Winter wheat changes by Theresa Boas

[kvrigor]

Equivalent to winter wheat CLM5 patches by @tboas. Modifications include:

1. Addition of several CFTs to source code files for active simulation (as opposed to being merged into other CFTs)
2. Addition of winter wheat subroutines after Lu et al. (2017): https://doi.org/10.5194/gmd-10-1873-2017
3. Addition of cover cropping subroutine that allows multiple crop types on the same column within one year

For additional information and results please see:

Boas, T., Bogena, H., Grünwald, T., Heinesch, B., Ryu, D., Schmidt, M., Vereecken, H., Western, A., and Hendricks Franssen, H.-J.: Improving the representation of cropland sites in the Community Land Model (CLM) version 5.0, Geosci. Model Dev., 14, 573–601, https://doi.org/10.5194/gmd-14-573-2021, 2021.

[kvrigor]

Patching strategy

# *****************************
# 1. Set useful shell variables
# *****************************

# Directories
eCLM_DIR="/path/to/eCLM"
WORKDIR="/some/path/..."

# Winter wheat git info
WW_BRANCH="winter_wheat_cc"
WW_COMMIT_HASH="0b38504117e9d4b7e94586bdd26c631cc855266e"

# ************************************************************
# 2. Generate winter wheat patch file from Theresa's CLM5 fork
# ************************************************************

# Clone Theresa's winter wheat CLM5 branch
cd ${WORKDIR}
git clone -b ${WW_BRANCH} https://github.com/tboas/CTSM.git CLM5_WW
cd CLM5_WW

# Check changed files
git diff ${WW_COMMIT_HASH} --stat -- src

# Create patch file
git diff ${WW_COMMIT_HASH} -- src > ww_patch.diff
WW_PATCH=$(realpath ww_patch.diff)


# **************************************
# 3. Apply winter wheat patches to eCLM
# **************************************

# Go to eCLM and create winter wheat branch
cd ${eCLM_DIR}
git checkout -b ${WW_BRANCH}

# Transform CLM5 paths in patch file to equivalent paths in eCLM.
sed -i 's#/src/#/src/clm5/#g' ${WW_PATCH}

# Apply patch
git apply --ignore-space-change --ignore-whitespace ${WW_PATCH}

# Check if eCLM diffs correspond to original WW patch
git diff > ww_eclm_patch.diff
git diff --no-index ww_eclm_patch.diff ${WW_PATCH}  # <- should have no diffs here!

[AGonzalezNicolas]

Do you have a comparison between clm5-Winter_Wheat and eclm-Winter_Wheat?

[kvrigor]

Update 24-Jan-2025: This PR is on hold until these conditions are met:

• There should be a CI test that automatically runs eCLM test case/s and verifies that the results didn't change significantly
• Validation should be done in tandem with a domain expert

[AGonzalezNicolas]

@kvrigor could you have a look at this?

[kvrigor]

@AGonzalezNicolas this can only be merged after #54 and manual verification. This PR changes the default BGP/BGC behavior of eCLM so we have to be extra careful.