use cli for print tidySE and fix GHA

Author: mikelove

.github/workflows/check-bioc.yml

@@ -52,9 +52,9 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - { os: ubuntu-latest, r: '4.3', bioc: '3.18', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" }
-          - { os: macOS-latest, r: '4.3', bioc: '3.18'}
-          - { os: windows-latest, r: '4.3', bioc: '3.18'}
+          - { os: ubuntu-latest, r: '4.4', bioc: '3.19', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" }
+          - { os: macOS-latest, r: '4.4', bioc: '3.19'}
+          - { os: windows-latest, r: '4.4', bioc: '3.19'}
           ## Check https://github.com/r-lib/actions/tree/master/examples
           ## for examples using the http-user-agent
     env:
@@ -105,16 +105,16 @@ jobs:
         uses: actions/cache@v3
         with:
           path: ${{ env.R_LIBS_USER }}
-          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.3-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.3-
+          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.4-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.4-
 
       - name: Cache R packages on Linux
         if: "!contains(github.event.head_commit.message, '/nocache') && runner.os == 'Linux' "
         uses: actions/cache@v3
         with:
           path: /home/runner/work/_temp/Library
-          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.3-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.3-
+          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.4-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.4-
 
       # - name: Install Linux system dependencies
       #   if: runner.os == 'Linux'
@@ -285,7 +285,7 @@ jobs:
         if: failure()
         uses: actions/upload-artifact@master
         with:
-          name: ${{ runner.os }}-biocversion-devel-r-4.3-results
+          name: ${{ runner.os }}-biocversion-devel-r-4.4-results
           path: check
 
 

R/print_method.R

@@ -13,6 +13,7 @@
 #' @importFrom pillar get_extent
 #' @importFrom pillar style_subtle
 #' @importFrom pillar tbl_format_header
+#' @importFrom cli col_br_black
 #' @export
 tbl_format_header.tidySummarizedExperiment <- function(x, setup, ...) {
 
@@ -32,12 +33,12 @@ tbl_format_header.tidySummarizedExperiment <- function(x, setup, ...) {
                 named_header
             ) %>%
             # Add further info single-cell
-            append(sprintf(
-                "\033[90m Features=%s | Samples=%s | Assays=%s\033[39m",
+            append( cli::col_br_black( sprintf(
+                " Features=%s | Samples=%s | Assays=%s",
                 number_of_features,
                 number_of_samples,
                 assay_names %>% paste(collapse=", ")
-            ), after = 1)
+            )), after = 1)
     }
     style_subtle(pillar___format_comment(header, width=setup$width))
 }