sending.
 - **[Whois MCP](https://github.com/bharathvaj-ganesan/whois-mcp)** - MCP server that performs whois lookup against domain, IP, ASN and TLD.
 - **[Wikidata MCP](https://github.com/zzaebok/mcp-wikidata)** - Wikidata MCP server that interact with Wikidata, by searching identifiers, extracting metadata, and executing sparql query.
+- **[Wikidata SPARQL](https://github.com/QuentinCody/wikidata-sparql-mcp-server)** - Unofficial REMOTE MCP server for Wikidata's SPARQL endpoint, providing access to structured knowledge data, entity relationships, and semantic queries for research and data analysis.
 - **[Wikipedia MCP](https://github.com/Rudra-ravi/wikipedia-mcp)** - Access and search Wikipedia articles via MCP for AI-powered information retrieval.
 - **[WildFly MCP](https://github.com/wildfly-extras/wildfly-mcp)** - WildFly MCP server that enables LLM to interact with running WildFly servers (retrieve metrics, logs, invoke operations, ...).
 - **[Windows CLI](https://github.com/SimonB97/win-cli-mcp-server)** - MCP server for secure command-line interactions on Windows systems, enabling controlled access to PowerShell, CMD, and Git Bash shells.
@@ -1205,6 +1216,7 @@ A growing set of community-developed and maintained servers demonstrates various
 - **[YouTube Video Summarizer](https://github.com/nabid-pf/youtube-video-summarizer-mcp)** - Summarize lengthy youtube videos.
 - **[yutu](https://github.com/eat-pray-ai/yutu)** - A fully functional MCP server and CLI for YouTube to automate YouTube operation.
 - **[ZapCap](https://github.com/bogdan01m/zapcap-mcp-server)** - MCP server for ZapCap API providing video caption and B-roll generation via natural language
+- **[ZincBind](https://github.com/QuentinCody/zincbind-mcp-server)** - Unofficial MCP server for ZincBind, providing access to a comprehensive database of zinc binding sites in proteins, structural coordination data, and metalloproteomics research information.
 - **[Zoom](https://github.com/Prathamesh0901/zoom-mcp-server/tree/main)** - Create, update, read and delete your zoom meetings.
 ## 📚 Frameworks