Rastair

rastair/v0.8.2/Dockerfile

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+FROM rust:1.78-buster AS builder
+
+# RUN cargo new --bin /app/rastair
+WORKDIR /app 
+RUN git clone --branch v0.8.2 https://bitbucket.org/bsblabludwig/rastair.git
+WORKDIR /app/rastair
+RUN cargo build --release
+
+FROM r-base:4.3.2 AS release
+
+LABEL base_image="rust:1.78-buster, r-base:4.3.2" \
+      version="1"   \
+      software="rastair" \
+      software.version="v0.8.2" \
+      about.summary="Fast processing of TAPS-based sequencing data" \
+      about.home="https://bitbucket.org/bsblabludwig/rastair/src/v0.8.2/" \
+      about.documentation="https://bitbucket.org/bsblabludwig/rastair/src/v0.8.2/" \
+      about.license="SPDX:GPL-3" \
+      about.tags="Methylation, TAPS" \
+      maintainer="Andrew Gaines andrew.gaines@watchmakergenomics.com"
+
+# Copy the compiled binary from the build stage
+COPY --from=builder /app/rastair/target/release/rastair /usr/local/bin/rastair
+
+# Install system dependencies
+RUN apt update
+RUN apt-get -y upgrade
+
+# Install `ps` command for process monitoring
+RUN apt-get -y install procps
+
+# Install BiocManager for Bioconductor package management
+RUN Rscript -e "install.packages('BiocManager', repos='https://cloud.r-project.org')"
+
+# Install required R and Bioconductor packages
+RUN Rscript -e "BiocManager::install('Rsamtools', version = '3.18', ask = FALSE)" \
+    -e "if (!requireNamespace('remotes', quietly = TRUE)) install.packages('remotes', repos = 'https://cloud.r-project.org')" \
+    -e "remotes::install_version('ggplot2', version = '3.5.1', repos = 'https://cloud.r-project.org')" \
+    -e "remotes::install_version('gtable', version = '0.3.6', repos = 'https://cloud.r-project.org')"
+
+WORKDIR /app
+
+# Copy R scripts
+COPY --from=builder /app/rastair/scripts /app/scripts