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update copyright year
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‎INFO‎

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Name: lambda
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Author: Hannes Hauswedell <hannes.hauswedell@fu-berlin.de>
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Maintainer: Hannes Hauswedell <hannes.hauswedell@fu-berlin.de>
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License: GPL v3
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Copyright: 2013-2017, Hannes Hauswedell; 2016-2017 Knut Reinert, FU-Berlin
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License: AGPL v3
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Copyright: 2013-2019, Hannes Hauswedell; 2016-2019 Knut Reinert, FU-Berlin
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Status: under development
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Description: Lambda is a biological sequence aligner optimized for many
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query sequences and searches in protein space. It is highly compatible

‎LICENSE-BSD.rst‎

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BSD-License (3-clause)
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======================
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| Copyright (c) 2016-2017, Knut Reinert, Freie Universität Berlin
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| Copyright (c) 2016-2019, Knut Reinert, Freie Universität Berlin
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| All rights reserved.
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Redistribution and use in source and binary forms, with or without
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CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
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OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
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DAMAGE.
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DAMAGE.

‎LICENSE.rst‎

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================
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::
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Copyright (c) 2013-2017, Hannes Hauswedell
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Copyright (c) 2013-2019, Hannes Hauswedell
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All rights reserved.
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Lambda is *free software*: you can redistribute it and/or modify
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Some of the contributions to Lambda are alternatively or additionally
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::
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Copyright (c) 2016-2017, Knut Reinert and Freie Universität Berlin
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Copyright (c) 2016-2019, Knut Reinert and Freie Universität Berlin
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These are covered by the three clause BSD license as can be found in
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the file `LICENSE-BSD.rst <./LICENSE-BSD.rst>`__. In cases of doubt
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---------------
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::
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Copyright (c) 2006-2017, Knut Reinert and Freie Universität Berlin
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Copyright (c) 2006-2019, Knut Reinert and Freie Universität Berlin
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SeqAn is published under the terms of the three clause BSD license as can
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be found in the file `include/seqan/LICENSE <./include/seqan/LICENSE>`__

‎src/lambda.cpp‎

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// ==========================================================================
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// lambda
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// ==========================================================================
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// Copyright (c) 2013-2017, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2017, Knut Reinert and Freie Universität Berlin
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// Copyright (c) 2013-2019, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2019, Knut Reinert and Freie Universität Berlin
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// All rights reserved.
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//
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// This file is part of Lambda.

‎src/mkindex.hpp‎

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// ==========================================================================
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// lambda
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// ==========================================================================
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// Copyright (c) 2013-2017, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2017, Knut Reinert and Freie Universität Berlin
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// Copyright (c) 2013-2019, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2019, Knut Reinert and Freie Universität Berlin
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// All rights reserved.
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//
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// This file is part of Lambda.
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if ((options.alphReduction != 0) || (options.dbIndexType != DbIndexType::SUFFIX_ARRAY))
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dumpTranslatedSeqs(translatedSeqs, options);
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// see if final sequence set actually fits into index
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// see if final sequence set actually fits into index
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checkIndexSize(translatedSeqs, options, BlastProgramSelector<p>());
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if (options.dbIndexType == DbIndexType::FM_INDEX)

‎src/mkindex_algo.hpp‎

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// ==========================================================================
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// lambda
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// ==========================================================================
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// Copyright (c) 2013-2017, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2017, Knut Reinert and Freie Universität Berlin
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// Copyright (c) 2013-2019, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2019, Knut Reinert and Freie Universität Berlin
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// All rights reserved.
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//
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// This file is part of Lambda.
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// out.concat = in.concat;
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// out.limits = in.limits;
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// }
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//
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//
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// template <typename TSameAlph>
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// inline void
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// reduceOrSwap(TCDStringSet<String<TSameAlph>> & out,

‎src/mkindex_misc.hpp‎

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// ==========================================================================
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// lambda
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// ==========================================================================
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// Copyright (c) 2013-2017, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2017, Knut Reinert and Freie Universität Berlin
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// Copyright (c) 2013-2019, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2019, Knut Reinert and Freie Universität Berlin
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// All rights reserved.
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//
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// This file is part of Lambda.

‎src/mkindex_options.hpp‎

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// ==========================================================================
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// lambda
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// ==========================================================================
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// Copyright (c) 2013-2017, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2017, Knut Reinert and Freie Universität Berlin
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// Copyright (c) 2013-2019, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2019, Knut Reinert and Freie Universität Berlin
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// All rights reserved.
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//
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// This file is part of Lambda.

‎src/search.hpp‎

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// ==========================================================================
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// lambda
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// ==========================================================================
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// Copyright (c) 2013-2017, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2017, Knut Reinert and Freie Universität Berlin
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// Copyright (c) 2013-2019, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2019, Knut Reinert and Freie Universität Berlin
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// All rights reserved.
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//
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// This file is part of Lambda.

‎src/search_algo.hpp‎

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// ==========================================================================
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// lambda
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// ==========================================================================
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// Copyright (c) 2013-2017, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2017, Knut Reinert and Freie Universität Berlin
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// Copyright (c) 2013-2019, Hannes Hauswedell <h2 @ fsfe.org>
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// Copyright (c) 2016-2019, Knut Reinert and Freie Universität Berlin
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// All rights reserved.
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//
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// This file is part of Lambda.

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