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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 26 18

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 23 8

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 15 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 13 3

  5. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

  6. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 10 3

Repositories

Showing 10 of 553 repositories
  • clabe Public

    Command-line-interface Launcher for AIND Behavior Experiments

    AllenNeuralDynamics/clabe’s past year of commit activity
    Python 0 MIT 0 14 1 Updated Jan 20, 2026
  • aind-dynamic-foraging-models Public

    behavioral models for the dynamic foraging task

    AllenNeuralDynamics/aind-dynamic-foraging-models’s past year of commit activity
    Jupyter Notebook 1 MIT 1 3 2 Updated Jan 20, 2026
  • aind-analysis-job-dispatch Public

    Capsule to create the input job model for analysis wrapper

    AllenNeuralDynamics/aind-analysis-job-dispatch’s past year of commit activity
    Python 0 MIT 0 7 1 Updated Jan 20, 2026
  • analysis-pipeline-utils Public

    Utilities to facilitate writing scientific analysis pipelines to run in Code Ocean, in conjunction with S3 and DocumentDB storage

    AllenNeuralDynamics/analysis-pipeline-utils’s past year of commit activity
    Python 0 MIT 0 6 2 Updated Jan 20, 2026
  • aind-data-schema-models Public

    Data models used in aind-data-schema

    AllenNeuralDynamics/aind-data-schema-models’s past year of commit activity
    Python 0 MIT 4 5 2 Updated Jan 20, 2026
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 26 MIT 18 37 4 Updated Jan 20, 2026
  • aind-software-docs Public

    Centralized documentation repository for Scientific Computing, publishes to RTD

    AllenNeuralDynamics/aind-software-docs’s past year of commit activity
    Python 1 MIT 0 6 1 Updated Jan 20, 2026
  • Aind.Experiment.MotorObservatory-Fip Public

    An experiment that combines multi-camera behavior recordings with fiber photometry

    AllenNeuralDynamics/Aind.Experiment.MotorObservatory-Fip’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 20, 2026
  • AutoTomeQC Public

    Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickness, etc.

    AllenNeuralDynamics/AutoTomeQC’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Jan 20, 2026
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity
    Python 15 MIT 13 32 1 Updated Jan 20, 2026
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