fix

Author: xadupre

_doc/conf.py

@@ -19,10 +19,12 @@
     "sphinx_gallery.gen_gallery",
     "sphinx_issues",
     "sphinx_runpython.blocdefs.sphinx_exref_extension",
+    "sphinx_runpython.blocdefs.sphinx_faqref_extension",
     "sphinx_runpython.blocdefs.sphinx_mathdef_extension",
     "sphinx_runpython.epkg",
     "sphinx_runpython.gdot",
     "sphinx_runpython.runpython",
+    "sphinxcontrib.blockdiag",
     "matplotlib.sphinxext.plot_directive",
 ]
 
@@ -40,7 +42,7 @@
 source_suffix = ".rst"
 master_doc = "index"
 project = "mlstatpy"
-copyright = "2016-2024, Xavier Dupré"
+copyright = "2016-2025, Xavier Dupré"
 author = "Xavier Dupré"
 version = __version__
 release = __version__
@@ -50,14 +52,26 @@
 todo_include_todos = True
 nbsphinx_execute = "never"
 
-html_theme = "pydata_sphinx_theme"
+html_theme = "furo"
 html_theme_path = ["_static"]
 html_theme_options = {}
 html_sourcelink_suffix = ""
 html_static_path = ["_static"]
 
 issues_github_path = "sdpython/mlstatpy"
 
+nbsphinx_prolog = """
+
+.. _nbl-{{ env.doc2path(env.docname, base=None).replace("/", "-").split(".")[0] }}:
+
+"""
+
+nbsphinx_epilog = """
+----
+
+`Notebook on github <https://github.com/sdpython/teachpyx/tree/main/_doc/{{ env.doc2path(env.docname, base=None) }}>`_
+"""
+
 # The following is used by sphinx.ext.linkcode to provide links to github
 linkcode_resolve = make_linkcode_resolve(
     "mlstatpy",

_doc/sg_execution_times.rst

@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:00.945** total execution time for 1 file **from all galleries**:
+**00:01.457** total execution time for 1 file **from all galleries**:
 
 .. container::
 
@@ -33,5 +33,5 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_plot_logistic_decision.py` (``examples/plot_logistic_decision.py``)
-     - 00:00.945
+     - 00:01.457
      - 0.0

mlstatpy/ext_test_case.py

@@ -139,7 +139,7 @@ def _local_loop(ur):
         raise e
 
     if chunk is None:
-        if len(res) >= 2 and res[:2] == b"\x1f\x8B":
+        if len(res) >= 2 and res[:2] == b"\x1f\x8b":
             # gzip format
             res = gzip.decompress(res)
 
@@ -753,7 +753,7 @@ def ungzip_files(
         is_file = True
 
     if encoding is None:
-        f = gzip.open(filename, "rb")
+        f = gzip.open(filename, "rb")  # noqa: SIM115
         content = f.read()
         f.close()
         if unzip:
@@ -769,7 +769,7 @@ def ungzip_files(
             return filename
         return content
     else:
-        f = gzip.open(filename, "rt", encoding="utf-8")
+        f = gzip.open(filename, "rt", encoding="utf-8")  # noqa: SIM115
         content = f.read()
         f.close()
         if is_file:

mlstatpy/graph/graph_distance.py

@@ -3,7 +3,7 @@
 
 
 class _Vertex:
-    __slots__ = ("nb", "label", "weight")
+    __slots__ = ("nb", "label", "weight")  # noqa: RUF023
 
     def __init__(self, nb, label, weight):
         self.nb = nb  # kind of id
@@ -62,7 +62,7 @@ def Label(self):
 
 
 class _Edge:
-    __slots__ = ("from_", "to", "label", "weight", "nb")
+    __slots__ = ("from_", "to", "label", "weight", "nb")  # noqa: RUF023
 
     def __init__(self, from_, to, label, weight):
         self.from_, self.to = from_, to

mlstatpy/image/detection_segment/detection_nfa.py

@@ -34,7 +34,7 @@ class InformationPoint:
     proche du vecteur normal au segment (aligne)"""
 
     # voir la classe Point pour __slots__
-    __slots__ = "pos", "aligne", "norme"
+    __slots__ = ("pos", "aligne", "norme")  # noqa: RUF023
 
     def __init__(self, pos, aligne, norme):
         """constructeur, initialisation"""

mlstatpy/image/detection_segment/detection_segment_segangle.py

@@ -28,7 +28,7 @@ class SegmentBord(SegmentBord_Commun):
     """
 
     # voir la remarque de la classe Point a propos de __slots__
-    __slots__ = "angle", "fin", "vecteur", "bord1", "dangle"
+    __slots__ = ("angle", "fin", "vecteur", "bord1", "dangle")  # noqa: RUF023
 
     def __init__(self, dim, dangle=math.pi / 24.0):
         """initialise les dimensions et

mlstatpy/nlp/completion.py

@@ -10,7 +10,15 @@ class CompletionTrieNode:
     It should be done another way (:epkg:`cython`, :epkg:`C++`).
     """
 
-    __slots__ = ("value", "children", "weight", "leave", "stat", "parent", "disp")
+    __slots__ = (  # noqa: RUF023
+        "value",
+        "children",
+        "weight",
+        "leave",
+        "stat",
+        "parent",
+        "disp",
+    )
 
     def __init__(self, value, leave, weight=1.0, disp=None):
         """

mlstatpy/nlp/completion_simple.py

@@ -26,7 +26,7 @@ class CompletionElement:
     :param disp: original string, use this to identify the node
     """
 
-    __slots__ = (
+    __slots__ = (  # noqa: RUF023
         "value",
         "weight",
         "disp",

pyproject.toml

@@ -86,6 +86,7 @@ select = [
 ]
 "_unittests/**" = ["SIM113", "RUF005", "E402"]
 "**/plot*.py" = ["B018"]
+"_doc/conf.py" = ["E501"]
 "_doc/sphinxdoc/source/conf.py" = ["F821"]
 "_doc/notebooks/dsgarden/**" = ["B007", "E402"]
 "_doc/notebooks/metric/**" = ["C400", "RUF005", "B007", "C417"]