python-3.13 fails to build on amd64 #75981
Description
The package python-3.13 with version 3.13.11 and epoch 2 fails to build from source on amd64 with the following error:
2025-12-15 06:38:47.508232353 +0000 UTC parsed env
2025-12-15 06:38:47.508281065 +0000 UTC configuring puller identity "720909c9f5279097d847ad02a2f24ba8f59de36a/a49c7fedc33adf69"...
2025-12-15 06:38:47.508519306 +0000 UTC running command chainctl [auth login --audience apk.cgr.dev --identity 720909c9f5279097d847ad02a2f24ba8f59de36a/a49c7fedc33adf69]
2025-12-15 06:38:47.763579865 +0000 UTC Successfully exchanged token.
2025-12-15 06:38:47.832775653 +0000 UTC Valid! Id: 720909c9f5279097d847ad02a2f24ba8f59de36a/a49c7fedc33adf69
2025-12-15 06:38:47.875428045 +0000 UTC Updates are available for chainctl (current version: 0.2.183; latest: 0.2.184). To install, please run:
2025-12-15 06:38:47.87543034 +0000 UTC $ chainctl update
2025-12-15 06:38:47.87738308 +0000 UTC command "chainctl" completed successfully
2025-12-15 06:38:47.877432221 +0000 UTC puller identity configured successfully
2025-12-15 06:38:47.877458753 +0000 UTC puller identity configured successfully
2025-12-15 06:38:47.877478758 +0000 UTC running build...
2025-12-15 06:38:47.87749305 +0000 UTC running command melange [build python-3.13.yaml --gcplog --source-dir python-3.13 --arch x86_64 --arch=x86_64 --env-file=build-x86_64.env --namespace=wolfi --pipeline-dir=./pipelines --out-dir=./packages/ --runner=qemu --repository-append=https://apk.cgr.dev/chainguard --repository-append=https://apk.cgr.dev/wolfi-presubmit/world-1765780354307 --repository-append=https://apk.cgr.dev/wolfi-presubmit/world-1765780354307 --git-repo-url=https://github.com/wolfi-dev/os]
2025-12-15 06:38:47.889819586 +0000 UTC melange version with runner qemu building [python-3.13.yaml] at commit for arches [amd64]
2025-12-15 06:38:47.894408336 +0000 UTC melange v0.36.0 with runner qemu is building:
2025-12-15 06:38:47.91443518 +0000 UTC populating workspace /tmp/melange-workspace-2380865033 from python-3.13
2025-12-15 06:38:49.083862543 +0000 UTC image configuration:
2025-12-15 06:38:49.083956686 +0000 UTC contents:
2025-12-15 06:38:49.083965523 +0000 UTC build repositories: [https://apk.cgr.dev/chainguard https://apk.cgr.dev/wolfi-presubmit/world-1765780354307]
2025-12-15 06:38:49.083975064 +0000 UTC runtime repositories: []
2025-12-15 06:38:49.083979731 +0000 UTC repositories: []
2025-12-15 06:38:49.083984003 +0000 UTC keyring: []
2025-12-15 06:38:49.083988633 +0000 UTC packages: [autoconf=2.72-r5 automake=1.18.1-r2 binutils=2.45.1-r2 build-base=1-r9 busybox=1.37.0-r50 bzip2-dev=1.0.8-r21 ca-certificates-bundle=20251003-r0 cyrus-sasl=2.1.28-r45 expat-dev=2.7.3-r0 fontconfig-config=2.17.1-r1 freetype=2.14.1-r0 gcc=15.2.0-r6 gdbm-dev=1.26-r1 gdbm=1.26-r1 git=2.52.0-r0 glibc-dev=2.42-r4 glibc-locale-posix=2.42-r4 glibc=2.42-r4 gmp=6.3.0-r8 heimdal-libs=7.8.0-r42 isl=0.27-r4 jitterentropy-library-dev=3.6.3-r2 jitterentropy-library=3.6.3-r2 keyutils-libs=1.6.3-r37 krb5-conf=1.0-r7 krb5-libs=1.22.1-r1 ld-linux=2.42-r4 libatomic=15.2.0-r6 libblkid=2.41.2-r2 libbrotlicommon1=1.2.0-r1 libbrotlidec1=1.2.0-r1 libbz2-1=1.0.8-r21 libcap-utils=2.77-r0 libcap=2.77-r0 libcom_err=1.47.3-r1 libcrypt1=2.42-r4 libcrypto3=3.6.0-r6 libcurl-openssl4=8.17.0-r0 libedit-dev=3.1-r13 libedit=3.1-r13 libexpat1=2.7.3-r0 libfdisk=2.41.2-r2 libffi-dev=3.5.2-r1 libffi=3.5.2-r1 libfontconfig1=2.17.1-r1 libgcc=15.2.0-r6 libgomp=15.2.0-r6 libice-dev=1.1.2-r2 libice=1.1.2-r2 libidn2=2.3.8-r3 libldap-2.6=2.6.10-r7 libmount=2.41.2-r2 libnghttp2-14=1.68.0-r0 libpcre2-16-0=10.47-r0 libpcre2-32-0=10.47-r0 libpcre2-8-0=10.47-r0 libpcre2-posix-3=10.47-r0 libpng=1.6.53-r0 libpsl=0.21.5-r6 libquadmath=15.2.0-r6 libselinux-dev=3.9-r1 libselinux=3.9-r1 libsepol-dev=3.9-r1 libsepol=3.9-r1 libsm-dev=1.2.6-r1 libsm=1.2.6-r1 libsmartcols=2.41.2-r2 libssl3=3.6.0-r6 libstdc++-dev=15.2.0-r6 libstdc++=15.2.0-r6 libunistring=1.4.1-r1 libuuid=2.41.2-r2 libverto=0.3.2-r6 libx11-dev=1.8.12-r3 libx11=1.8.12-r3 libxau-dev=1.0.12-r3 libxau=1.0.12-r3 libxcb-dev=1.17.0-r8 libxcb=1.17.0-r8 libxcrypt-dev=4.5.2-r0 libxcrypt=4.5.2-r0 libxdmcp-dev=1.1.5-r9 libxdmcp=1.1.5-r9 libxft=2.3.9-r1 libxrender=0.9.12-r4 libxt-dev=1.3.1-r2 libxt=1.3.1-r2 libzstd1=1.5.7-r5 linux-headers=6.18.1-r0 m4=1.4.20-r5 make=4.4.1-r8 mpc=1.3.1-r7 mpdecimal-dev=4.0.1-r3 mpdecimal=4.0.1-r3 mpfr=4.2.2-r2 ncurses-dev=6.5_p20251025-r1 ncurses-terminfo-base=6.5_p20251025-r1 ncurses=6.5_p20251025-r1 nghttp3=1.13.1-r0 nss-db=2.42-r4 nss-hesiod=2.42-r4 openssf-compiler-options=20250904-r2 openssl-dev=3.6.0-r6 patch=2.8-r3 pcre2-dev=10.47-r0 perl=5.42.0-r1 pkgconf=2.5.1-r1 posix-cc-wrappers=2-r7 readline-dev=8.3-r1 readline=8.3-r1 scanelf=1.3.10-r0 sqlite-dev=3.51.1-r0 sqlite-libs=3.51.1-r0 sqlite=3.51.1-r0 tcl-dev=9.0.3-r0 tcl=9.0.3-r0 tk-dev=9.0.3-r0 tk=9.0.3-r0 tzdata=2025c-r0 util-linux-dev=2.41.2-r2 util-linux=2.41.2-r2 wolfi-baselayout=20230201-r24 xcb-proto=1.17.0-r4 xorgproto=2024.1-r3 xtrans=1.6.0-r0 xz-dev=5.8.1-r6 xz=5.8.1-r6 zlib-dev=1.3.1-r51 zlib=1.3.1-r51]
2025-12-15 06:38:49.084027739 +0000 UTC accounts:
2025-12-15 06:38:49.084033981 +0000 UTC runas:
2025-12-15 06:38:49.084039926 +0000 UTC users:
2025-12-15 06:38:49.084046007 +0000 UTC - uid=1000(build) gid=1000
2025-12-15 06:38:49.084052784 +0000 UTC groups:
2025-12-15 06:38:49.084059709 +0000 UTC - gid=1000(build) members=[build]
2025-12-15 06:38:49.084067016 +0000 UTC auth configured for: 0x1042020
2025-12-15 06:38:49.383290424 +0000 UTC installing wolfi-baselayout (20230201-r24)
2025-12-15 06:38:49.392174617 +0000 UTC installing ca-certificates-bundle (20251003-r0)
2025-12-15 06:38:49.410765408 +0000 UTC installing glibc-locale-posix (2.42-r4)
2025-12-15 06:38:49.419171361 +0000 UTC installing libgcc (15.2.0-r6)
2025-12-15 06:38:49.831798701 +0000 UTC installing glibc (2.42-r4)
2025-12-15 06:38:49.832653431 +0000 UTC installing ld-linux (2.42-r4)
2025-12-15 06:38:49.833438707 +0000 UTC installing libbz2-1 (1.0.8-r21)
2025-12-15 06:38:49.83404378 +0000 UTC installing libxcrypt (4.5.2-r0)
2025-12-15 06:38:49.834680316 +0000 UTC installing libcrypt1 (2.42-r4)
2025-12-15 06:38:49.835379464 +0000 UTC installing zlib (1.3.1-r51)
2025-12-15 06:38:49.888265124 +0000 UTC installing perl (5.42.0-r1)
2025-12-15 06:38:49.892901535 +0000 UTC installing m4 (1.4.20-r5)
2025-12-15 06:38:49.893469526 +0000 UTC installing autoconf (2.72-r5)
2025-12-15 06:38:49.894069543 +0000 UTC installing automake (1.18.1-r2)
2025-12-15 06:38:49.89473548 +0000 UTC installing libstdc++ (15.2.0-r6)
2025-12-15 06:38:49.895295427 +0000 UTC installing libzstd1 (1.5.7-r5)
2025-12-15 06:38:50.20125909 +0000 UTC installing binutils (2.45.1-r2)
2025-12-15 06:38:50.2019514 +0000 UTC installing libxcrypt-dev (4.5.2-r0)
2025-12-15 06:38:50.202336167 +0000 UTC installing linux-headers (6.18.1-r0)
2025-12-15 06:38:50.205009613 +0000 UTC installing nss-db (2.42-r4)
2025-12-15 06:38:50.205772257 +0000 UTC installing nss-hesiod (2.42-r4)
2025-12-15 06:38:50.206457923 +0000 UTC installing glibc-dev (2.42-r4)
2025-12-15 06:38:50.207678032 +0000 UTC installing libquadmath (15.2.0-r6)
2025-12-15 06:38:50.208311123 +0000 UTC installing libstdc++-dev (15.2.0-r6)
2025-12-15 06:38:50.210471499 +0000 UTC installing posix-cc-wrappers (2-r7)
2025-12-15 06:38:50.210699719 +0000 UTC installing libatomic (15.2.0-r6)
2025-12-15 06:38:50.211238529 +0000 UTC installing gmp (6.3.0-r8)
2025-12-15 06:38:50.21153595 +0000 UTC installing libgomp (15.2.0-r6)
2025-12-15 06:38:50.212048625 +0000 UTC installing isl (0.27-r4)
2025-12-15 06:38:50.212456862 +0000 UTC installing mpfr (4.2.2-r2)
2025-12-15 06:38:50.212822136 +0000 UTC installing mpc (1.3.1-r7)
2025-12-15 06:38:50.213205871 +0000 UTC installing openssf-compiler-options (20250904-r2)
2025-12-15 06:38:52.607660107 +0000 UTC installing gcc (15.2.0-r6)
2025-12-15 06:38:52.60970204 +0000 UTC installing make (4.4.1-r8)
2025-12-15 06:38:52.610173143 +0000 UTC installing pkgconf (2.5.1-r1)
2025-12-15 06:38:52.610555245 +0000 UTC installing build-base (1-r9)
2025-12-15 06:38:52.610721488 +0000 UTC installing busybox (1.37.0-r50)
2025-12-15 06:38:52.611101029 +0000 UTC installing bzip2-dev (1.0.8-r21)
2025-12-15 06:38:52.611462798 +0000 UTC installing libcrypto3 (3.6.0-r6)
2025-12-15 06:38:52.611879744 +0000 UTC installing gdbm (1.26-r1)
2025-12-15 06:38:52.612303029 +0000 UTC installing ncurses-terminfo-base (6.5_p20251025-r1)
2025-12-15 06:38:52.612996646 +0000 UTC installing ncurses (6.5_p20251025-r1)
2025-12-15 06:38:52.613356596 +0000 UTC installing readline (8.3-r1)
2025-12-15 06:38:52.613621504 +0000 UTC installing sqlite-libs (3.51.1-r0)
2025-12-15 06:38:52.61395909 +0000 UTC installing heimdal-libs (7.8.0-r42)
2025-12-15 06:38:52.614393236 +0000 UTC installing cyrus-sasl (2.1.28-r45)
2025-12-15 06:38:52.614840581 +0000 UTC installing libexpat1 (2.7.3-r0)
2025-12-15 06:38:52.615168462 +0000 UTC installing expat-dev (2.7.3-r0)
2025-12-15 06:38:52.615516847 +0000 UTC installing fontconfig-config (2.17.1-r1)
2025-12-15 06:38:52.615988335 +0000 UTC installing libbrotlicommon1 (1.2.0-r1)
2025-12-15 06:38:52.616498296 +0000 UTC installing libbrotlidec1 (1.2.0-r1)
2025-12-15 06:38:52.616824409 +0000 UTC installing libpng (1.6.53-r0)
2025-12-15 06:38:52.617181951 +0000 UTC installing freetype (2.14.1-r0)
2025-12-15 06:38:52.617444675 +0000 UTC installing gdbm-dev (1.26-r1)
2025-12-15 06:38:52.617695962 +0000 UTC installing krb5-conf (1.0-r7)
2025-12-15 06:38:52.617822319 +0000 UTC installing libcom_err (1.47.3-r1)
2025-12-15 06:38:52.618259542 +0000 UTC installing keyutils-libs (1.6.3-r37)
2025-12-15 06:38:52.618606393 +0000 UTC installing libssl3 (3.6.0-r6)
2025-12-15 06:38:52.619006562 +0000 UTC installing libverto (0.3.2-r6)
2025-12-15 06:38:52.619408518 +0000 UTC installing krb5-libs (1.22.1-r1)
2025-12-15 06:38:52.619863534 +0000 UTC installing libldap-2.6 (2.6.10-r7)
2025-12-15 06:38:52.620339986 +0000 UTC installing libnghttp2-14 (1.68.0-r0)
2025-12-15 06:38:52.620659136 +0000 UTC installing nghttp3 (1.13.1-r0)
2025-12-15 06:38:52.620947819 +0000 UTC installing libunistring (1.4.1-r1)
2025-12-15 06:38:52.621215368 +0000 UTC installing libidn2 (2.3.8-r3)
2025-12-15 06:38:52.621492142 +0000 UTC installing libpsl (0.21.5-r6)
2025-12-15 06:38:52.621808425 +0000 UTC installing libcurl-openssl4 (8.17.0-r0)
2025-12-15 06:38:52.62233568 +0000 UTC installing libpcre2-8-0 (10.47-r0)
2025-12-15 06:38:52.622711788 +0000 UTC installing git (2.52.0-r0)
2025-12-15 06:38:52.623542286 +0000 UTC installing jitterentropy-library (3.6.3-r2)
2025-12-15 06:38:52.623823557 +0000 UTC installing jitterentropy-library-dev (3.6.3-r2)
2025-12-15 06:38:52.624159211 +0000 UTC installing libblkid (2.41.2-r2)
2025-12-15 06:38:52.624524997 +0000 UTC installing libcap (2.77-r0)
2025-12-15 06:38:52.624862203 +0000 UTC installing libcap-utils (2.77-r0)
2025-12-15 06:38:52.625216974 +0000 UTC installing libedit (3.1-r13)
2025-12-15 06:38:52.625486448 +0000 UTC installing ncurses-dev (6.5_p20251025-r1)
2025-12-15 06:38:52.625796807 +0000 UTC installing libedit-dev (3.1-r13)
2025-12-15 06:38:52.626102223 +0000 UTC installing libuuid (2.41.2-r2)
2025-12-15 06:38:52.626464149 +0000 UTC installing libfdisk (2.41.2-r2)
2025-12-15 06:38:52.626778252 +0000 UTC installing libffi (3.5.2-r1)
2025-12-15 06:38:52.627154781 +0000 UTC installing libffi-dev (3.5.2-r1)
2025-12-15 06:38:52.627506456 +0000 UTC installing libfontconfig1 (2.17.1-r1)
2025-12-15 06:38:52.62779753 +0000 UTC installing libice (1.1.2-r2)
2025-12-15 06:38:52.628159465 +0000 UTC installing libxau (1.0.12-r3)
2025-12-15 06:38:52.628486484 +0000 UTC installing libxau-dev (1.0.12-r3)
2025-12-15 06:38:52.628787519 +0000 UTC installing libsm (1.2.6-r1)
2025-12-15 06:38:52.629098019 +0000 UTC installing libpcre2-16-0 (10.47-r0)
2025-12-15 06:38:52.629484326 +0000 UTC installing libpcre2-32-0 (10.47-r0)
2025-12-15 06:38:52.629808852 +0000 UTC installing libpcre2-posix-3 (10.47-r0)
2025-12-15 06:38:52.630174166 +0000 UTC installing zlib-dev (1.3.1-r51)
2025-12-15 06:38:52.630534409 +0000 UTC installing pcre2-dev (10.47-r0)
2025-12-15 06:38:52.630902178 +0000 UTC installing libsepol (3.9-r1)
2025-12-15 06:38:52.631244828 +0000 UTC installing libsepol-dev (3.9-r1)
2025-12-15 06:38:52.63163652 +0000 UTC installing libselinux (3.9-r1)
2025-12-15 06:38:52.63239802 +0000 UTC installing libselinux-dev (3.9-r1)
2025-12-15 06:38:52.632746288 +0000 UTC installing sqlite (3.51.1-r0)
2025-12-15 06:38:52.633024627 +0000 UTC installing sqlite-dev (3.51.1-r0)
2025-12-15 06:38:52.633377305 +0000 UTC installing util-linux (2.41.2-r2)
2025-12-15 06:38:52.633907111 +0000 UTC installing libmount (2.41.2-r2)
2025-12-15 06:38:52.63430639 +0000 UTC installing libsmartcols (2.41.2-r2)
2025-12-15 06:38:52.634655943 +0000 UTC installing util-linux-dev (2.41.2-r2)
2025-12-15 06:38:52.635028015 +0000 UTC installing libsm-dev (1.2.6-r1)
2025-12-15 06:38:52.635412973 +0000 UTC installing libxdmcp (1.1.5-r9)
2025-12-15 06:38:52.635797703 +0000 UTC installing libxcb (1.17.0-r8)
2025-12-15 06:38:52.636255032 +0000 UTC installing libx11 (1.8.12-r3)
2025-12-15 06:38:52.637167514 +0000 UTC installing libxt (1.3.1-r2)
2025-12-15 06:38:52.637521306 +0000 UTC installing libxdmcp-dev (1.1.5-r9)
2025-12-15 06:38:52.637846541 +0000 UTC installing xcb-proto (1.17.0-r4)
2025-12-15 06:38:52.638176142 +0000 UTC installing libxcb-dev (1.17.0-r8)
2025-12-15 06:38:52.638798003 +0000 UTC installing xtrans (1.6.0-r0)
2025-12-15 06:38:52.639016856 +0000 UTC installing libx11-dev (1.8.12-r3)
2025-12-15 06:38:52.639427843 +0000 UTC installing libxt-dev (1.3.1-r2)
2025-12-15 06:38:52.639907096 +0000 UTC installing xorgproto (2024.1-r3)
2025-12-15 06:38:52.640519922 +0000 UTC installing libice-dev (1.1.2-r2)
2025-12-15 06:38:52.640838222 +0000 UTC installing libxrender (0.9.12-r4)
2025-12-15 06:38:52.641161061 +0000 UTC installing libxft (2.3.9-r1)
2025-12-15 06:38:52.641443305 +0000 UTC installing mpdecimal (4.0.1-r3)
2025-12-15 06:38:52.641682378 +0000 UTC installing mpdecimal-dev (4.0.1-r3)
2025-12-15 06:38:52.641913826 +0000 UTC installing openssl-dev (3.6.0-r6)
2025-12-15 06:38:52.64301013 +0000 UTC installing patch (2.8-r3)
2025-12-15 06:38:52.643283048 +0000 UTC installing readline-dev (8.3-r1)
2025-12-15 06:38:52.64363914 +0000 UTC installing scanelf (1.3.10-r0)
2025-12-15 06:38:52.643948015 +0000 UTC installing tcl (9.0.3-r0)
2025-12-15 06:38:52.644341122 +0000 UTC installing tzdata (2025c-r0)
2025-12-15 06:38:52.6462456 +0000 UTC installing tcl-dev (9.0.3-r0)
2025-12-15 06:38:52.646607512 +0000 UTC installing tk (9.0.3-r0)
2025-12-15 06:38:52.64758041 +0000 UTC installing tk-dev (9.0.3-r0)
2025-12-15 06:38:52.64781056 +0000 UTC installing xz (5.8.1-r6)
2025-12-15 06:38:52.648320288 +0000 UTC installing xz-dev (5.8.1-r6)
2025-12-15 06:38:54.354589794 +0000 UTC qemu: generating ssh key pairs for ephemeral VM
2025-12-15 06:38:54.35468709 +0000 UTC qemu: generating SSH host key for VM
2025-12-15 06:38:54.356734939 +0000 UTC qemu: generating base initramfs
2025-12-15 06:38:54.406877573 +0000 UTC image configuration:
2025-12-15 06:38:54.406915268 +0000 UTC contents:
2025-12-15 06:38:54.406924686 +0000 UTC build repositories: [https://apk.cgr.dev/chainguard]
2025-12-15 06:38:54.406936735 +0000 UTC runtime repositories: []
2025-12-15 06:38:54.406943735 +0000 UTC repositories: []
2025-12-15 06:38:54.406951074 +0000 UTC keyring: []
2025-12-15 06:38:54.406958605 +0000 UTC packages: [microvm-init]
2025-12-15 06:38:54.565332567 +0000 UTC installing wolfi-baselayout (20230201-r24)
2025-12-15 06:38:54.566815293 +0000 UTC installing ca-certificates-bundle (20251003-r0)
2025-12-15 06:38:54.567903932 +0000 UTC installing libgcc (15.2.0-r6)
2025-12-15 06:38:54.56856485 +0000 UTC installing glibc-locale-posix (2.42-r4)
2025-12-15 06:38:54.570310922 +0000 UTC installing glibc (2.42-r4)
2025-12-15 06:38:54.577325067 +0000 UTC installing ld-linux (2.42-r4)
2025-12-15 06:38:54.906457574 +0000 UTC installing gnutar-rmt (1.35-r6)
2025-12-15 06:38:54.988165538 +0000 UTC installing gnutar (1.35-r6)
2025-12-15 06:38:54.995478434 +0000 UTC installing libattr1 (2.5.2-r54)
2025-12-15 06:38:54.996343242 +0000 UTC installing attr (2.5.2-r54)
2025-12-15 06:38:54.9976594 +0000 UTC installing zlib (1.3.1-r51)
2025-12-15 06:38:54.998639601 +0000 UTC installing libzstd1 (1.5.7-r5)
2025-12-15 06:38:55.000417525 +0000 UTC installing xz (5.8.1-r6)
2025-12-15 06:38:55.004069098 +0000 UTC installing libcrypto3 (3.6.0-r6)
2025-12-15 06:38:55.009227015 +0000 UTC installing kmod (34.2-r42)
2025-12-15 06:38:55.010780912 +0000 UTC installing libmnl (1.0.5-r6)
2025-12-15 06:38:55.011650932 +0000 UTC installing libbz2-1 (1.0.8-r21)
2025-12-15 06:38:55.01257953 +0000 UTC installing libelf (0.194-r0)
2025-12-15 06:38:55.014247945 +0000 UTC installing libbpf (1.6.2-r0)
2025-12-15 06:38:55.0153835 +0000 UTC installing libverto (0.3.2-r6)
2025-12-15 06:38:55.016205589 +0000 UTC installing krb5-conf (1.0-r7)
2025-12-15 06:38:55.036183319 +0000 UTC installing libcom_err (1.47.3-r1)
2025-12-15 06:38:55.036810792 +0000 UTC installing keyutils-libs (1.6.3-r37)
2025-12-15 06:38:55.037377123 +0000 UTC installing libssl3 (3.6.0-r6)
2025-12-15 06:38:55.038602793 +0000 UTC installing krb5-libs (1.22.1-r1)
2025-12-15 06:38:55.041257589 +0000 UTC installing libtirpc (1.3.7-r1)
2025-12-15 06:38:55.041837638 +0000 UTC installing libpcre2-8-0 (10.47-r0)
2025-12-15 06:38:55.042879657 +0000 UTC installing libsepol (3.9-r1)
2025-12-15 06:38:55.044597872 +0000 UTC installing libselinux (3.9-r1)
2025-12-15 06:38:55.05522021 +0000 UTC installing libnftnl (1.3.1-r0)
2025-12-15 06:38:55.056308111 +0000 UTC installing xtables (1.8.11-r29)
2025-12-15 06:38:55.062081988 +0000 UTC installing libcap (2.77-r0)
2025-12-15 06:38:55.062718826 +0000 UTC installing iproute2 (6.17.0-r2)
2025-12-15 06:38:55.066392171 +0000 UTC installing libstdc++ (15.2.0-r6)
2025-12-15 06:38:55.068643376 +0000 UTC installing inih (62-r1)
2025-12-15 06:38:55.069292552 +0000 UTC installing liburcu (0.15.5-r0)
2025-12-15 06:38:55.070237492 +0000 UTC installing libblkid (2.41.2-r2)
2025-12-15 06:38:55.071721787 +0000 UTC installing libuuid (2.41.2-r2)
2025-12-15 06:38:55.072280214 +0000 UTC installing xfsprogs-core (6.17.0-r2)
2025-12-15 06:38:55.074061388 +0000 UTC installing xfsprogs (6.17.0-r2)
2025-12-15 06:38:55.074589545 +0000 UTC installing libmount (2.41.2-r2)
2025-12-15 06:38:55.076182113 +0000 UTC installing mount (2.41.2-r2)
2025-12-15 06:38:55.076779425 +0000 UTC installing ncurses-terminfo-base (6.5_p20251025-r1)
2025-12-15 06:38:55.085006895 +0000 UTC installing ncurses (6.5_p20251025-r1)
2025-12-15 06:38:55.086806746 +0000 UTC installing setarch (2.41.2-r2)
2025-12-15 06:38:55.087500332 +0000 UTC installing libfdisk (2.41.2-r2)
2025-12-15 06:38:55.089046362 +0000 UTC installing sqlite-libs (3.51.1-r0)
2025-12-15 06:38:55.090371416 +0000 UTC installing util-linux (2.41.2-r2)
2025-12-15 06:38:55.094047645 +0000 UTC installing libsmartcols (2.41.2-r2)
2025-12-15 06:38:55.205503845 +0000 UTC installing util-linux-misc (2.41.2-r2)
2025-12-15 06:38:55.217106449 +0000 UTC installing libxcrypt (4.5.2-r0)
2025-12-15 06:38:55.217813648 +0000 UTC installing libcrypt1 (2.42-r4)
2025-12-15 06:38:55.218441071 +0000 UTC installing linux-pam (1.7.1-r3)
2025-12-15 06:38:55.227177502 +0000 UTC installing openssh-keygen (10.2_p1-r2)
2025-12-15 06:38:55.227970112 +0000 UTC installing openssh-server-config (10.2_p1-r2)
2025-12-15 06:38:55.228534786 +0000 UTC installing openssh-server (10.2_p1-r2)
2025-12-15 06:38:55.230623431 +0000 UTC installing busybox (1.37.0-r50)
2025-12-15 06:38:55.231891192 +0000 UTC installing microvm-init (0.0.1-r15)
2025-12-15 06:38:55.716235627 +0000 UTC qemu: starting VM
2025-12-15 06:38:55.717370112 +0000 UTC qemu: waiting for SSH
2025-12-15 06:38:56.218255659 +0000 UTC dial: dial tcp 127.0.0.1:35461: connect: connection refused
2025-12-15 06:38:57.627809062 +0000 UTC qemu: meta-data=/dev/vda isize=512 agcount=8, agsize=1638400 blks
2025-12-15 06:38:57.627881407 +0000 UTC qemu: = sectsz=4096 attr=2, projid32bit=1
2025-12-15 06:38:57.627888511 +0000 UTC qemu: = crc=1 finobt=1, sparse=1, rmapbt=1
2025-12-15 06:38:57.627893131 +0000 UTC qemu: = reflink=1 bigtime=1 inobtcount=1 nrext64=1
2025-12-15 06:38:57.627899625 +0000 UTC qemu: = exchange=0 metadir=0
2025-12-15 06:38:57.627980182 +0000 UTC qemu: data = bsize=4096 blocks=13107200, imaxpct=25
2025-12-15 06:38:57.627993215 +0000 UTC qemu: = sunit=0 swidth=0 blks
2025-12-15 06:38:57.628040931 +0000 UTC qemu: naming =version 2 bsize=4096 ascii-ci=0, ftype=1, parent=0
2025-12-15 06:38:57.62805901 +0000 UTC qemu: log =internal log bsize=4096 blocks=16384, version=2
2025-12-15 06:38:57.628103111 +0000 UTC qemu: = sectsz=4096 sunit=1 blks, lazy-count=1
2025-12-15 06:38:57.628169212 +0000 UTC qemu: realtime =none extsz=4096 blocks=0, rtextents=0
2025-12-15 06:38:57.628207452 +0000 UTC qemu: = rgcount=0 rgsize=0 extents
2025-12-15 06:38:57.628255349 +0000 UTC qemu: = zoned=0 start=0 reserved=0
2025-12-15 06:38:57.630842779 +0000 UTC qemu: Discarding blocks...Done.
2025-12-15 06:38:57.720193399 +0000 UTC conn read: read tcp 127.0.0.1:46990->127.0.0.1:35461: i/o timeout
2025-12-15 06:38:59.222176448 +0000 UTC conn read: read tcp 127.0.0.1:46994->127.0.0.1:35461: i/o timeout
2025-12-15 06:38:59.260698047 +0000 UTC qemu: [INIT] Checking for init.d scripts...
2025-12-15 06:38:59.260786016 +0000 UTC qemu: [INIT] No /opt/melange/init.d directory (optional, skipping)
2025-12-15 06:38:59.346908062 +0000 UTC qemu: ssh-keygen: generating new host keys: RSA ECDSA
2025-12-15 06:38:59.35224776 +0000 UTC qemu: Server listening on 0.0.0.0 port 2223.
2025-12-15 06:38:59.352276719 +0000 UTC qemu: Server listening on 0.0.0.0 port 22.
2025-12-15 06:38:59.727902671 +0000 UTC qemu: VM started successfully, SSH server is up
2025-12-15 06:38:59.72810984 +0000 UTC qemu: Connection closed by 10.0.2.2 port 46996
2025-12-15 06:39:00.78644909 +0000 UTC qemu: verifying VM host key against pre-provisioned key
2025-12-15 06:39:00.808162556 +0000 UTC qemu: Accepted publickey for root from 10.0.2.2 port 47010 ssh2: ECDSA SHA256:hYcrykOCna2nHhQkFcn6fTMQKSTjzUcSLyDMuZ5CVWc
2025-12-15 06:39:00.812596696 +0000 UTC qemu: VM host key successfully verified against pre-provisioned key
2025-12-15 06:39:00.814008215 +0000 UTC qemu: Connection closed by 10.0.2.2 port 47010
2025-12-15 06:39:00.836963472 +0000 UTC qemu: Accepted publickey for root from 10.0.2.2 port 47016 ssh2: ECDSA SHA256:hYcrykOCna2nHhQkFcn6fTMQKSTjzUcSLyDMuZ5CVWc
2025-12-15 06:39:00.859482771 +0000 UTC qemu: Accepted publickey for root from 10.0.2.2 port 54004 ssh2: ECDSA SHA256:hYcrykOCna2nHhQkFcn6fTMQKSTjzUcSLyDMuZ5CVWc
2025-12-15 06:39:00.884916126 +0000 UTC qemu: Accepted publickey for root from 10.0.2.2 port 47018 ssh2: ECDSA SHA256:hYcrykOCna2nHhQkFcn6fTMQKSTjzUcSLyDMuZ5CVWc
2025-12-15 06:39:00.924725113 +0000 UTC qemu: running kernel version: 6.16.10-r2-qemu-generic #Chainguard SMP PREEMPT_DYNAMIC Fri Oct 3 22:31:32 UTC 2025
2025-12-15 06:39:00.92479038 +0000 UTC qemu: setting up melange cachedir: ./melange-cache/
2025-12-15 06:39:00.936346328 +0000 UTC qemu: setting up local workspace
2025-12-15 06:39:00.974611462 +0000 UTC qemu: unmounting host workspace from guest
2025-12-15 06:39:00.978636829 +0000 UTC running step "git-checkout"
2025-12-15 06:39:00.990245905 +0000 UTC [git checkout] repo='https://github.com/python/cpython.git' dest='.' depth='-1' branch='' tag='v3.13.11' expcommit='627894459a84be3488a1789919679c997056a03c' recurse='false' sparse_paths=''
2025-12-15 06:39:00.995787131 +0000 UTC [git checkout] execute: git config --global --add safe.directory /tmp/tmp.3ox6Ai
2025-12-15 06:39:00.997234203 +0000 UTC [git checkout] execute: git config --global --add safe.directory /home/build
2025-12-15 06:39:00.998844899 +0000 UTC [git checkout] execute: git clone --quiet --origin=origin --config=user.name=Melange Build --config=user.email=melange-build@cgr.dev --config=advice.detachedHead=false --branch=v3.13.11 https://github.com/python/cpython.git /tmp/tmp.3ox6Ai
2025-12-15 06:40:23.232226624 +0000 UTC warning: refs/tags/v3.13.11 0cb1a348b4d2beb5c35d7d106b8cb9ebaf8493a3 is not a commit!
2025-12-15 06:40:24.115004596 +0000 UTC [git checkout] execute: cd /tmp/tmp.3ox6Ai
2025-12-15 06:40:24.115060229 +0000 UTC [git checkout] tar -c . | tar -C "/home/build" -x
2025-12-15 06:40:26.137823162 +0000 UTC [git checkout] execute: cd /home/build
2025-12-15 06:40:26.137913475 +0000 UTC [git checkout] execute: git config --global --add safe.directory /home/build
2025-12-15 06:40:26.140451158 +0000 UTC [git checkout] execute: git fetch --quiet origin --no-tags +refs/tags/v3.13.11:refs/origin/tags/v3.13.11
2025-12-15 06:40:26.70216967 +0000 UTC [git checkout] execute: git checkout --quiet origin/tags/v3.13.11
2025-12-15 06:40:27.36992694 +0000 UTC [git checkout] tag v3.13.11 is 627894459a84be3488a1789919679c997056a03c
2025-12-15 06:40:27.373401451 +0000 UTC [git checkout] execute: git fetch --unshallow origin 3.13:3.13
2025-12-15 06:40:27.381445468 +0000 UTC fatal: --unshallow on a complete repository does not make sense
2025-12-15 06:40:27.38219863 +0000 UTC [git checkout] failed to fetch branch 3.13
2025-12-15 06:40:27.38346857 +0000 UTC [git checkout] FAIL failed to apply cherry-pick
2025-12-15 06:40:27.383650665 +0000 UTC Failed to run command "/bin/sh -c 'set -e
[ -d '\''/home/build'\'' ] || mkdir -p '\''/home/build'\''
cd '\''/home/build'\''
#!/bin/sh
set -e
msg() { echo "[git checkout]" "$@"; }
fail() {
msg FAIL "$@"
exit 1
}
vr() {
msg "execute:" "$@"
"$@"
}
process_cherry_picks() {
local cpicksf="$1" oifs="$IFS" count=0
local fetched_branches=""
local sdate=${SOURCE_DATE_EPOCH:-0}
if [ "$sdate" -lt 315532800 ]; then
msg "Setting commit date to Jan 1, 1980 (SOURCE_DATE_EPOCH found ${SOURCE_DATE_EPOCH})"
sdate=315532800
fi
if [ -z "$cpicksf" ]; then
return 0
fi
if [ ! -f "$cpicksf" ]; then
msg "cherry picks input '\''$cpicksf'\'' is not a file"
return 1
fi
local line="" branch="" hash="" comment=""
while IFS= read -r line; do
line=${line%%#*}
[ -z "$line" ] && continue
if ! echo "$line" | grep -q '\'':'\''; then
msg "Invalid format, expected '\''[branch/]commit: comment'\''. Found: $line"
return 1
fi
branch=${line%%:*}
comment=${line#*:}
comment=$(
set -f
echo $comment
)
if [ -z "$comment" ]; then
msg "Empty comment for cherry-pick: $line"
return 1
fi
hash=${branch##*/}
[ "$branch" != "$hash" ] && branch=${branch%/*} || branch=""
if [ -n "$branch" ]; then
case " $fetched_branches " in
*" $branch "*) ;;
*)
vr git fetch --unshallow origin $branch:$branch || {
msg "failed to fetch branch $branch"
return 1
}
fetched_branches="$fetched_branches $branch "
;;
esac
fi
vr env \
GIT_COMMITTER_DATE="@$sdate" \
git cherry-pick -x "$hash" || {
msg "failed to cherry-pick $hash from branch $branch"
return 1
}
msg "Cherry-picked $hash from $branch with comment: $comment"
count=$((count + 1))
done <"$cpicksf"
if [ $count -gt 0 ]; then
msg "applied $count cherry-pick(s). head is now $(git rev-parse HEAD)"
fi
}
main() {
local repo=$1 dest=${2:-.} depth=${3:-"unset"} branch=$4
local tag=$5 expcommit=$6 recurse=${7:-false}
local cherry_pick="$8" sparse_paths="$9"
msg "repo='\''$repo'\'' dest='\''$dest'\'' depth='\''$depth'\'' branch='\''$branch'\''" \
"tag='\''$tag'\'' expcommit='\''$expcommit'\'' recurse='\''$recurse'\''" \
"sparse_paths='\''$sparse_paths'\''"
case "$recurse" in
true | false) : ;;
*) fail "recurse must be true or false, not '\''$recurse'\''" ;;
esac
[ -n "$repo" ] || fail "repository not provided"
if [ -z "$branch" ] && [ -z "$tag" ]; then
msg "Warning: you have not specified a branch or tag."
elif [ -n "$branch" ] && [ -n "$tag" ]; then
fail "both branch ($branch) and tag ($tag) are specified."
fi
[ -n "$expcommit" ] ||
msg "Warning: no expected-commit"
local flags="" depthflag="" dest_fullpath="" workdir=""
local remote="origin" rcfile="" rc="" quiet="--quiet"
flags="--config=advice.detachedHead=false"
[ -n "$branch" ] && flags="$flags --branch=$branch"
[ -n "$tag" ] && flags="$flags --branch=$tag"
[ "$recurse" = "true" ] && flags="$flags --recurse-submodules"
[ -n "$sparse_paths" ] && flags="$flags --sparse --filter=blob:none"
if [ "$depth" = "unset" ]; then
depth=1
if [ -n "$branch" -a -n "$expcommit" ]; then
depth=-1
fi
fi
[ "$depth" = "-1" ] || depthflag="--depth=$depth"
workdir=$(mktemp -d)
rcfile=$(mktemp)
mkdir -p "$dest"
dest_fullpath=$(realpath "$dest")
vr git config --global --add safe.directory "$workdir"
vr git config --global --add safe.directory "$dest_fullpath"
vr git clone $quiet "--origin=$remote" \
"--config=user.name=Melange Build" \
"--config=user.email=melange-build@cgr.dev" \
$flags \
${depthflag:+"$depthflag"} "$repo" "$workdir"
vr cd "$workdir"
if [ -n "$sparse_paths" ]; then
msg "Configuring sparse-checkout with paths: $sparse_paths"
vr git sparse-checkout set --cone $sparse_paths ||
fail "failed to configure sparse-checkout --filter=blob:none"
fi
msg "tar -c . | tar -C \"$dest_fullpath\" -x"
(
tar -c .
echo $? >"$rcfile"
) | tar -C "$dest_fullpath" -x --no-same-owner
read rc <"$rcfile" || fail "failed to read rc file"
[ $rc -eq 0 ] || fail "tar creation in $workdir failed"
rm -rf "$workdir"
vr cd "$dest_fullpath"
vr git config --global --add safe.directory "$dest_fullpath"
local foundcommit="" tagobj=""
if [ -z "$tag" ]; then
foundcommit=$(git rev-parse --verify HEAD)
if [ -n "$expcommit" ] && [ "$expcommit" != "$foundcommit" ]; then
if [ "$depth" = "-1" ]; then
msg "expected commit $expcommit on ${branch:-HEAD}," \
"got $foundcommit, performing reset"
vr git reset --hard "$expcommit"
else
fail "expected commit $expcommit on ${branch:-HEAD}," \
"got $foundcommit, set depth to -1 to attempt a reset"
fi
fi
msg "tip of ${branch:-HEAD} is commit $foundcommit"
process_cherry_picks "$cherry_pick" || fail "failed to apply cherry-pick"
return 0
fi
vr git fetch $quiet $remote ${depthflag:-"$depthflag"} --no-tags \
"+refs/tags/$tag:refs/$remote/tags/$tag"
vr git checkout $quiet "$remote/tags/$tag"
foundcommit=$(git rev-parse --verify HEAD)
if [ -z "$expcommit" ] || [ "$expcommit" = "$foundcommit" ]; then
msg "tag $tag is $foundcommit"
else
tagobj=$(git rev-parse --verify --end-of-options \
"refs/$remote/tags/$tag")
if [ "$expcommit" != "$tagobj" ]; then
[ "$tagobj" != "$expcommit" ] &&
msg "tag object hash was $tagobj"
fail "Expected commit $expcommit for $tag, found $foundcommit"
fi
msg "Warning: The provided expected-commit ($expcommit)"
msg "was the hash of the annotated tag object for $tag."
msg "Update to set expected-commit to $foundcommit"
fi
process_cherry_picks "$cherry_pick" ||
fail "failed to apply cherry-pick"
return 0
}
cpickf=$(mktemp) || {
echo "failed mktemp"
exit 1
}
cat >"$cpickf" <<"END_CHERRY_PICKS"
3.13/333d4a6f4967d3ace91492a39ededbcf3faa76a6: [CVE-2025-8291]
3.13/9ab89c026aa9611c4b0b67c288b8303a480fe742: [CVE-2025-6075]
3.13/289f29b0fe38baf2d7cb5854f4bb573cc34a6a15: [CVE-2025-13836]
3.13/ddcd2acd85d891a53e281c773b3093f9db953964: [CVE-2025-12084]
END_CHERRY_PICKS
main \
"https://github.com/python/cpython.git" "." \
"-1" "" \
"v3.13.11" "627894459a84be3488a1789919679c997056a03c" \
"false" "$cpickf" \
""
rm -f "$cpickf"
exit 0'": Process exited with status 1
2025-12-15 06:40:27.383845403 +0000 UTC qemu: sending shutdown signal
2025-12-15 06:40:27.40041837 +0000 UTC failed to build package: unable to run package python-3.13 pipeline: unable to run pipeline: unable to run pipeline: Process exited with status 1
2025-12-15 06:40:27.430311324 +0000 UTC failed to build: command melange failed: exit status 1
2025-12-15 06:40:27.43053931 +0000 UTC build failed: command melange failed: exit status 1