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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    Python 927 245

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 275 47

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 54 22

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Python 31 33

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 27 5

Repositories

Showing 10 of 163 repositories
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 10 Apache-2.0 3 643 11 Updated Feb 4, 2026
  • toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    DataBiosphere/toil’s past year of commit activity
    Python 927 Apache-2.0 245 398 4 Updated Feb 4, 2026
  • DataBiosphere/terra-scientific-pipelines-service’s past year of commit activity
    Java 1 BSD-3-Clause 0 0 4 Updated Feb 4, 2026
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent’s past year of commit activity
    Java 11 BSD-3-Clause 2 0 2 Updated Feb 4, 2026
  • data-browser Public
    DataBiosphere/data-browser’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 5 114 21 Updated Feb 4, 2026
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    TypeScript 10 BSD-3-Clause 4 0 4 Updated Feb 4, 2026
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 54 BSD-3-Clause 22 145 3 Updated Feb 4, 2026
  • DataBiosphere/terra-policy-service’s past year of commit activity
    Java 3 BSD-3-Clause 0 0 6 Updated Feb 4, 2026
  • findable-ui Public
    DataBiosphere/findable-ui’s past year of commit activity
    TypeScript 1 Apache-2.0 0 59 4 Updated Feb 4, 2026
  • dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    DataBiosphere/dsub’s past year of commit activity
    Python 275 Apache-2.0 47 75 3 Updated Feb 3, 2026

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