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@jt14den jt14den commented Jan 22, 2026

This PR adds a new capstone episode teaching Quarto for reproducible reporting, addressing the modern infrastructure needs of The Carpentries.

Changes

  • New Episode: '05-reproducible-reports.Rmd' covers creating, editing, and rendering Quarto documents.
  • Configuration: Added the new episode to 'config.yaml'.
  • Validation Fixes:
    • Fixed uninformative link text ('here') in episodes 01 and 04.
    • Fixed a malformed fenced div in episode 04.

Issues Addressed

- Add new episode '05-reproducible-reports.Rmd' teaching Quarto basics (Fixes #129).
- Update 'config.yaml' to include the new episode.
- Fix accessible link text in '01-intro-to-r.Rmd' and '04-data-viz-ggplot.Rmd'.
- Fix typo in fenced div in '04-data-viz-ggplot.Rmd'.
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github-actions bot commented Jan 22, 2026

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

  • 🎯 correct output
  • 🖼️ correct figures
  • ❓ new warnings
  • ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/LibraryCarpentry/lc-r/compare/md-outputs..md-outputs-PR-136

The following changes were observed in the rendered markdown documents:

 01-intro-to-r.md                                   |    5 +-
 04-data-viz-ggplot.md                              |    4 +-
 05-reproducible-reports.md (new)                   |  246 ++
 config.yaml (new)                                  |   86 +
 ...t-rendered-boxplot-exercise-subcollection-1.png |  Bin 49702 -> 49119 bytes
 ...a-viz-ggplot-rendered-boxplot-with-points-1.png |  Bin 43026 -> 43737 bytes
 ...data-viz-ggplot-rendered-unnamed-chunk-14-1.png |  Bin 40019 -> 39708 bytes
 fig/04-data-viz-ggplot-rendered-violin-plot-1.png  |  Bin 38803 -> 38647 bytes
 ...le-reports-rendered-plot-high-usage-1.png (new) |  Bin 0 -> 48979 bytes
 md5sum.txt                                         |    7 +-
 renv.lock (new)                                    | 3954 ++++++++++++++++++++
 11 files changed, 4294 insertions(+), 8 deletions(-)
What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2026-01-22 03:05:23 +0000

- Replace knitr '{{r}}' syntax with standard Markdown four-backticks for displaying code chunks.
- Update the example setup chunk to load and clean raw data internally, avoiding dependencies on intermediate files from previous episodes.
github-actions bot pushed a commit that referenced this pull request Jan 22, 2026
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