Simple codebase update #3
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…n logging and variable naming
…hed elements handling
…ent to store timestamps
…s based on rootpath
… timestamp management
… argument and update its usage in processing files
…ndencies methods to accept codeFiles parameter for improved dependency resolution
…lting to codeBase.root
…ntra-file dependency resolution
…e instance context
…_changed_files method for change detection
…move unused gitignore handling
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