From 723b62516aedf1adf2ccf8d9ea939d3f72c88e5f Mon Sep 17 00:00:00 2001
From: YiFuiC <99245728+YiFuiC@users.noreply.github.com>
Date: Mon, 12 Aug 2024 14:51:44 +0100
Subject: [PATCH] Removal of adata preprocessing

---
 generate_simulate_data/processing_data.ipynb | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/generate_simulate_data/processing_data.ipynb b/generate_simulate_data/processing_data.ipynb
index c674bdf..8ed3547 100644
--- a/generate_simulate_data/processing_data.ipynb
+++ b/generate_simulate_data/processing_data.ipynb
@@ -226,8 +226,8 @@
     "    library_id = \"tissue\"\n",
     "    adata.uns[spatial_key] = {library_id: {}}\n",
     "    \n",
-    "    sc.pp.normalize_total(adata)\n",
-    "    sc.pp.log1p(adata)\n",
+    "    #sc.pp.normalize_total(adata)\n",
+    "    #sc.pp.log1p(adata)\n",
     "    \n",
     "    adata.write_h5ad(f'{input_dir}/{dataset}.h5ad')"
    ]