Remove imagej-isms from javadoc

Author: ctrueden

src/main/java/org/scijava/command/CommandService.java

@@ -90,7 +90,7 @@ <CT extends Command> List<CommandInfo> getCommands(
 	 * Gets the list of commands of the given class.
 	 * <p>
 	 * Most classes will have only a single match, but some special classes (such
-	 * as {@code imagej.legacy.LegacyCommand}) may match many entries.
+	 * as ImageJ's {@code LegacyCommand}) may match many entries.
 	 * </p>
 	 */
 	<C extends Command> List<CommandInfo> getCommandsOfClass(
@@ -100,7 +100,7 @@ <C extends Command> List<CommandInfo> getCommandsOfClass(
 	 * Gets the list of commands with the given class name.
 	 * <p>
 	 * Most classes will have only a single match, but some special classes (such
-	 * as {@code imagej.legacy.LegacyCommand}) may match many entries.
+	 * as ImageJ's {@code LegacyCommand}) may match many entries.
 	 * </p>
 	 */
 	List<CommandInfo> getCommandsOfClass(String className);

src/main/java/org/scijava/display/Display.java

@@ -38,9 +38,7 @@
 
 /**
  * A display is a particular type of plugin intended to collect objects for
- * visualization. The most common type of display is the
- * {@code net.imagej.display.ImageDisplay}, which displays images. However, in
- * principle there are no limits to the sorts of objects that can be handled.
+ * visualization. For example, a {@link TextDisplay} displays {@link String}s.
  * <p>
  * Displays discoverable at runtime must implement this interface and be
  * annotated with @{@link Plugin} with attribute {@link Plugin#type()} =
@@ -86,11 +84,11 @@ public interface Display<T> extends List<T>, RichPlugin {
 	 * <p>
 	 * Note that this method may behave differently than {@link #contains}; in
 	 * general, any time {@link #contains} returns true, this method will also
-	 * return true, but not vice versa. For example, an
-	 * {@code imagej.data.display.ImageDisplay} is a {@code Display<DataView>} but
-	 * calling {@code isDisplaying} an a {@code Dataset} (which is not a
-	 * {@code DataView}) will return true if the {@code ImageDisplay} currently
-	 * contains a {@code DatasetView} that wraps that {@code Dataset}.
+	 * return true, but not vice versa. For example, in ImageJ, an
+	 * {@code ImageDisplay} is a {@code Display<DataView>} but calling
+	 * {@code isDisplaying} on a {@code Dataset} (which is not a {@code DataView})
+	 * will return true if the {@code ImageDisplay} currently contains a
+	 * {@code DatasetView} that wraps that {@code Dataset}.
 	 * </p>
 	 */
 	boolean isDisplaying(Object o);

src/main/java/org/scijava/event/EventService.java

@@ -54,14 +54,15 @@ public interface EventService extends SciJavaService {
 	 * of a stack. For example:
 	 * </p>
 	 * <ol>
-	 * <li>@{code imagej.module.event.ModulesUpdatedEvent} is published with
+	 * <li>{@link org.scijava.module.event.ModulesUpdatedEvent} is published with
 	 * {@link #publish}.</li>
-	 * <li>{@code imagej.menu.DefaultMenuService} receives the event and handles
-	 * it, publishing {@code imagej.menu.event.MenusUpdatedEvent} in response.</li>
+	 * <li>{@link org.scijava.menu.DefaultMenuService} receives the event and
+	 * handles it, publishing {@link org.scijava.menu.event.MenusUpdatedEvent} in
+	 * response.</li>
 	 * <li>A third party that subscribes to both
-	 * {@code imagej.module.event.ModulesUpdatedEvent} and
-	 * {@code imagej.menu.event.MenusUpdatedEvent} will receive the latter before
-	 * the former.</li>
+	 * {@link org.scijava.module.event.ModulesUpdatedEvent} and
+	 * {@link org.scijava.menu.event.MenusUpdatedEvent} will receive the latter
+	 * before the former.</li>
 	 * </ol>
 	 * That said, the behavior of {@link #publish} depends on the thread from
 	 * which it is called: if called from a thread identified as a dispatch thread
@@ -84,14 +85,15 @@ public interface EventService extends SciJavaService {
 	 * resemble that of a queue. For example:
 	 * </p>
 	 * <ol>
-	 * <li>{@code imagej.module.event.ModulesUpdatedEvent} is published with
+	 * <li>{@link org.scijava.module.event.ModulesUpdatedEvent} is published with
 	 * {@link #publishLater}.</li>
-	 * <li>{@code imagej.menu.DefaultMenuService} receives the event and handles
-	 * it, publishing {@code imagej.menu.event.MenusUpdatedEvent} in response.</li>
+	 * <li>{@link org.scijava.menu.DefaultMenuService} receives the event and
+	 * handles it, publishing {@link org.scijava.menu.event.MenusUpdatedEvent} in
+	 * response.</li>
 	 * <li>A third party that subscribes to both
-	 * {@code imagej.module.event.ModulesUpdatedEvent} and
-	 * {@code imagej.menu.event.MenusUpdatedEvent} will receive the former first,
-	 * since it was already queued by the time the latter was published.</li>
+	 * {@link org.scijava.module.event.ModulesUpdatedEvent} and
+	 * {@link org.scijava.menu.event.MenusUpdatedEvent} will receive the former
+	 * first, since it was already queued by the time the latter was published.</li>
 	 * </ol>
 	 */
 	<E extends SciJavaEvent> void publishLater(E e);

src/main/java/org/scijava/object/DefaultObjectService.java

@@ -50,9 +50,11 @@
  * registers new objects from {@link ObjectCreatedEvent}s, and removes objects
  * from {@link ObjectDeletedEvent}s.
  * <p>
- * This is useful to retrieve available objects of a particular type, such as
- * the list of {@code imagej.data.Dataset}s upon which a user can choose to
- * operate.
+ * This is useful to retrieve available objects of a particular type. For
+ * example, the {@link org.scijava.widget.InputHarvester} infrastructure uses it
+ * to provide a pool of available objects for widgets such as the
+ * {@link org.scijava.widget.ObjectWidget}, which provide the user with a
+ * multiple-choice selection.
  * </p>
  * 
  * @author Curtis Rueden

src/main/java/org/scijava/plugin/PTService.java

@@ -43,12 +43,12 @@
  * few examples from ImageJ:
  * </p>
  * <ul>
- * <li>The {@code imagej.command.CommandService} works with
- * {@code imagej.command.Command}s.</li>
- * <li>The {@code imagej.text.TextService} works with
- * {@code imagej.text.TextFormat}s.</li>
- * <li>The {@code imagej.platform.PlatformService} works with
- * {@code imagej.platform.Platform}s.</li>
+ * <li>The {@link org.scijava.command.CommandService} works with
+ * {@link org.scijava.command.Command}s.</li>
+ * <li>The {@link org.scijava.text.TextService} works with
+ * {@link org.scijava.text.TextFormat}s.</li>
+ * <li>The {@link org.scijava.platform.PlatformService} works with
+ * {@link org.scijava.platform.Platform}s.</li>
  * </ul>
  * <p>
  * Most services fit this pattern in one way or another. When you wish to
@@ -58,12 +58,13 @@
  * </p>
  * <ul>
  * <li>A {@link SingletonService}, such as
- * {@code imagej.platform.PlatformService}, which manages
+ * {@link org.scijava.platform.PlatformService}, which manages
  * {@link SingletonPlugin}s.</li>
- * <li>A {@link HandlerService}, such as {@code imagej.text.TextService}, which
- * manages {@link HandlerPlugin}s.</li>
- * <li>A {@link WrapperService}, such as {@code imagej.widget.WidgetService},
- * which manages {@link WrapperPlugin}s.</li>
+ * <li>A {@link HandlerService}, such as {@link org.scijava.text.TextService},
+ * which manages {@link HandlerPlugin}s.</li>
+ * <li>A {@link WrapperService}, such as
+ * {@link org.scijava.widget.WidgetService}, which manages
+ * {@link WrapperPlugin}s.</li>
  * </ul>
  * <p>
  * It is named {@code PTService} rather than {@code PluginTypeService} or

src/main/java/org/scijava/plugin/PluginService.java

@@ -114,7 +114,7 @@ public interface PluginService extends SciJavaService {
 	 * Gets the list of plugins of the given class.
 	 * <p>
 	 * Most classes will have only a single match, but some special classes (such
-	 * as {@code imagej.legacy.LegacyCommand}) may match many entries.
+	 * as ImageJ's {@code LegacyCommand}) may match many entries.
 	 * </p>
 	 * <p>
 	 * Note that this method will result in {@link PluginInfo}s with matching
@@ -133,7 +133,7 @@ public interface PluginService extends SciJavaService {
 	 * Gets the list of plugins of the given class.
 	 * <p>
 	 * Most classes will have only a single match, but some special classes (such
-	 * as {@code imagej.legacy.LegacyCommand}) may match many entries.
+	 * as ImageJ's {@code LegacyCommand}) may match many entries.
 	 * </p>
 	 * <p>
 	 * Note that this method will result in {@link PluginInfo}s with matching
@@ -156,7 +156,7 @@ public interface PluginService extends SciJavaService {
 	 * Gets the list of plugins with the given class name.
 	 * <p>
 	 * Most classes will have only a single match, but some special classes (such
-	 * as {@code imagej.legacy.LegacyCommand}) may match many entries.
+	 * as ImageJ's {@code LegacyCommand}) may match many entries.
 	 * </p>
 	 * 
 	 * @param className The class name for which to obtain the list of matching
@@ -168,7 +168,7 @@ public interface PluginService extends SciJavaService {
 	 * Gets the list of plugins with the given class name.
 	 * <p>
 	 * Most classes will have only a single match, but some special classes (such
-	 * as {@code imagej.legacy.LegacyCommand}) may match many entries.
+	 * as ImageJ's {@code LegacyCommand}) may match many entries.
 	 * </p>
 	 * 
 	 * @param <PT> The <em>type</em> of plugins to look up; e.g.,

src/main/java/org/scijava/plugin/WrapperPlugin.java

@@ -35,7 +35,7 @@
  * A plugin with a special "has-a" relationship (i.e., composition rather than
  * inheritance) with a single data object of a particular type.
  * <p>
- * For a concrete example, see ImageJ's {@code imagej.view.View}.
+ * For a concrete example, see {@code org.scijava.widget.InputWidget}.
  * </p>
  * 
  * @author Curtis Rueden