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package logistf required for amr_logistic(), but not installed by default

Status: Open.

#34 In AMRverse/AMRgen;

· evolarjun opened on Dec 23, 2025

Generalise upset plot function to accept any genotype and quantitative phenotype

Status: Open.

#33 In AMRverse/AMRgen;

· MaxWallat opened on May 20, 2025

Tree vs geno & pheno

Status: Open.

#32 In AMRverse/AMRgen;

· meganecarey opened on May 20, 2025

modify amr_logistic and solo_ppv_analysis to accept pre-computed binary matrix

Status: Open.

#31 In AMRverse/AMRgen;

· katholt opened on May 1, 2025

get_binary_matrix - to do list

Status: Open.

#29 In AMRverse/AMRgen;

· katholt opened on Mar 23, 2025

fix interpretation step in import_ncbi_ast

Status: Open.

#25 In AMRverse/AMRgen;

· katholt opened on Feb 10, 2025

Implement unit testing

Status: Open.

#24 In AMRverse/AMRgen;

· msberends opened on Feb 5, 2025

Replace old functions

Status: Open.

#23 In AMRverse/AMRgen;

· msberends opened on Feb 5, 2025

export pheno data to NCBI antibiogram

Status: Open.

#22 In AMRverse/AMRgen;

· katholt opened on Feb 5, 2025

amr_logistic function

Status: Open.

#20 In AMRverse/AMRgen;

· katholt opened on Feb 4, 2025

add example for barplot to readme

Status: Open.

#17 In AMRverse/AMRgen;

· katholt opened on Feb 2, 2025

amr_upset (without complexUpset dependency)

Status: Open.

#16 In AMRverse/AMRgen;

· katholt opened on Jan 31, 2025